RchiOBHm_Chr4g0424161

protein DEHYDRATION-INDUCED 19 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008255
Physical Location & Seq
Reverse (-)
49720124 .. 49721419
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39346

Sequence Viewer

Length: 381 bp
ATGTATTCCTTGACTATACATTACGTTCAGCGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAGGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACGGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACGTGTGAGTGAACCACCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAAGAGGAGTCCTCAGAAAGAATTGCTCAACAGCCACCTCTATCAACTAAAGACCAAGAGGAGAAGGCTCGGAAGTGTGAGTTTGTTCAAGGATTGCTGATGTCCACCATTCTTGATGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

126

Amino Acids

14.35

Weight (kDa)

6.14

Isoelectric Point (pI)

72.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Di19_C PF14571 23 - 122 5.9e-34 Stress-induced protein Di19, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AclWI GGATC 2 cut(s) 61, 152
AcsI RAATTY 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 3 cut(s) 72, 144, 344
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 2 cut(s) 61, 152
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 109
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 275, 329
BseXI GCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 53, 157
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 61, 152
BssMI GATC 2 cut(s) 53, 157
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 56, 160
BstMBI GATC 2 cut(s) 53, 157
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 217
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 109
CspCI CAANNNNNGTGG 1 cut(s) 349
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 88, 110, 289, 323
CviKI_1 RGCY 4 cut(s) 88, 110, 289, 323
DdeI CTNAG 1 cut(s) 268
DpnI GATC 2 cut(s) 55, 159
DpnII GATC 2 cut(s) 53, 157
EcoO109I RGGNCCY 1 cut(s) 109
FaeI CATG 1 cut(s) 244
FaiI YATR 5 cut(s) 17, 179, 181, 242, 379
FatI CATG 1 cut(s) 240
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 110
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 104, 209, 360
Hpy188I TCNGA 2 cut(s) 271, 327
Hpy188III TCNNGA 2 cut(s) 241, 368
Hpy8I GTNNAC 3 cut(s) 104, 209, 360
HpyAV CCTTC 4 cut(s) 89, 122, 238, 313
HpyCH4IV ACGT 2 cut(s) 24, 199
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 2 cut(s) 24, 199
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 53, 157
LpnPI CCDG 5 cut(s) 34, 92, 101, 168, 204
Lsp1109I GCAGC 1 cut(s) 75
MaeII ACGT 2 cut(s) 24, 199
MalI GATC 2 cut(s) 55, 159
MboI GATC 2 cut(s) 53, 157
MboII GAAGA 3 cut(s) 117, 132, 162
MflI RGATCY 1 cut(s) 53
MluCI AATT 3 cut(s) 41, 58, 276
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 5 cut(s) 113, 253, 277, 303, 307
MseI TTAA 1 cut(s) 77
NdeII GATC 2 cut(s) 53, 157
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 153
PagI TCATGA 1 cut(s) 240
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 53
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 53, 157
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 272
SetI ASST 8 cut(s) 27, 90, 124, 157, 193, 202, 238, 295
SfcI CTRYAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 41, 58, 276
SspI AATATT 1 cut(s) 75
TaiI ACGT 2 cut(s) 27, 202
TaqI TCGA 2 cut(s) 62, 228
TasI AATT 3 cut(s) 41, 58, 276
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 117, 210, 229, 257
TspGWI ACGGA 1 cut(s) 164
XapI RAATTY 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.