RLG00000012822

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010118
Physical Location & Seq
Forward (+)
22736143 .. 22737572
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012822

Sequence Viewer

Length: 1056 bp
ATGACTCATGAACACGTGCCAGTCCCGTGCGCGAACAACCCCTCTCCCGTACGAATGGGGACCATCACTACAAGCTTCTTCAAATCCTCCAAAAGAGAGATCACAATCTACAGTCTATCAATGGCTGGTCTCGTCAGAACCAGAACCAAGAGAGTCACGTACCCGCTCGACGACAAGGTCAAGGCACGACTCGTCGGCCGGGAGAGCTACGTCAGCAGCGGCGACGACGTCTCTCCTTGTCTGTCCGAGCTCGTTCACAGCTTTCTCGAGGAGGAGGAGGAGGAAGAATCGTCGTCGTCGTCGTCCTCGGAGCAGCGGTCGCCGGACAACCGCGACTACGACTCGGACCGAGTCGACTCGGTCTCGGATCGTTCCGGCGCGGTGGAGTGCATTTTGAGATATTCGGTGAATGCGGACGCCTACGCCAAGGTGCTGCTTGCTGACGTGGCGGAGGCGGTGGAGGCGTTCTCGTGTCTGAGATCGGACAAGTCGGCTCTGCAGAGGAGCGTCATGTCGTTTCTGAGGGGGAAGGGGCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCAGCATCACCGCCGGGCACTACGAGTTCATCGACGTGGTAGCCGCCAGCTCGTCCCCCACGTGGCGGCAGCAGCAGCAGCAGCAGCAGAGCAGCAGGTACTTCGTGGACGTGGACTTCGCCGCCGAGTTCGAGATCGCGCGGCCGTCGGGCCAGTACTCGCGGCTGACGCAGTCGCTGCCACGTCACTTCGTCGGCGGCTCCGACGACCTGAAAAAGATAGTCCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAAAACCGTTACATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAACCCGTTGCCGGAGAATCCGCTCACGCGGACCTCGCCTCTGTTCCCACAGGTGTCTGGCGCCAAATGCCGTTGGGTCGGGTTCGACGACGTCGTGTCTGAGACCAGCGCCGTCACCGGCCGCGTCTTTATCCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

352

Amino Acids

39.25

Weight (kDa)

8.87

Isoelectric Point (pI)

64.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 82 - 303 3.3e-69 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 2 cut(s) 231, 1008
Acc36I ACCTGC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 974
AccBSI CCGCTC 2 cut(s) 166, 937
AccI GTMKAC 1 cut(s) 354
AccII CGCG 9 cut(s) 32, 333, 380, 713, 715, 736, 815, 943, 1038
AclWI GGATC 1 cut(s) 375
AcoI YGGCCR 3 cut(s) 196, 716, 1033
AcvI CACGTG 2 cut(s) 16, 636
AcyI GRCGYC 4 cut(s) 228, 417, 975, 1005
AfaI GTAC 6 cut(s) 51, 161, 674, 731, 902, 1051
AfiI CCNNNNNNNGG 3 cut(s) 636, 639, 925
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 82
AhdI GACNNNNNGTC 1 cut(s) 1009
AjiI CACGTC 4 cut(s) 445, 610, 685, 758
AluBI AGCT 7 cut(s) 75, 207, 250, 261, 567, 624, 844
AluI AGCT 7 cut(s) 75, 207, 250, 261, 567, 624, 844
Alw21I GWGCWC 2 cut(s) 252, 569
Alw26I GTCTC 4 cut(s) 134, 235, 367, 1010
AlwI GGATC 1 cut(s) 375
AlwNI CAGNNNCTG 1 cut(s) 751
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 5 cut(s) 196, 716, 724, 896, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
AspLEI GCGC 5 cut(s) 32, 380, 715, 977, 1025
AspS9I GGNCC 5 cut(s) 60, 346, 724, 896, 945
AsuC2I CCSGG 3 cut(s) 200, 589, 800
AsuHPI GGTGA 3 cut(s) 418, 574, 1021
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 3 cut(s) 60, 346, 945
BaeGI GKGCMC 2 cut(s) 537, 594
BanI GGYRCC 1 cut(s) 974
BanII GRGCYC 2 cut(s) 252, 569
BauI CACGAG 1 cut(s) 469
BbrPI CACGTG 2 cut(s) 16, 636
Bbv12I GWGCWC 2 cut(s) 252, 569
BbvCI CCTCAGC 1 cut(s) 830
BccI CCATC 1 cut(s) 71
BceAI ACGGC 4 cut(s) 703, 883, 969, 1010
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BcnI CCSGG 3 cut(s) 200, 589, 800
BcoDI GTCTC 4 cut(s) 134, 235, 367, 1010
BfmI CTRYAG 2 cut(s) 109, 497
BfoI RGCGCY 2 cut(s) 978, 1026
BfuAI ACCTGC 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 859
BmcAI AGTACT 1 cut(s) 731
Bme1390I CCNGG 3 cut(s) 200, 589, 800
Bme18I GGWCC 3 cut(s) 60, 346, 945
BmeRI GACNNNNNGTC 1 cut(s) 1009
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 4 cut(s) 445, 610, 685, 758
BmgT120I GGNCC 5 cut(s) 60, 346, 724, 896, 945
BmiI GGNNCC 4 cut(s) 61, 775, 836, 976
BmrFI CCNGG 3 cut(s) 200, 589, 800
BmsI GCATC 1 cut(s) 588
BplI GAGNNNNNCTC 2 cut(s) 452, 484
Bpu10I CCTNAGC 1 cut(s) 830
BpuMI CCSGG 3 cut(s) 200, 589, 800
BsaAI YACGTR 3 cut(s) 16, 159, 636
BsaBI GATNNNNATC 1 cut(s) 104
BsaHI GRCGYC 4 cut(s) 228, 417, 975, 1005
BsaI GGTCTC 3 cut(s) 134, 367, 1010
BsaJI CCNNGG 3 cut(s) 306, 426, 857
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 636, 639, 925
Bse118I RCCGGY 2 cut(s) 572, 1031
Bse1I ACTGG 2 cut(s) 20, 727
Bse8I GATNNNNATC 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 306, 426, 857
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 3 cut(s) 636, 639, 925
BseMII CTCAG 4 cut(s) 467, 512, 821, 1005
BseNI ACTGG 2 cut(s) 20, 727
BseRI GAGGAG 6 cut(s) 284, 287, 290, 293, 517, 847
BseSI GKGCMC 2 cut(s) 537, 594
BseX3I CGGCCG 3 cut(s) 196, 716, 1033
Bsh1236I CGCG 9 cut(s) 32, 333, 380, 713, 715, 736, 815, 943, 1038
Bsh1285I CGRYCG 4 cut(s) 199, 320, 719, 1036
BshFI GGCC 5 cut(s) 198, 718, 726, 898, 1035
BshNI GGYRCC 1 cut(s) 974
BsiEI CGRYCG 4 cut(s) 199, 320, 719, 1036
BsiHKAI GWGCWC 2 cut(s) 252, 569
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 8 cut(s) 199, 323, 375, 573, 588, 799, 926, 1032
BsiWI CGTACG 1 cut(s) 49
BslFI GGGAC 3 cut(s) 8, 73, 613
BslI CCNNNNNNNGG 3 cut(s) 636, 639, 925
BsmAI GTCTC 4 cut(s) 134, 235, 367, 1010
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 3 cut(s) 8, 73, 613
BsmI GAATGC 1 cut(s) 415
BsnI GGCC 5 cut(s) 198, 718, 726, 898, 1035
Bso31I GGTCTC 3 cut(s) 134, 367, 1010
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 4 cut(s) 252, 537, 569, 594
Bsp143I GATC 5 cut(s) 99, 367, 479, 546, 708
BspANI GGCC 5 cut(s) 198, 718, 726, 898, 1035
BspCNI CTCAG 4 cut(s) 468, 513, 822, 1006
BspFNI CGCG 9 cut(s) 32, 333, 380, 713, 715, 736, 815, 943, 1038
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 61, 775, 836, 976
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 660
BspPI GGATC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 974
BspTNI GGTCTC 3 cut(s) 134, 367, 1010
BsrBI CCGCTC 2 cut(s) 166, 937
BsrFI RCCGGY 2 cut(s) 572, 1031
BsrI ACTGG 2 cut(s) 20, 727
BssAI RCCGGY 2 cut(s) 572, 1031
BssECI CCNNGG 3 cut(s) 306, 426, 857
BssMI GATC 5 cut(s) 99, 367, 479, 546, 708
BssNI GRCGYC 4 cut(s) 228, 417, 975, 1005
BssSI CACGAG 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 4 cut(s) 113, 858, 872, 913
BstACI GRCGYC 4 cut(s) 228, 417, 975, 1005
BstAPI GCANNNNNTGC 1 cut(s) 751
BstBAI YACGTR 3 cut(s) 16, 159, 636
BstC8I GCNNGC 3 cut(s) 438, 574, 622
BstDEI CTNAG 5 cut(s) 476, 521, 830, 1014, 1053
BstDSI CCRYGG 1 cut(s) 857
BstFNI CGCG 9 cut(s) 32, 333, 380, 713, 715, 736, 815, 943, 1038
BstH2I RGCGCY 2 cut(s) 978, 1026
BstHHI GCGC 5 cut(s) 32, 380, 715, 977, 1025
BstKTI GATC 5 cut(s) 102, 370, 482, 549, 711
BstMAI GTCTC 4 cut(s) 134, 235, 367, 1010
BstMBI GATC 5 cut(s) 99, 367, 479, 546, 708
BstMCI CGRYCG 4 cut(s) 199, 320, 719, 1036
BstNSI RCATGY 1 cut(s) 880
BstSCI CCNGG 3 cut(s) 198, 587, 798
BstSFI CTRYAG 2 cut(s) 109, 497
BstSLI GKGCMC 2 cut(s) 537, 594
BstUI CGCG 9 cut(s) 32, 333, 380, 713, 715, 736, 815, 943, 1038
BstZI CGGCCG 3 cut(s) 196, 716, 1033
BsuRI GGCC 5 cut(s) 198, 718, 726, 898, 1035
BtgI CCRYGG 1 cut(s) 857
BtrI CACGTC 4 cut(s) 445, 610, 685, 758
BtsIMutI CAGTG 1 cut(s) 855
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 438, 574, 622
CaiI CAGNNNCTG 1 cut(s) 751
CciI TCATGA 1 cut(s) 7
CfoI GCGC 5 cut(s) 32, 380, 715, 977, 1025
Cfr10I RCCGGY 2 cut(s) 572, 1031
Cfr13I GGNCC 5 cut(s) 60, 346, 724, 896, 945
CpoI CGGWCCG 1 cut(s) 346
CseI GACGC 5 cut(s) 425, 496, 751, 821, 1027
Csp6I GTAC 6 cut(s) 50, 160, 673, 730, 901, 1050
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 4 cut(s) 8, 511, 805, 877
CviQI GTAC 6 cut(s) 50, 160, 673, 730, 901, 1050
DdeI CTNAG 5 cut(s) 476, 521, 830, 1014, 1053
DinI GGCGCC 1 cut(s) 976
DpnI GATC 5 cut(s) 101, 369, 481, 548, 710
DpnII GATC 5 cut(s) 99, 367, 479, 546, 708
DrdI GACNNNNNNGTC 1 cut(s) 176
DriI GACNNNNNGTC 1 cut(s) 1009
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 3 cut(s) 196, 716, 1033
EagI CGGCCG 3 cut(s) 196, 716, 1033
Eam1105I GACNNNNNGTC 1 cut(s) 1009
EciI GGCGGA 3 cut(s) 464, 559, 877
Ecl136II GAGCTC 2 cut(s) 250, 567
EclXI CGGCCG 3 cut(s) 196, 716, 1033
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 252, 569
Eco31I GGTCTC 3 cut(s) 134, 367, 1010
Eco47I GGWCC 3 cut(s) 60, 346, 945
Eco52I CGGCCG 3 cut(s) 196, 716, 1033
Eco53kI GAGCTC 2 cut(s) 250, 567
Eco72I CACGTG 2 cut(s) 16, 636
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 2 cut(s) 250, 567
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 2 cut(s) 252, 569
EgeI GGCGCC 1 cut(s) 976
EheI GGCGCC 1 cut(s) 976
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 4 cut(s) 11, 514, 808, 880
FaiI YATR 4 cut(s) 9, 512, 806, 878
FaqI GGGAC 3 cut(s) 8, 73, 613
FatI CATG 4 cut(s) 7, 510, 804, 876
FauI CCCGC 1 cut(s) 171
FblI GTMKAC 1 cut(s) 354
FriOI GRGCYC 2 cut(s) 252, 569
GlaI GCGC 5 cut(s) 31, 379, 714, 976, 1024
HaeII RGCGCY 2 cut(s) 978, 1026
HaeIII GGCC 5 cut(s) 198, 718, 726, 898, 1035
HapII CCGG 8 cut(s) 199, 323, 375, 573, 588, 799, 926, 1032
HgaI GACGC 5 cut(s) 425, 496, 751, 821, 1027
HhaI GCGC 5 cut(s) 32, 380, 715, 977, 1025
Hin1I GRCGYC 4 cut(s) 228, 417, 975, 1005
Hin1II CATG 4 cut(s) 11, 514, 808, 880
Hin6I GCGC 5 cut(s) 30, 378, 713, 975, 1023
HinP1I GCGC 5 cut(s) 30, 378, 713, 975, 1023
HincII GTYRAC 2 cut(s) 355, 916
HindII GTYRAC 2 cut(s) 355, 916
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 8 cut(s) 4, 153, 189, 287, 341, 351, 356, 931
HpaI GTTAAC 1 cut(s) 916
HpaII CCGG 8 cut(s) 199, 323, 375, 573, 588, 799, 926, 1032
HphI GGTGA 3 cut(s) 418, 574, 1021
Hpy166II GTNNAC 5 cut(s) 256, 355, 682, 688, 916
Hpy188III TCNNGA 3 cut(s) 8, 266, 706
Hpy8I GTNNAC 5 cut(s) 256, 355, 682, 688, 916
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 4 cut(s) 113, 858, 872, 913
HpyCH4V TGCA 4 cut(s) 390, 499, 552, 880
HpyF3I CTNAG 5 cut(s) 476, 521, 830, 1014, 1053
Hsp92I GRCGYC 4 cut(s) 228, 417, 975, 1005
Hsp92II CATG 4 cut(s) 11, 514, 808, 880
HspAI GCGC 5 cut(s) 30, 378, 713, 975, 1023
KasI GGCGCC 1 cut(s) 974
KroI GCCGGC 1 cut(s) 572
KroNI GCCGGC 1 cut(s) 574
KspAI GTTAAC 1 cut(s) 916
Kzo9I GATC 5 cut(s) 99, 367, 479, 546, 708
LmnI GCTCC 6 cut(s) 310, 504, 564, 572, 779, 834
LweI GCATC 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 154, 758, 872, 1027
MalI GATC 5 cut(s) 101, 369, 481, 548, 710
MbiI CCGCTC 2 cut(s) 166, 937
MboI GATC 5 cut(s) 99, 367, 479, 546, 708
MboII GAAGA 3 cut(s) 70, 296, 832
MhlI GDGCHC 4 cut(s) 252, 537, 569, 594
Mly113I GGCGCC 1 cut(s) 975
MlyI GAGTC 5 cut(s) 162, 183, 335, 350, 360
MmeI TCCRAC 1 cut(s) 801
MroNI GCCGGC 1 cut(s) 572
MseI TTAA 1 cut(s) 915
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 2 cut(s) 219, 316
MspI CCGG 8 cut(s) 199, 323, 375, 573, 588, 799, 926, 1032
MspR9I CCNGG 3 cut(s) 200, 589, 800
Mva1269I GAATGC 1 cut(s) 415
MvnI CGCG 9 cut(s) 32, 333, 380, 713, 715, 736, 815, 943, 1038
NaeI GCCGGC 1 cut(s) 574
NarI GGCGCC 1 cut(s) 975
NciI CCSGG 3 cut(s) 200, 589, 800
NdeII GATC 5 cut(s) 99, 367, 479, 546, 708
NgoMIV GCCGGC 1 cut(s) 572
NlaIII CATG 4 cut(s) 11, 514, 808, 880
NlaIV GGNNCC 4 cut(s) 61, 775, 836, 976
NmeAIII GCCGAG 2 cut(s) 724, 863
NmuCI GTSAC 3 cut(s) 154, 758, 1027
NspI RCATGY 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 266
PagI TCATGA 1 cut(s) 7
PcsI WCGNNNNNNNCGW 8 cut(s) 296, 299, 603, 632, 774, 917, 999, 1005
PctI GAATGC 1 cut(s) 415
PdiI GCCGGC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 287, 931
Pfl23II CGTACG 1 cut(s) 49
PflFI GACNNNGTC 6 cut(s) 176, 227, 350, 359, 745, 1004
PleI GAGTC 5 cut(s) 161, 183, 335, 350, 359
PluTI GGCGCC 1 cut(s) 978
PmaCI CACGTG 2 cut(s) 16, 636
PmlI CACGTG 2 cut(s) 16, 636
PpsI GAGTC 5 cut(s) 161, 183, 335, 350, 359
Ppu21I YACGTR 3 cut(s) 16, 159, 636
Psp124BI GAGCTC 2 cut(s) 252, 569
PspCI CACGTG 2 cut(s) 16, 636
PspLI CGTACG 1 cut(s) 49
PspN4I GGNNCC 4 cut(s) 61, 775, 836, 976
PspPI GGNCC 5 cut(s) 60, 346, 724, 896, 945
PstI CTGCAG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 751
PsyI GACNNNGTC 6 cut(s) 176, 227, 350, 359, 745, 1004
RsaI GTAC 6 cut(s) 51, 161, 674, 731, 902, 1051
RsaNI GTAC 6 cut(s) 50, 160, 673, 730, 901, 1050
RseI CAYNNNNRTG 1 cut(s) 608
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SacI GAGCTC 2 cut(s) 252, 569
SalI GTCGAC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 915
Sau3AI GATC 5 cut(s) 99, 367, 479, 546, 708
Sau96I GGNCC 5 cut(s) 60, 346, 724, 896, 945
ScaI AGTACT 1 cut(s) 731
SchI GAGTC 5 cut(s) 162, 183, 335, 350, 360
ScrFI CCNGG 3 cut(s) 200, 589, 800
SduI GDGCHC 4 cut(s) 252, 537, 569, 594
SfaNI GCATC 1 cut(s) 588
SfcI CTRYAG 2 cut(s) 109, 497
SfoI GGCGCC 1 cut(s) 976
Sfr274I CTCGAG 1 cut(s) 266
SinI GGWCC 3 cut(s) 60, 346, 945
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SspDI GGCGCC 1 cut(s) 974
SstI GAGCTC 2 cut(s) 252, 569
StyD4I CCNGG 3 cut(s) 198, 587, 798
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 4 cut(s) 113, 858, 872, 913
TaqI TCGA 6 cut(s) 168, 267, 354, 606, 705, 999
TaqII GACCGA 2 cut(s) 349, 363
TatI WGTACW 1 cut(s) 729
TfiI GAWTC 2 cut(s) 287, 931
Tru1I TTAA 1 cut(s) 915
Tru9I TTAA 1 cut(s) 915
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 3 cut(s) 154, 758, 1027
Tsp45I GTSAC 3 cut(s) 154, 758, 1027
TspDTI ATGAA 2 cut(s) 24, 592
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 1 cut(s) 855
Tth111I GACNNNGTC 6 cut(s) 176, 227, 350, 359, 745, 1004
VpaK11BI GGWCC 3 cut(s) 60, 346, 945
XceI RCATGY 1 cut(s) 880
XhoI CTCGAG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 354
ZraI GACGTC 2 cut(s) 229, 1006
ZrmI AGTACT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.