Rh4CG267400

protein DEHYDRATION-INDUCED 19 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0008255
Physical Location & Seq
Reverse (-)
52143402 .. 52145987
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG267400.1

Sequence Viewer

Length: 381 bp
ATGTATTCCTTGACCATACATTACGTTCAGCGCAAAAGGAAATTTCGCAGGGGATCTAATTCGACATTTTCAATATTAAGGAAAGAGCTGCGAGAAGGAAGTCTACAAGCCCTTCTGGGAGGTTCTTCATTCCCATTTTCTTCAAATACGGAACCTGATCCTTTGTTGTCTTCTTTTATATACAATGCACCTGATGAACATGTGAGTGAACCACCCCATCCTTTAGTCGAAGCACCTTTCATGAAGGAAAGCACAAAAGAGGAGTCCTCAGAAAGAATTGCTCAACAACCACCTCTATCAACTAAAGACCAAGAGGAGAAGGCTCGGAAGTGTGAGTTTGTTCAAGGATTGCTGATGTCCACCATTCTTGATGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Di19_C zf-Di19

Protein Analysis

126

Amino Acids

14.33

Weight (kDa)

5.93

Isoelectric Point (pI)

71.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Di19_C PF14571 23 - 122 4.4e-34 Stress-induced protein Di19, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AclWI GGATC 2 cut(s) 61, 152
AcsI RAATTY 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 3 cut(s) 72, 144, 344
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 2 cut(s) 61, 152
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 225
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 275, 329
BseXI GCAGC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 53, 157
BspCNI CTCAG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 61, 152
BssMI GATC 2 cut(s) 53, 157
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 56, 160
BstMBI GATC 2 cut(s) 53, 157
BstNSI RCATGY 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtsCI GGATG 1 cut(s) 217
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 33
CspCI CAANNNNNGTGG 1 cut(s) 349
CviAII CATG 2 cut(s) 200, 241
CviJI RGCY 3 cut(s) 88, 110, 323
CviKI_1 RGCY 3 cut(s) 88, 110, 323
DdeI CTNAG 1 cut(s) 268
DpnI GATC 2 cut(s) 55, 159
DpnII GATC 2 cut(s) 53, 157
FaeI CATG 2 cut(s) 203, 244
FaiI YATR 6 cut(s) 17, 179, 181, 201, 242, 379
FatI CATG 2 cut(s) 199, 240
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 203, 244
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 104, 209, 360
Hpy188I TCNGA 2 cut(s) 271, 327
Hpy188III TCNNGA 2 cut(s) 241, 368
Hpy8I GTNNAC 3 cut(s) 104, 209, 360
HpyAV CCTTC 4 cut(s) 89, 122, 238, 313
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 2 cut(s) 203, 244
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 53, 157
LpnPI CCDG 4 cut(s) 34, 101, 168, 204
Lsp1109I GCAGC 1 cut(s) 75
MaeII ACGT 1 cut(s) 24
MalI GATC 2 cut(s) 55, 159
MboI GATC 2 cut(s) 53, 157
MboII GAAGA 3 cut(s) 117, 132, 162
MflI RGATCY 1 cut(s) 53
MluCI AATT 3 cut(s) 41, 58, 276
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 5 cut(s) 113, 253, 277, 303, 307
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 204
NdeII GATC 2 cut(s) 53, 157
NlaIII CATG 2 cut(s) 203, 244
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 240
PciI ACATGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PscI ACATGT 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 153
PsuI RGATCY 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 53, 157
SchI GAGTC 1 cut(s) 272
SetI ASST 7 cut(s) 27, 90, 124, 157, 193, 238, 295
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 41, 58, 276
SspI AATATT 1 cut(s) 75
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 62, 228
TasI AATT 3 cut(s) 41, 58, 276
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 117, 210, 229, 257
TspGWI ACGGA 1 cut(s) 164
XapI RAATTY 1 cut(s) 41
XceI RCATGY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.