Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Reverse (-)

47939752 .. 47942163

Gene Structure 2412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACTCTGATTCGTGGAGCAATCTGTTCTCGTCCTCGAACGCGAGGCGGTACCAATCTCGATCCGATCTGTTCGGACACGAGGAAATAGAGGGAGACGATGAGATAAAGGCTGAGTTTTTGTGCCCCTTTTGCGCGGAGGATTTCGATGTCGTTGGGCTTTGTTGTCACATCGATGAGGAACATCCCGTCGAGGCTAAGAATGGGGTAGGTTTCAGTTGCAAGTTAGTGGAGTGGGGTGATGTGTTTGAATCGTTTGGTGATGGTGAGACAGGAGAGTCTGTCCAGTTTGTGCAAAGAGGGTGGGATCAAATCTTGTTACCCATATTACCACACAACATGGGACGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACAGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGTGAACAGCCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAGAAGAGTCCTCAGAAAGGCGTTGGTTTTAGAATTGCTCAACAACCACCTCTATCAACTAAAGACCAAGAGGAGAAGGCTCGGAAGTGTGAGTTTGTTCAAGGATTGCTGATGTCCACCATTCTTGATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

235

Amino Acids

26.41

Weight (kDa)

4.87

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	39 - 70	8.4e-12	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	128 - 231	3.4e-31	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
Acc65I	GGTACC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	418
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	2 cut(s)	49, 137
AclWI	GGATC	4 cut(s)	57, 315, 376, 467
AcsI	RAATTY	1 cut(s)	356
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	4 cut(s)	251, 387, 459, 671
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	90, 263
AlwI	GGATC	4 cut(s)	57, 315, 376, 467
AlwNI	CAGNNNCTG	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	356
Asp718I	GGTACC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	251, 272, 278
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	402, 434
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	257, 540
BcoDI	GTCTC	2 cut(s)	90, 263
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	477
Bsa29I	ATCGAT	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	2 cut(s)	184, 532
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMII	CTCAG	2 cut(s)	105, 596
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	656
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	390
Bsh1236I	CGCG	2 cut(s)	44, 137
BshNI	GGYRCC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	90, 263
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	62, 67, 307, 368, 472
BspACI	CCGC	2 cut(s)	49, 137
BspCNI	CTCAG	2 cut(s)	106, 595
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	44, 137
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	4 cut(s)	57, 315, 376, 467
BspT107I	GGYRCC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	5 cut(s)	62, 67, 307, 368, 472
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	569
BstDEI	CTNAG	3 cut(s)	114, 198, 582
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	184, 532
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	65, 70, 310, 371, 475
BstMAI	GTCTC	2 cut(s)	90, 263
BstMBI	GATC	5 cut(s)	62, 67, 307, 368, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	518
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	44, 137
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	184, 532
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	3 cut(s)	284, 319, 676
CviAII	CATG	3 cut(s)	340, 515, 556
CviJI	RGCY	7 cut(s)	113, 160, 197, 403, 425, 529, 650
CviKI_1	RGCY	7 cut(s)	113, 160, 197, 403, 425, 529, 650
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	114, 198, 582
DpnI	GATC	5 cut(s)	64, 69, 309, 370, 474
DpnII	GATC	5 cut(s)	62, 67, 307, 368, 472
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	3 cut(s)	343, 518, 559
FaiI	YATR	7 cut(s)	326, 341, 494, 496, 516, 557, 706
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	339, 514, 555
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	171, 519
Fsp4HI	GCNGC	1 cut(s)	404
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	404
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	343, 518, 559
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	5 cut(s)	5, 11, 251, 278, 577
HphI	GGTGA	3 cut(s)	251, 272, 278
Hpy166II	GTNNAC	3 cut(s)	419, 524, 687
Hpy188I	TCNGA	5 cut(s)	10, 67, 77, 585, 654
Hpy188III	TCNNGA	3 cut(s)	60, 556, 695
Hpy8I	GTNNAC	3 cut(s)	419, 524, 687
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	404, 437, 553, 640
HpyCH4V	TGCA	3 cut(s)	222, 295, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	114, 198, 582
Hsp92II	CATG	3 cut(s)	343, 518, 559
HspAI	GCGC	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	62, 67, 307, 368, 472
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	258, 299, 349, 416, 483, 519
Lsp1109I	GCAGC	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	167, 318
MalI	GATC	5 cut(s)	64, 69, 309, 370, 474
MboI	GATC	5 cut(s)	62, 67, 307, 368, 472
MboII	GAAGA	4 cut(s)	432, 447, 477, 586
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	356, 373, 603
MlyI	GAGTC	2 cut(s)	287, 586
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	2 cut(s)	174, 519
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	5 cut(s)	62, 67, 307, 368, 472
NlaIII	CATG	3 cut(s)	343, 518, 559
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	518
PagI	TCATGA	1 cut(s)	555
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	11, 251
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	2 cut(s)	286, 585
PpsI	GAGTC	2 cut(s)	286, 585
PscI	ACATGT	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	174, 519
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	5 cut(s)	62, 67, 307, 368, 472
SchI	GAGTC	2 cut(s)	287, 586
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	7 cut(s)	214, 405, 439, 472, 508, 553, 622
SmiMI	CAYNNNNRTG	2 cut(s)	174, 519
Sse9I	AATT	3 cut(s)	356, 373, 603
SsiI	CCGC	2 cut(s)	49, 137
SspI	AATATT	1 cut(s)	390
TaqI	TCGA	7 cut(s)	38, 61, 147, 174, 192, 377, 543
TasI	AATT	3 cut(s)	356, 373, 603
TfiI	GAWTC	2 cut(s)	11, 251
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	432, 525, 544, 572
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.