AT3G07350

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010118
Physical Location & Seq
Forward (+)
2347186 .. 2348791
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07350.1

Sequence Viewer

Length: 897 bp
ATGGGTTTCTCTAGAGCAAAACGTGTCACTGATCCACTTGCAGAAGAGGTTAGGGCTCGTCTCGTTGGATGCAGCTTTAGCAGCGGCAGCGAACATACCGGCGACGGAATTGAAGACTACGAAGACGACGACTCGCCTTGTCTCTCTGATCTAGTACAAGGGTTCTTGGAAGATGAAGTTGATACAGTTGATGATGAGTCATGCTGGTGTGATCAAGATTCTGGTTCCGACTCGGATTCTGACTCGGAACTTGGCGAGCTCCCTGACTTTGCCGACGATATCGCCAAGCTTCTGAGGAACTCTCTCAGGGAAGATTCATACGGACGAACGGTGCTGGTACATGTGGCGAGAGCGATGGAAATGTTGTCGTCTCTCGGATCTCAGCCCGAACAGCGTGCCGTTTTCCAGCGTAAGGTCATGTCTCTTCTTAGAGAACTCGGCCACAATGCGGCCATCTGCAAAACTAAATGGAAATCCTCCGGCGGACTCACCGCCGGTAACCATGAGTTCATCGACGTCGTGTATACACCTTCCGCCTCGTCTCAGTCCGTCCGTTTCATCGTCGATTTAGATTTCTCGTCGCGGTTTCAAATCGCGAGGCCAACTTCACAGTACGCGCGTGTGCTTCAATCGCTTCCGGCGGTTTTCGTCGGAAAGGGGGATGATCTGAAGCGGATCTTGCGTCTCGTGTGTGACGCCGCGAGGATTTCTCTTAGGAACCGCGGGCTGACGCTTCCGCCGTGGAGGAAGAATCGTTATATGCAGACGCGGTGGCTTGGTCCTTACAAACGCACCACCAACTTAACGCCGTCAACTTCCGGTGTAGACACCGTCATGTGTCGTGCCATCGGTTTCGATAATGCCGTCGGAGGCCGTCTATTTGTGCGAACACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

298

Amino Acids

33.12

Weight (kDa)

5.53

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 49 - 264 1.3e-71 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 519
AccI GTMKAC 2 cut(s) 524, 825
AccII CGCG 7 cut(s) 583, 596, 617, 619, 701, 723, 769
AclWI GGATC 3 cut(s) 26, 385, 683
AcoI YGGCCR 2 cut(s) 439, 450
AcuI CTGAAG 1 cut(s) 689
AcyI GRCGYC 2 cut(s) 516, 696
AfaI GTAC 3 cut(s) 156, 339, 614
AfiI CCNNNNNNNGG 2 cut(s) 412, 448
AflIII ACRYGT 2 cut(s) 22, 340
AgsI TTSAA 3 cut(s) 113, 590, 629
AluBI AGCT 3 cut(s) 75, 259, 289
AluI AGCT 3 cut(s) 75, 259, 289
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 6 cut(s) 65, 146, 375, 426, 546, 689
AlwI GGATC 3 cut(s) 26, 385, 683
AoxI GGCC 4 cut(s) 439, 450, 599, 871
ApeKI GCWGC 3 cut(s) 72, 81, 87
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 779
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 1 cut(s) 779
BanII GRGCYC 2 cut(s) 58, 261
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 120, 129
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 84, 93, 99
BccI CCATC 3 cut(s) 349, 461, 854
BceAI ACGGC 5 cut(s) 383, 724, 793, 848, 858
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 6 cut(s) 65, 146, 375, 426, 546, 689
BfaI CTAG 2 cut(s) 12, 152
BisI GCNGC 6 cut(s) 73, 82, 85, 88, 450, 699
BlsI GCNGC 6 cut(s) 74, 83, 86, 89, 451, 700
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 1 cut(s) 779
BmiI GGNNCC 2 cut(s) 226, 719
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 120, 129
BplI GAGNNNNNCTC 4 cut(s) 286, 318, 694, 726
BsaHI GRCGYC 2 cut(s) 516, 696
BsaJI CCNNGG 2 cut(s) 721, 740
BsaWI WCCGGW 1 cut(s) 818
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 448
Bse118I RCCGGY 2 cut(s) 98, 494
BseDI CCNNGG 2 cut(s) 721, 740
BseGI GGATG 2 cut(s) 74, 667
BseLI CCNNNNNNNGG 2 cut(s) 412, 448
BseMII CTCAG 4 cut(s) 284, 319, 395, 557
BseXI GCAGC 3 cut(s) 84, 93, 99
Bsh1236I CGCG 7 cut(s) 583, 596, 617, 619, 701, 723, 769
BshFI GGCC 4 cut(s) 441, 452, 601, 873
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 5 cut(s) 99, 480, 495, 638, 819
BslI CCNNNNNNNGG 2 cut(s) 412, 448
BsmAI GTCTC 6 cut(s) 65, 146, 375, 426, 546, 689
BsmBI CGTCTC 4 cut(s) 65, 375, 546, 689
BsnI GGCC 4 cut(s) 441, 452, 601, 873
Bsp1286I GDGCHC 2 cut(s) 58, 261
Bsp143I GATC 6 cut(s) 31, 148, 211, 377, 664, 675
Bsp68I TCGCGA 1 cut(s) 596
BspANI GGCC 4 cut(s) 441, 452, 601, 873
BspCNI CTCAG 4 cut(s) 285, 318, 394, 556
BspFNI CGCG 7 cut(s) 583, 596, 617, 619, 701, 723, 769
BspLI GGNNCC 2 cut(s) 226, 719
BspPI GGATC 3 cut(s) 26, 385, 683
BsrFI RCCGGY 2 cut(s) 98, 494
BssAI RCCGGY 2 cut(s) 98, 494
BssECI CCNNGG 2 cut(s) 721, 740
BssMI GATC 6 cut(s) 31, 148, 211, 377, 664, 675
BssNAI GTATAC 1 cut(s) 525
BssNI GRCGYC 2 cut(s) 516, 696
BssSI CACGAG 1 cut(s) 686
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 686
Bst4CI ACNGT 4 cut(s) 187, 331, 612, 832
Bst6I CTCTTC 2 cut(s) 39, 429
BstACI GRCGYC 2 cut(s) 516, 696
BstC8I GCNNGC 3 cut(s) 257, 396, 725
BstDEI CTNAG 6 cut(s) 293, 305, 381, 428, 543, 713
BstDSI CCRYGG 2 cut(s) 721, 740
BstEII GGTNACC 1 cut(s) 497
BstF5I GGATG 2 cut(s) 74, 667
BstFNI CGCG 7 cut(s) 583, 596, 617, 619, 701, 723, 769
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 6 cut(s) 34, 151, 214, 380, 667, 678
BstMAI GTCTC 6 cut(s) 65, 146, 375, 426, 546, 689
BstMBI GATC 6 cut(s) 31, 148, 211, 377, 664, 675
BstMWI GCNNNNNNNGC 6 cut(s) 78, 81, 87, 391, 631, 679
BstNSI RCATGY 1 cut(s) 344
BstPI GGTNACC 1 cut(s) 497
BstUI CGCG 7 cut(s) 583, 596, 617, 619, 701, 723, 769
BstV1I GCAGC 3 cut(s) 84, 93, 99
BstV2I GAAGAC 2 cut(s) 120, 129
BstX2I RGATCY 2 cut(s) 377, 675
BstYI RGATCY 2 cut(s) 377, 675
BstZ17I GTATAC 1 cut(s) 525
BsuRI GGCC 4 cut(s) 441, 452, 601, 873
BtgI CCRYGG 2 cut(s) 721, 740
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 2 cut(s) 74, 667
BtsIMutI CAGTG 1 cut(s) 27
BtuMI TCGCGA 1 cut(s) 596
Cac8I GCNNGC 3 cut(s) 257, 396, 725
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 2 cut(s) 98, 494
Cfr13I GGNCC 1 cut(s) 779
Cfr42I CCGCGG 1 cut(s) 724
CseI GACGC 4 cut(s) 671, 704, 739, 775
Csp6I GTAC 3 cut(s) 155, 338, 613
CviAII CATG 5 cut(s) 201, 341, 418, 503, 835
CviQI GTAC 3 cut(s) 155, 338, 613
DdeI CTNAG 6 cut(s) 293, 305, 381, 428, 543, 713
DpnI GATC 6 cut(s) 33, 150, 213, 379, 666, 677
DpnII GATC 6 cut(s) 31, 148, 211, 377, 664, 675
EaeI YGGCCR 2 cut(s) 439, 450
Eam1104I CTCTTC 2 cut(s) 39, 429
EarI CTCTTC 2 cut(s) 39, 429
EciI GGCGGA 3 cut(s) 498, 523, 726
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 58, 261
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 779
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 689
Eco91I GGTNACC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 497
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 2 cut(s) 58, 261
Esp3I CGTCTC 4 cut(s) 65, 375, 546, 689
FaeI CATG 5 cut(s) 204, 344, 421, 506, 838
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FatI CATG 5 cut(s) 200, 340, 417, 502, 834
FauI CCCGC 1 cut(s) 716
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 2 cut(s) 524, 825
Fnu4HI GCNGC 6 cut(s) 73, 82, 85, 88, 450, 699
FokI GGATG 2 cut(s) 81, 674
FriOI GRGCYC 2 cut(s) 58, 261
Fsp4HI GCNGC 6 cut(s) 73, 82, 85, 88, 450, 699
FspBI CTAG 2 cut(s) 12, 152
GlaI GCGC 1 cut(s) 618
GluI GCNGC 6 cut(s) 73, 82, 85, 88, 450, 699
HaeIII GGCC 4 cut(s) 441, 452, 601, 873
HapII CCGG 5 cut(s) 99, 480, 495, 638, 819
HgaI GACGC 4 cut(s) 671, 704, 739, 775
HhaI GCGC 1 cut(s) 619
Hin1I GRCGYC 2 cut(s) 516, 696
Hin1II CATG 5 cut(s) 204, 344, 421, 506, 838
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 9 cut(s) 131, 197, 218, 230, 236, 242, 314, 486, 751
HpaII CCGG 5 cut(s) 99, 480, 495, 638, 819
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 3 cut(s) 525, 813, 826
Hpy188III TCNNGA 3 cut(s) 12, 215, 595
Hpy8I GTNNAC 3 cut(s) 525, 813, 826
Hpy99I CGWCG 9 cut(s) 107, 131, 278, 518, 521, 566, 583, 653, 869
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 4 cut(s) 187, 331, 612, 832
HpyCH4IV ACGT 2 cut(s) 22, 516
HpyCH4V TGCA 4 cut(s) 41, 72, 459, 763
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 81, 87, 391, 631, 679
HpyF3I CTNAG 6 cut(s) 293, 305, 381, 428, 543, 713
HpySE526I ACGT 2 cut(s) 22, 516
Hsp92I GRCGYC 2 cut(s) 516, 696
Hsp92II CATG 5 cut(s) 204, 344, 421, 506, 838
HspAI GCGC 1 cut(s) 617
Ksp22I TGATCA 1 cut(s) 211
KspI CCGCGG 1 cut(s) 724
Kzo9I GATC 6 cut(s) 31, 148, 211, 377, 664, 675
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 3 cut(s) 84, 93, 99
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 12, 152
MaeII ACGT 2 cut(s) 22, 516
MaeIII GTNAC 3 cut(s) 25, 497, 692
MalI GATC 6 cut(s) 33, 150, 213, 379, 666, 677
MboI GATC 6 cut(s) 31, 148, 211, 377, 664, 675
MboII GAAGA 7 cut(s) 56, 125, 134, 182, 323, 416, 760
MflI RGATCY 2 cut(s) 377, 675
MhlI GDGCHC 2 cut(s) 58, 261
MluCI AATT 1 cut(s) 108
MlyI GAGTC 5 cut(s) 125, 206, 224, 236, 480
MmeI TCCRAC 4 cut(s) 46, 252, 631, 847
MnlI CCTC 8 cut(s) 40, 288, 487, 547, 591, 696, 738, 863
MseI TTAA 1 cut(s) 803
MslI CAYNNNNRTG 2 cut(s) 205, 833
MspA1I CMGCKG 2 cut(s) 84, 723
MspI CCGG 5 cut(s) 99, 480, 495, 638, 819
MvnI CGCG 7 cut(s) 583, 596, 617, 619, 701, 723, 769
MwoI GCNNNNNNNGC 6 cut(s) 78, 81, 87, 391, 631, 679
NdeII GATC 6 cut(s) 31, 148, 211, 377, 664, 675
NlaIII CATG 5 cut(s) 204, 344, 421, 506, 838
NlaIV GGNNCC 2 cut(s) 226, 719
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 2 cut(s) 25, 692
NruI TCGCGA 1 cut(s) 596
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 737, 861
PfeI GAWTC 4 cut(s) 218, 236, 314, 751
PflFI GACNNNGTC 1 cut(s) 830
PkrI GCNGC 6 cut(s) 74, 83, 86, 89, 451, 700
PleI GAGTC 5 cut(s) 125, 205, 224, 236, 480
PpsI GAGTC 5 cut(s) 125, 205, 224, 236, 480
PscI ACATGT 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 226, 719
PspPI GGNCC 1 cut(s) 779
PsuI RGATCY 2 cut(s) 377, 675
PsyI GACNNNGTC 1 cut(s) 830
RruI TCGCGA 1 cut(s) 596
RsaI GTAC 3 cut(s) 156, 339, 614
RsaNI GTAC 3 cut(s) 155, 338, 613
RseI CAYNNNNRTG 2 cut(s) 205, 833
SacI GAGCTC 1 cut(s) 261
SacII CCGCGG 1 cut(s) 724
SaqAI TTAA 1 cut(s) 803
SatI GCNGC 6 cut(s) 73, 82, 85, 88, 450, 699
Sau3AI GATC 6 cut(s) 31, 148, 211, 377, 664, 675
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 5 cut(s) 125, 206, 224, 236, 480
SduI GDGCHC 2 cut(s) 58, 261
SetI ASST 8 cut(s) 25, 51, 77, 261, 291, 417, 519, 532
SfaNI GCATC 1 cut(s) 59
Sfr303I CCGCGG 1 cut(s) 724
SgrBI CCGCGG 1 cut(s) 724
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 2 cut(s) 205, 833
Sse9I AATT 1 cut(s) 108
SspMI CTAG 2 cut(s) 12, 152
SstI GAGCTC 1 cut(s) 261
TaaI ACNGT 4 cut(s) 187, 331, 612, 832
TaiI ACGT 2 cut(s) 25, 519
TaqI TCGA 3 cut(s) 513, 564, 855
TasI AATT 1 cut(s) 108
TatI WGTACW 1 cut(s) 154
TauI GCSGC 3 cut(s) 87, 452, 701
TfiI GAWTC 4 cut(s) 218, 236, 314, 751
Tru1I TTAA 1 cut(s) 803
Tru9I TTAA 1 cut(s) 803
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 2 cut(s) 25, 692
TseI GCWGC 3 cut(s) 72, 81, 87
Tsp45I GTSAC 2 cut(s) 25, 692
TspDTI ATGAA 4 cut(s) 189, 306, 499, 547
TspGWI ACGGA 4 cut(s) 120, 336, 538, 542
TspRI CASTG 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 830
VpaK11BI GGWCC 1 cut(s) 779
XbaI TCTAGA 1 cut(s) 11
XceI RCATGY 1 cut(s) 344
XmiI GTMKAC 2 cut(s) 524, 825
XspI CTAG 2 cut(s) 12, 152
ZraI GACGTC 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.