Rh6BG269600

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010118
Physical Location & Seq
Reverse (-)
48731241 .. 48733224
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG269600.1

Sequence Viewer

Length: 936 bp
ATGGCTGGTCTCGTCAGAACCAGAACCAAGAGAGTCACTTACCCGCTCGACGACAAGGTCAAGGCACGACTCGTCGGCCGGGAGAGCTACGTCAGCAGCGGCAGCGAGCACTCCGGCGGCGACGTCTCTCCTTGTCTGTCCGAGCTCGTTCACAGCTTTCTCGAGGAGGAGGAGGAGGAAGAATCGTCGACCTCGTCGTCGGAGCCGCGGTCGCCGGACAACCGCGACTACGACTCGGACCATGTCGACTCGGTCTCCGATCGTTCCGGCGCGGTGGAGTGCATTTTGAGATATTCGGCGAATGCGGACGCCTACGCCAAGGTGCTGCTCGCTGACGTGGCGGAGGCGGTGGAGGCGTTCTCGTGTCTGAGATCGGACAAGTCGGCCCTGCAGAGGAGCGTCATGTTGTTTCTGAGGGGGAAGGGGCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCAGCATCACCGCCGGGCACTACGAATTCATCGACGTGGTAGCCGCCAACTCGTCCGCCACGTGGCGGCAGCAGCAGAGCAGCAGGTACTTCGTGGACGTGGACTTCGCCGCCGAGTTCGAGATCGCGCGGCCGTCGGGCCAGTACTCGCGGCTGTCGCAGTCGCTGCCACGTCACTTCGTCGGCGGCTCCGACGACCTGAAAAAGATCGTCCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAAAACCGTTACATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAATCCGTTGCCGGAAAATCCGCTCACGCGGACCTCGCCTCTATTCCCACAGGTGTCTGGCGCCAAATGCCGTTGGGTCGGCTTCGACGACGTCGTTTCTGAGACCAGCGCCGTCACCGGCCGCGTCTTTATCCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

311

Amino Acids

34.6

Weight (kDa)

8.45

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 263 1.4e-69 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 196
AatII GACGTC 2 cut(s) 126, 888
Acc36I ACCTGC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 854
AccBSI CCGCTC 2 cut(s) 46, 817
AccI GTMKAC 2 cut(s) 188, 246
AccII CGCG 9 cut(s) 208, 225, 272, 593, 595, 616, 695, 823, 918
AcoI YGGCCR 3 cut(s) 76, 596, 913
AcsI RAATTY 1 cut(s) 491
AcvI CACGTG 1 cut(s) 528
AcyI GRCGYC 4 cut(s) 123, 309, 855, 885
AfaI GTAC 4 cut(s) 554, 611, 782, 931
AfiI CCNNNNNNNGG 3 cut(s) 393, 528, 531
AjiI CACGTC 4 cut(s) 337, 502, 565, 638
AluBI AGCT 5 cut(s) 87, 145, 156, 459, 724
AluI AGCT 5 cut(s) 87, 145, 156, 459, 724
Alw21I GWGCWC 3 cut(s) 111, 147, 461
Alw26I GTCTC 4 cut(s) 14, 130, 259, 890
AlwNI CAGNNNCTG 1 cut(s) 631
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 6 cut(s) 76, 384, 596, 604, 776, 913
ApeKI GCWGC 8 cut(s) 96, 102, 325, 468, 535, 538, 546, 631
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspLEI GCGC 4 cut(s) 272, 595, 857, 905
AspS9I GGNCC 5 cut(s) 238, 385, 604, 776, 825
AsuC2I CCSGG 3 cut(s) 80, 481, 680
AsuHPI GGTGA 2 cut(s) 466, 901
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 238, 825
BaeGI GKGCMC 2 cut(s) 429, 486
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 2 cut(s) 147, 461
BauI CACGAG 1 cut(s) 361
BbrPI CACGTG 1 cut(s) 528
Bbv12I GWGCWC 3 cut(s) 111, 147, 461
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 8 cut(s) 108, 114, 312, 480, 547, 550, 558, 618
BceAI ACGGC 4 cut(s) 583, 763, 849, 890
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BcnI CCSGG 3 cut(s) 80, 481, 680
BcoDI GTCTC 4 cut(s) 14, 130, 259, 890
BfmI CTRYAG 1 cut(s) 389
BfoI RGCGCY 2 cut(s) 858, 906
BfuAI ACCTGC 1 cut(s) 540
BglI GCCNNNNNGGC 1 cut(s) 739
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 3 cut(s) 80, 481, 680
Bme18I GGWCC 2 cut(s) 238, 825
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 4 cut(s) 337, 502, 565, 638
BmgT120I GGNCC 5 cut(s) 238, 385, 604, 776, 825
BmiI GGNNCC 4 cut(s) 204, 655, 716, 856
BmrFI CCNGG 3 cut(s) 80, 481, 680
BmsI GCATC 1 cut(s) 480
BplI GAGNNNNNCTC 2 cut(s) 344, 376
Bpu10I CCTNAGC 1 cut(s) 710
BpuMI CCSGG 3 cut(s) 80, 481, 680
BsaAI YACGTR 1 cut(s) 528
BsaHI GRCGYC 4 cut(s) 123, 309, 855, 885
BsaI GGTCTC 3 cut(s) 14, 259, 890
BsaJI CCNNGG 3 cut(s) 206, 318, 737
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 528, 531
Bse118I RCCGGY 2 cut(s) 464, 911
Bse1I ACTGG 1 cut(s) 607
BseDI CCNNGG 3 cut(s) 206, 318, 737
BseLI CCNNNNNNNGG 3 cut(s) 393, 528, 531
BseMII CTCAG 4 cut(s) 359, 404, 701, 885
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 6 cut(s) 179, 182, 185, 188, 409, 727
BseSI GKGCMC 2 cut(s) 429, 486
BseX3I CGGCCG 3 cut(s) 76, 596, 913
BseXI GCAGC 8 cut(s) 108, 114, 312, 480, 547, 550, 558, 618
Bsh1236I CGCG 9 cut(s) 208, 225, 272, 593, 595, 616, 695, 823, 918
Bsh1285I CGRYCG 5 cut(s) 79, 212, 262, 599, 916
BshFI GGCC 6 cut(s) 78, 386, 598, 606, 778, 915
BshNI GGYRCC 1 cut(s) 854
BsiEI CGRYCG 5 cut(s) 79, 212, 262, 599, 916
BsiHKAI GWGCWC 3 cut(s) 111, 147, 461
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 9 cut(s) 79, 114, 215, 267, 465, 480, 679, 806, 912
BslI CCNNNNNNNGG 3 cut(s) 393, 528, 531
BsmAI GTCTC 4 cut(s) 14, 130, 259, 890
BsmBI CGTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 6 cut(s) 78, 386, 598, 606, 778, 915
Bso31I GGTCTC 3 cut(s) 14, 259, 890
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 111, 147, 429, 461, 486
Bsp143I GATC 5 cut(s) 259, 371, 438, 588, 672
BspANI GGCC 6 cut(s) 78, 386, 598, 606, 778, 915
BspCNI CTCAG 4 cut(s) 360, 405, 702, 886
BspFNI CGCG 9 cut(s) 208, 225, 272, 593, 595, 616, 695, 823, 918
BspLI GGNNCC 4 cut(s) 204, 655, 716, 856
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 3 cut(s) 14, 259, 890
BsrBI CCGCTC 2 cut(s) 46, 817
BsrFI RCCGGY 2 cut(s) 464, 911
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 2 cut(s) 464, 911
BssECI CCNNGG 3 cut(s) 206, 318, 737
BssMI GATC 5 cut(s) 259, 371, 438, 588, 672
BssNI GRCGYC 4 cut(s) 123, 309, 855, 885
BssSI CACGAG 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 738, 752, 793
BstACI GRCGYC 4 cut(s) 123, 309, 855, 885
BstAPI GCANNNNNTGC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 107, 330, 466
BstDEI CTNAG 5 cut(s) 368, 413, 710, 894, 933
BstDSI CCRYGG 2 cut(s) 206, 737
BstFNI CGCG 9 cut(s) 208, 225, 272, 593, 595, 616, 695, 823, 918
BstH2I RGCGCY 2 cut(s) 858, 906
BstHHI GCGC 4 cut(s) 272, 595, 857, 905
BstKTI GATC 5 cut(s) 262, 374, 441, 591, 675
BstMAI GTCTC 4 cut(s) 14, 130, 259, 890
BstMBI GATC 5 cut(s) 259, 371, 438, 588, 672
BstMCI CGRYCG 5 cut(s) 79, 212, 262, 599, 916
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 3 cut(s) 78, 479, 678
BstSFI CTRYAG 1 cut(s) 389
BstSLI GKGCMC 2 cut(s) 429, 486
BstUI CGCG 9 cut(s) 208, 225, 272, 593, 595, 616, 695, 823, 918
BstV1I GCAGC 8 cut(s) 108, 114, 312, 480, 547, 550, 558, 618
BstZI CGGCCG 3 cut(s) 76, 596, 913
BsuRI GGCC 6 cut(s) 78, 386, 598, 606, 778, 915
BtgI CCRYGG 2 cut(s) 206, 737
BtrI CACGTC 4 cut(s) 337, 502, 565, 638
BtsIMutI CAGTG 1 cut(s) 735
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 3 cut(s) 107, 330, 466
CaiI CAGNNNCTG 1 cut(s) 631
CfoI GCGC 4 cut(s) 272, 595, 857, 905
Cfr10I RCCGGY 2 cut(s) 464, 911
Cfr13I GGNCC 5 cut(s) 238, 385, 604, 776, 825
Cfr42I CCGCGG 1 cut(s) 209
CseI GACGC 4 cut(s) 317, 388, 701, 907
Csp6I GTAC 4 cut(s) 553, 610, 781, 930
CviAII CATG 4 cut(s) 242, 403, 685, 757
CviQI GTAC 4 cut(s) 553, 610, 781, 930
DdeI CTNAG 5 cut(s) 368, 413, 710, 894, 933
DinI GGCGCC 1 cut(s) 856
DpnI GATC 5 cut(s) 261, 373, 440, 590, 674
DpnII GATC 5 cut(s) 259, 371, 438, 588, 672
DrdI GACNNNNNNGTC 2 cut(s) 56, 196
DseDI GACNNNNNNGTC 2 cut(s) 56, 196
EaeI YGGCCR 3 cut(s) 76, 596, 913
EagI CGGCCG 3 cut(s) 76, 596, 913
EciI GGCGGA 4 cut(s) 356, 451, 511, 757
Ecl136II GAGCTC 2 cut(s) 145, 459
EclXI CGGCCG 3 cut(s) 76, 596, 913
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 147, 461
Eco31I GGTCTC 3 cut(s) 14, 259, 890
Eco47I GGWCC 2 cut(s) 238, 825
Eco52I CGGCCG 3 cut(s) 76, 596, 913
Eco53kI GAGCTC 2 cut(s) 145, 459
Eco72I CACGTG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 2 cut(s) 145, 459
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 147, 461
EgeI GGCGCC 1 cut(s) 856
EheI GGCGCC 1 cut(s) 856
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 4 cut(s) 245, 406, 688, 760
FaiI YATR 4 cut(s) 243, 404, 686, 758
FatI CATG 4 cut(s) 241, 402, 684, 756
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 2 cut(s) 188, 246
FriOI GRGCYC 2 cut(s) 147, 461
GlaI GCGC 4 cut(s) 271, 594, 856, 904
HaeII RGCGCY 2 cut(s) 858, 906
HaeIII GGCC 6 cut(s) 78, 386, 598, 606, 778, 915
HapII CCGG 9 cut(s) 79, 114, 215, 267, 465, 480, 679, 806, 912
HgaI GACGC 4 cut(s) 317, 388, 701, 907
HhaI GCGC 4 cut(s) 272, 595, 857, 905
Hin1I GRCGYC 4 cut(s) 123, 309, 855, 885
Hin1II CATG 4 cut(s) 245, 406, 688, 760
Hin6I GCGC 4 cut(s) 270, 593, 855, 903
HinP1I GCGC 4 cut(s) 270, 593, 855, 903
HincII GTYRAC 2 cut(s) 189, 247
HindII GTYRAC 2 cut(s) 189, 247
HinfI GANTC 5 cut(s) 33, 69, 182, 233, 248
HpaII CCGG 9 cut(s) 79, 114, 215, 267, 465, 480, 679, 806, 912
HphI GGTGA 2 cut(s) 466, 901
Hpy166II GTNNAC 5 cut(s) 151, 189, 247, 562, 568
Hpy188III TCNNGA 2 cut(s) 161, 586
Hpy8I GTNNAC 5 cut(s) 151, 189, 247, 562, 568
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 3 cut(s) 738, 752, 793
HpyCH4IV ACGT 8 cut(s) 90, 123, 336, 501, 527, 564, 637, 885
HpyCH4V TGCA 4 cut(s) 282, 391, 444, 760
HpyF3I CTNAG 5 cut(s) 368, 413, 710, 894, 933
HpySE526I ACGT 8 cut(s) 90, 123, 336, 501, 527, 564, 637, 885
Hsp92I GRCGYC 4 cut(s) 123, 309, 855, 885
Hsp92II CATG 4 cut(s) 245, 406, 688, 760
HspAI GCGC 4 cut(s) 270, 593, 855, 903
KasI GGCGCC 1 cut(s) 854
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
KspI CCGCGG 1 cut(s) 209
Kzo9I GATC 5 cut(s) 259, 371, 438, 588, 672
LmnI GCTCC 6 cut(s) 202, 396, 456, 464, 659, 714
Lsp1109I GCAGC 8 cut(s) 108, 114, 312, 480, 547, 550, 558, 618
LweI GCATC 1 cut(s) 480
MaeII ACGT 8 cut(s) 90, 123, 336, 501, 527, 564, 637, 885
MaeIII GTNAC 4 cut(s) 34, 638, 752, 907
MalI GATC 5 cut(s) 261, 373, 440, 590, 674
MbiI CCGCTC 2 cut(s) 46, 817
MboI GATC 5 cut(s) 259, 371, 438, 588, 672
MboII GAAGA 2 cut(s) 191, 712
MhlI GDGCHC 5 cut(s) 111, 147, 429, 461, 486
MluCI AATT 1 cut(s) 491
Mly113I GGCGCC 1 cut(s) 855
MlyI GAGTC 4 cut(s) 42, 63, 227, 242
MmeI TCCRAC 2 cut(s) 180, 681
MroNI GCCGGC 1 cut(s) 464
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 2 cut(s) 99, 208
MspI CCGG 9 cut(s) 79, 114, 215, 267, 465, 480, 679, 806, 912
MspR9I CCNGG 3 cut(s) 80, 481, 680
Mva1269I GAATGC 1 cut(s) 307
MvnI CGCG 9 cut(s) 208, 225, 272, 593, 595, 616, 695, 823, 918
NaeI GCCGGC 1 cut(s) 466
NarI GGCGCC 1 cut(s) 855
NciI CCSGG 3 cut(s) 80, 481, 680
NdeII GATC 5 cut(s) 259, 371, 438, 588, 672
NgoMIV GCCGGC 1 cut(s) 464
NlaIII CATG 4 cut(s) 245, 406, 688, 760
NlaIV GGNNCC 4 cut(s) 204, 655, 716, 856
NmeAIII GCCGAG 2 cut(s) 604, 743
NmuCI GTSAC 3 cut(s) 34, 638, 907
NspI RCATGY 1 cut(s) 760
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 8 cut(s) 191, 194, 495, 524, 654, 797, 879, 885
PctI GAATGC 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 466
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 5 cut(s) 56, 193, 242, 251, 884
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 4 cut(s) 41, 63, 227, 242
PluTI GGCGCC 1 cut(s) 858
PmaCI CACGTG 1 cut(s) 528
PmlI CACGTG 1 cut(s) 528
PpsI GAGTC 4 cut(s) 41, 63, 227, 242
Ppu21I YACGTR 1 cut(s) 528
Psp124BI GAGCTC 2 cut(s) 147, 461
PspCI CACGTG 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 204, 655, 716, 856
PspPI GGNCC 5 cut(s) 238, 385, 604, 776, 825
PstI CTGCAG 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 631
PsyI GACNNNGTC 5 cut(s) 56, 193, 242, 251, 884
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 4 cut(s) 554, 611, 782, 931
RsaNI GTAC 4 cut(s) 553, 610, 781, 930
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 2 cut(s) 147, 461
SacII CCGCGG 1 cut(s) 209
SalI GTCGAC 2 cut(s) 187, 245
SaqAI TTAA 1 cut(s) 795
Sau3AI GATC 5 cut(s) 259, 371, 438, 588, 672
Sau96I GGNCC 5 cut(s) 238, 385, 604, 776, 825
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 4 cut(s) 42, 63, 227, 242
ScrFI CCNGG 3 cut(s) 80, 481, 680
SduI GDGCHC 5 cut(s) 111, 147, 429, 461, 486
SfaNI GCATC 1 cut(s) 480
SfcI CTRYAG 1 cut(s) 389
SfoI GGCGCC 1 cut(s) 856
Sfr274I CTCGAG 1 cut(s) 161
Sfr303I CCGCGG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 209
SinI GGWCC 2 cut(s) 238, 825
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 491
SspDI GGCGCC 1 cut(s) 854
SstI GAGCTC 2 cut(s) 147, 461
StyD4I CCNGG 3 cut(s) 78, 479, 678
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 738, 752, 793
TaiI ACGT 8 cut(s) 93, 126, 339, 504, 530, 567, 640, 888
TaqI TCGA 7 cut(s) 48, 162, 188, 246, 498, 585, 879
TaqII GACCGA 1 cut(s) 241
TasI AATT 1 cut(s) 491
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 3 cut(s) 34, 638, 907
TseI GCWGC 8 cut(s) 96, 102, 325, 468, 535, 538, 546, 631
Tsp45I GTSAC 3 cut(s) 34, 638, 907
TspDTI ATGAA 1 cut(s) 484
TspGWI ACGGA 2 cut(s) 789, 917
TspRI CASTG 1 cut(s) 735
Tth111I GACNNNGTC 5 cut(s) 56, 193, 242, 251, 884
VpaK11BI GGWCC 2 cut(s) 238, 825
XapI RAATTY 1 cut(s) 491
XceI RCATGY 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 188, 246
ZraI GACGTC 2 cut(s) 124, 886
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.