RchiOBHm_Chr4g0424171

protein DEHYDRATION-INDUCED 19 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008255
Physical Location & Seq
Reverse (-)
49721421 .. 49722748
1328 bp
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UTR
Exon/CDS
Intron
PRQ39347

Sequence Viewer

Length: 297 bp
ATGGACTCTGATTCGTGGAGCAATCTGTTCTCGTCCTCGAACGCGAGGCGGTACCAATCTCGATCCGATCTGTTCGGACACGAGGAAATAGAGGGAGACGATGAGATAAAGGCTGAGTTTTTGTGCCCCTTTTGCGCGGAGGATTTCGATGTCGTTGGGCTTTGTTGTCACATCGATGAGGAACATCCCGTCGAGGCTAAGAATGGGGTCTGTCCAGTTTGTGCAAAGAGGGTGGGATCAAATCTTGTCACCCATATTACCACACAACATGGGAGTTTGTTAAAGATATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

4.76

Isoelectric Point (pI)

67.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Di19 PF05605 39 - 91 9.1e-25 Drought induced 19 protein (Di19), zinc-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 51
AccII CGCG 2 cut(s) 44, 137
AciI CCGC 2 cut(s) 49, 137
AclWI GGATC 2 cut(s) 57, 244
AfaI GTAC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 57, 244
Asp718I GGTACC 1 cut(s) 51
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 51
BauI CACGAG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 174
BseGI GGATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 128
Bsh1236I CGCG 2 cut(s) 44, 137
BshNI GGYRCC 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 62, 67, 236
BspACI CCGC 2 cut(s) 49, 137
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 2 cut(s) 44, 137
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 2 cut(s) 57, 244
BspT107I GGYRCC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 215
BssMI GATC 3 cut(s) 62, 67, 236
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 114, 198
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 2 cut(s) 44, 137
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 65, 70, 239
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 62, 67, 236
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 128
BstUI CGCG 2 cut(s) 44, 137
Bsu15I ATCGAT 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 1 cut(s) 184
CfoI GCGC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 1 cut(s) 269
CviJI RGCY 3 cut(s) 113, 160, 197
CviKI_1 RGCY 3 cut(s) 113, 160, 197
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 114, 198
DpnI GATC 3 cut(s) 64, 69, 238
DpnII GATC 3 cut(s) 62, 67, 236
Eco32I GATATC 1 cut(s) 288
EcoRV GATATC 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 1 cut(s) 272
FaiI YATR 2 cut(s) 255, 270
FalI AAGNNNNNCTT 1 cut(s) 275
FatI CATG 1 cut(s) 268
FokI GGATG 1 cut(s) 171
GlaI GCGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 5, 11
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 10, 67, 77
Hpy188III TCNNGA 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 114, 198
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 135
KpnI GGTACC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 62, 67, 236
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 167, 247
MalI GATC 3 cut(s) 64, 69, 238
MboI GATC 3 cut(s) 62, 67, 236
MhlI GDGCHC 1 cut(s) 128
MnlI CCTC 8 cut(s) 39, 46, 76, 85, 133, 172, 187, 222
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 174
MvnI CGCG 2 cut(s) 44, 137
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 3 cut(s) 62, 67, 236
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 167, 247
PfeI GAWTC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 3 cut(s) 62, 67, 236
SduI GDGCHC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 174
SsiI CCGC 2 cut(s) 49, 137
TaqI TCGA 5 cut(s) 38, 61, 147, 174, 192
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 2 cut(s) 167, 247
Tsp45I GTSAC 2 cut(s) 167, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.