Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008255

Physical Location & Seq

Genomic Coordinates Forward (+)

12926838 .. 12929443

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1159500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGACTCTGATAATTCGTGGAGCAGTCTCTTCTCGACCCCCTCGTCGAGGCGGTATCTGTCGCGATCCGATCTGTTTTCGCACGAAGAAACTGACGGGGACGATGATTTAAAGGCCGAGTTTTTGTGTCCTTTTTGCGCCGAGGATTTTGATGTCGTTGGGCTTTGCTGCCACATCGATGAGGAGCATCCGCTGGAGGCCAAGAACGGGGTCTGTCCAGTTTGTGCGAAAAGGGTGGGAGCAAACCTTGTGAGCCATATTACTACGCAACATGGGAGTTTGTTAAAGATATCCTTTTGTTTGGACTTCTGTGTTTGGGTCATGTGCTCCTTGACTATACATTACGTTCAGCGCAAGAGGAAACTTCGCAGGGGATCTGGGTCAACATTTTCTATATTAAGGAAAGAACTGCGGGAAGGAAGTTTGCAATCTCTTCTAGGAGGGTCTTCGTTCCTTTCCTCAAACACTGAAGCTGATCCTTTGTTGTCTTCTTTTATATATAACCCTCCCACGGTTGATGAGGATGTCAGTACACAGACCCATCCTTTAGTTGAACCATCTTTTGTGAAGGAGAGCACAAAGGAAGAGGTCTCGGAAAGAAGCGTTCAACAGCCACCGTTATCTCGCAAGGACCAAGAGGAGCAAGCGCGGAGGTGTGAGTTTGTTCAAGGACTGCTGATGTCGACTATTTTTGATGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

5.02

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	40 - 92	4.8e-24	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	130 - 230	2.6e-37	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06760 AT3G06760 AT5G49230 AT5G49230
fragaria_vesca	FvH4_4g19190
malus_domestica	MD13G1160200.v1.1 MD16G1159500.v1.1
prunus_persica	Prupe.1G126600_v2.0.a1 Prupe.1G126600_v2.0.a1 Prupe.1G126700_v2.0.a1
pyrus_communis	pycom13g13630
rosa_chinensis	RchiOBHm_Chr4g0424161 RchiOBHm_Chr4g0424171
rosa_laevigata	RLG00000007500
rosa_multiflora	Rmu_sc0002260.1_g000044 Rmu_sc0038176.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366140
rosa_rugosa	Rorug04G0193500
rosa_samantha	Rh4AG251400 Rh4BG256500 Rh4CG267400 Rh4DG251100
rosa_wichuraiana	Rw4G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	2 cut(s)	64, 649
AciI	CCGC	4 cut(s)	52, 191, 412, 649
AclWI	GGATC	3 cut(s)	60, 382, 470
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	3 cut(s)	48, 207, 511
AgsI	TTSAA	3 cut(s)	554, 608, 668
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw21I	GWGCWC	2 cut(s)	329, 578
Alw26I	GTCTC	2 cut(s)	32, 595
AlwI	GGATC	3 cut(s)	60, 382, 470
AoxI	GGCC	2 cut(s)	114, 198
ApeKI	GCWGC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	140, 354, 649
AspS9I	GGNCC	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	631
BbsI	GAAGAC	2 cut(s)	438, 480
Bbv12I	GWGCWC	2 cut(s)	329, 578
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	549, 565
BcoDI	GTCTC	2 cut(s)	32, 595
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	2 cut(s)	438, 480
BpmI	CTGGAG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	141, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 207, 511
Bse1I	ACTGG	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	141, 510
BseGI	GGATG	3 cut(s)	187, 529, 541
BseLI	CCNNNNNNNGG	3 cut(s)	48, 207, 511
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	197, 653
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	2 cut(s)	64, 649
BshFI	GGCC	2 cut(s)	116, 200
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	329, 578
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	48, 207, 511
BsmAI	GTCTC	2 cut(s)	32, 595
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	116, 200
Bso31I	GGTCTC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	329, 578
Bsp143I	GATC	4 cut(s)	65, 70, 374, 475
Bsp68I	TCGCGA	1 cut(s)	64
BspACI	CCGC	4 cut(s)	52, 191, 412, 649
BspANI	GGCC	2 cut(s)	116, 200
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	2 cut(s)	64, 649
BspPI	GGATC	3 cut(s)	60, 382, 470
BspTNI	GGTCTC	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	141, 510
BssMI	GATC	4 cut(s)	65, 70, 374, 475
Bst4CI	ACNGT	2 cut(s)	514, 618
Bst6I	CTCTTC	3 cut(s)	35, 438, 579
BstC8I	GCNNGC	1 cut(s)	645
BstDSI	CCRYGG	1 cut(s)	510
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	187, 529, 541
BstFNI	CGCG	2 cut(s)	64, 649
BstHHI	GCGC	3 cut(s)	140, 354, 649
BstKTI	GATC	4 cut(s)	68, 73, 377, 478
BstMAI	GTCTC	2 cut(s)	32, 595
BstMBI	GATC	4 cut(s)	65, 70, 374, 475
BstUI	CGCG	2 cut(s)	64, 649
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	438, 480
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	116, 200
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	187, 529, 541
BtsIMutI	CAGTG	1 cut(s)	465
BtuMI	TCGCGA	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	645
CfoI	GCGC	3 cut(s)	140, 354, 649
Cfr13I	GGNCC	1 cut(s)	631
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	2 cut(s)	272, 322
CviJI	RGCY	6 cut(s)	116, 163, 200, 255, 473, 613
CviKI_1	RGCY	6 cut(s)	116, 163, 200, 255, 473, 613
CviQI	GTAC	1 cut(s)	531
DpnI	GATC	4 cut(s)	67, 72, 376, 477
DpnII	GATC	4 cut(s)	65, 70, 374, 475
DraI	TTTAAA	1 cut(s)	111
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	35, 438, 579
EarI	CTCTTC	3 cut(s)	35, 438, 579
Eco31I	GGTCTC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	489
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	291
FaeI	CATG	2 cut(s)	275, 325
FaiI	YATR	9 cut(s)	258, 273, 323, 338, 395, 497, 499, 501, 703
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	2 cut(s)	271, 321
FauI	CCCGC	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	3 cut(s)	174, 528, 536
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	3 cut(s)	139, 353, 648
GluI	GCNGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	116, 200
HhaI	GCGC	3 cut(s)	140, 354, 649
Hin1II	CATG	2 cut(s)	275, 325
Hin6I	GCGC	3 cut(s)	138, 352, 647
HinP1I	GCGC	3 cut(s)	138, 352, 647
HincII	GTYRAC	2 cut(s)	384, 684
HindII	GTYRAC	2 cut(s)	384, 684
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	384, 533, 684
Hpy188I	TCNGA	3 cut(s)	10, 70, 595
Hpy188III	TCNNGA	2 cut(s)	34, 63
Hpy8I	GTNNAC	3 cut(s)	384, 533, 684
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	410, 562
HpyCH4III	ACNGT	2 cut(s)	514, 618
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	275, 325
HspAI	GCGC	3 cut(s)	138, 352, 647
Kzo9I	GATC	4 cut(s)	65, 70, 374, 475
LmnI	GCTCC	5 cut(s)	21, 184, 239, 332, 640
LpnPI	CCDG	4 cut(s)	179, 231, 355, 363
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	345
MalI	GATC	4 cut(s)	67, 72, 376, 477
MboI	GATC	4 cut(s)	65, 70, 374, 475
MboII	GAAGA	6 cut(s)	22, 98, 425, 438, 480, 596
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	2 cut(s)	329, 578
MluCI	AATT	1 cut(s)	13
MseI	TTAA	3 cut(s)	110, 284, 398
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	64, 649
NdeII	GATC	4 cut(s)	65, 70, 374, 475
NlaIII	CATG	2 cut(s)	275, 325
NmeAIII	GCCGAG	2 cut(s)	142, 166
NruI	TCGCGA	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	374
RruI	TCGCGA	1 cut(s)	64
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	110, 284, 398
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	65, 70, 374, 475
Sau96I	GGNCC	1 cut(s)	631
SduI	GDGCHC	2 cut(s)	329, 578
SetI	ASST	5 cut(s)	249, 348, 475, 591, 656
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	4 cut(s)	52, 191, 412, 649
SspMI	CTAG	1 cut(s)	437
TaaI	ACNGT	2 cut(s)	514, 618
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	4 cut(s)	35, 47, 177, 683
TasI	AATT	1 cut(s)	13
TatI	WGTACW	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	110, 284, 398
Tru9I	TTAA	3 cut(s)	110, 284, 398
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	1 cut(s)	168
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.