MD10G1156000.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010118
Physical Location & Seq
Reverse (-)
24415330 .. 24416262
933 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1156000.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGCTGGTTTTGTTAGAACGAGATCGAAGCGGGTCACTTACCCGCTAGACGACCGGGTAAAAGATCGACTCGTAGGCGGATACAGCTCCGGACTTAGTGACGCCAGCAAAGGAAGCGAGCACTCCGGCGACTACGACTCCCCCTGCCTCTCCGAGCTCGTCCACGACTTCCTCCACCAGGACGAGTCGTCCGCGGCTGGGTTTCCCGACAACGAGTCCGACTCGGAACGAGTCGAATCGGGCTCCAATACGGACGCGATCGACTCCGTCCTCAGATCCGTTGCCGTTTCCAGAAATGCGGATTCGTACCTGAAGCTGCTCCGCTCTCACGTCTCCCAGGCGGCAGAGGCTTTCGCGTGTTTGAGGTCCAACGGCGGCGGAAGCAGCGAGTCCACTCTGCGGCGGAGCGTGATGTCGTTTCTGAGAGGACTGGGACACAATGCCGCGATCTGCAAGACGAAATGGACCTCCTCCGGCAACATCACCGCCGGGAGCTACGAGTTCATAGACGTCGTACCCGTCCCATCCGGCTCCTCCACGTGGCAGAGCAGGTACTTCGTGGACTTCGACTTCGCCGCCGAGTTTGAAATAGCTCGGCCGTCGAGCCAGTACTCGCGGCTGCTGCAGCATCTGCCGAGAGACTTCGTAGGCAGCTCGGAGGATCTGAAGCGGATCGTGCGGGTCACGAGCGACGCGGCGAAGAGATCGCTGAGGAGTACGGATCTCTCCGTGCCTCCGTGGCGGAAGAATCGTTATATGCAGAACAAGTGGTTCGGTCCTTACAAACGAACCGTGAATCCGATGAAGGAGAAAGCCTTCTCAAGAGACTCGGCCATTTTTGCTCCTGTATCTGCAGCCAAATGCCGCTGGGTTGGGTTTGACGACGCCGTTTCCGGCTCTACCATCAACCGCCGTCTCTATGTCCGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

311

Amino Acids

34.35

Weight (kDa)

9.23

Isoelectric Point (pI)

65.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 52 - 263 4.8e-65 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 540
AccBSI CCGCTC 1 cut(s) 324
AccII CGCG 6 cut(s) 194, 257, 356, 446, 616, 695
AccIII TCCGGA 1 cut(s) 89
AclWI GGATC 4 cut(s) 270, 669, 680, 729
AcoI YGGCCR 2 cut(s) 596, 831
AcuI CTGAAG 2 cut(s) 332, 686
AcvI CACGTG 1 cut(s) 540
AcyI GRCGYC 3 cut(s) 102, 510, 885
AfaI GTAC 6 cut(s) 308, 516, 554, 611, 718, 928
AfiI CCNNNNNNNGG 4 cut(s) 178, 198, 399, 540
AgsI TTSAA 1 cut(s) 587
AhdI GACNNNNNGTC 2 cut(s) 187, 214
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 2 cut(s) 177, 336
AloI GAACNNNNNNTCC 2 cut(s) 781, 813
AluBI AGCT 6 cut(s) 87, 157, 316, 495, 593, 654
AluI AGCT 6 cut(s) 87, 157, 316, 495, 593, 654
Alw21I GWGCWC 2 cut(s) 123, 159
Alw26I GTCTC 4 cut(s) 337, 633, 819, 920
AlwI GGATC 4 cut(s) 270, 669, 680, 729
AlwNI CAGNNNCTG 1 cut(s) 631
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 2 cut(s) 596, 831
ApeKI GCWGC 7 cut(s) 316, 384, 619, 622, 625, 651, 854
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
Asp700I GAANNNNTTC 1 cut(s) 815
AspS9I GGNCC 3 cut(s) 366, 465, 776
AsuC2I CCSGG 2 cut(s) 56, 490
AsuHPI GGTGA 1 cut(s) 475
AvaII GGWCC 3 cut(s) 366, 465, 776
BanII GRGCYC 2 cut(s) 159, 245
BauI CACGAG 1 cut(s) 685
BbrPI CACGTG 1 cut(s) 540
Bbv12I GWGCWC 2 cut(s) 123, 159
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 7 cut(s) 303, 396, 606, 609, 637, 663, 866
BccI CCATC 2 cut(s) 532, 911
BceAI ACGGC 5 cut(s) 269, 388, 583, 872, 897
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 2 cut(s) 179, 338
BciVI GTATCC 1 cut(s) 74
BcnI CCSGG 2 cut(s) 56, 490
BcoDI GTCTC 4 cut(s) 337, 633, 819, 920
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 623, 852
BfuAI ACCTGC 1 cut(s) 540
BfuI GTATCC 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 739
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 4 cut(s) 56, 179, 338, 490
Bme18I GGWCC 3 cut(s) 366, 465, 776
BmeRI GACNNNNNGTC 2 cut(s) 187, 214
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 366, 465, 776
BmiI GGNNCC 2 cut(s) 244, 532
BmrFI CCNGG 4 cut(s) 56, 179, 338, 490
BmrI ACTGGG 1 cut(s) 440
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 206, 238
Bpu10I CCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 805
BpuMI CCSGG 2 cut(s) 56, 490
BsaAI YACGTR 1 cut(s) 540
BsaHI GRCGYC 3 cut(s) 102, 510, 885
BsaJI CCNNGG 3 cut(s) 192, 336, 737
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 198, 399, 540
Bse1I ACTGG 2 cut(s) 435, 607
BseAI TCCGGA 1 cut(s) 89
BseBI CCWGG 2 cut(s) 179, 338
BseDI CCNNGG 3 cut(s) 192, 336, 737
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 4 cut(s) 178, 198, 399, 540
BseMII CTCAG 3 cut(s) 286, 413, 701
BseNI ACTGG 2 cut(s) 435, 607
BseRI GAGGAG 3 cut(s) 460, 523, 727
BseX3I CGGCCG 1 cut(s) 596
BseXI GCAGC 7 cut(s) 303, 396, 606, 609, 637, 663, 866
BseYI CCCAGC 2 cut(s) 197, 867
Bsh1236I CGCG 6 cut(s) 194, 257, 356, 446, 616, 695
Bsh1285I CGRYCG 3 cut(s) 55, 261, 599
BshFI GGCC 2 cut(s) 598, 833
BsiEI CGRYCG 3 cut(s) 55, 261, 599
BsiHKAI GWGCWC 2 cut(s) 123, 159
BsiSI CCGG 7 cut(s) 55, 90, 126, 474, 489, 528, 894
BslFI GGGAC 2 cut(s) 447, 506
BslI CCNNNNNNNGG 4 cut(s) 178, 198, 399, 540
BsmAI GTCTC 4 cut(s) 337, 633, 819, 920
BsmBI CGTCTC 2 cut(s) 337, 920
BsmFI GGGAC 2 cut(s) 447, 506
BsnI GGCC 2 cut(s) 598, 833
Bsp1286I GDGCHC 3 cut(s) 123, 159, 245
Bsp13I TCCGGA 1 cut(s) 89
Bsp143I GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
BspANI GGCC 2 cut(s) 598, 833
BspCNI CTCAG 3 cut(s) 285, 414, 702
BspEI TCCGGA 1 cut(s) 89
BspFNI CGCG 6 cut(s) 194, 257, 356, 446, 616, 695
BspLI GGNNCC 2 cut(s) 244, 532
BspMAI CTGCAG 2 cut(s) 627, 856
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 4 cut(s) 270, 669, 680, 729
BsrBI CCGCTC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 435, 607
BssECI CCNNGG 3 cut(s) 192, 336, 737
BssMI GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
BssNI GRCGYC 3 cut(s) 102, 510, 885
BssSI CACGAG 1 cut(s) 685
Bst2BI CACGAG 1 cut(s) 685
Bst2UI CCWGG 2 cut(s) 179, 338
Bst4CI ACNGT 1 cut(s) 793
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 3 cut(s) 102, 510, 885
BstAPI GCANNNNNTGC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 106, 119
BstDEI CTNAG 4 cut(s) 95, 272, 422, 710
BstDSI CCRYGG 2 cut(s) 192, 737
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 524
BstFNI CGCG 6 cut(s) 194, 257, 356, 446, 616, 695
BstKTI GATC 9 cut(s) 26, 67, 261, 278, 450, 664, 675, 707, 724
BstMAI GTCTC 4 cut(s) 337, 633, 819, 920
BstMBI GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
BstMCI CGRYCG 3 cut(s) 55, 261, 599
BstNI CCWGG 2 cut(s) 179, 338
BstSCI CCNGG 4 cut(s) 54, 177, 336, 488
BstSFI CTRYAG 2 cut(s) 623, 852
BstUI CGCG 6 cut(s) 194, 257, 356, 446, 616, 695
BstV1I GCAGC 7 cut(s) 303, 396, 606, 609, 637, 663, 866
BstX2I RGATCY 3 cut(s) 275, 661, 721
BstYI RGATCY 3 cut(s) 275, 661, 721
BstZI CGGCCG 1 cut(s) 596
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 598, 833
BtgI CCRYGG 2 cut(s) 192, 737
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 524
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 106, 119
CaiI CAGNNNCTG 1 cut(s) 631
Cfr13I GGNCC 3 cut(s) 366, 465, 776
Cfr42I CCGCGG 1 cut(s) 195
CseI GACGC 4 cut(s) 110, 263, 701, 893
Csp6I GTAC 6 cut(s) 307, 515, 553, 610, 717, 927
CviQI GTAC 6 cut(s) 307, 515, 553, 610, 717, 927
DdeI CTNAG 4 cut(s) 95, 272, 422, 710
DpnI GATC 9 cut(s) 25, 66, 260, 277, 449, 663, 674, 706, 723
DpnII GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
DriI GACNNNNNGTC 2 cut(s) 187, 214
EaeI YGGCCR 2 cut(s) 596, 831
EagI CGGCCG 1 cut(s) 596
Eam1104I CTCTTC 1 cut(s) 695
Eam1105I GACNNNNNGTC 2 cut(s) 187, 214
EarI CTCTTC 1 cut(s) 695
EciI GGCGGA 4 cut(s) 93, 393, 418, 757
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 596
Eco24I GRGCYC 2 cut(s) 159, 245
Eco47I GGWCC 3 cut(s) 366, 465, 776
Eco52I CGGCCG 1 cut(s) 596
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 332, 686
Eco72I CACGTG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 177, 336
EcoT38I GRGCYC 2 cut(s) 159, 245
Esp3I CGTCTC 2 cut(s) 337, 920
FaiI YATR 4 cut(s) 506, 756, 758, 921
FaqI GGGAC 2 cut(s) 447, 506
FauI CCCGC 3 cut(s) 24, 51, 672
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 2 cut(s) 159, 245
FspBI CTAG 1 cut(s) 47
GsaI CCCAGC 2 cut(s) 201, 871
HaeIII GGCC 2 cut(s) 598, 833
HapII CCGG 7 cut(s) 55, 90, 126, 474, 489, 528, 894
HgaI GACGC 4 cut(s) 110, 263, 701, 893
Hin1I GRCGYC 3 cut(s) 102, 510, 885
HpaII CCGG 7 cut(s) 55, 90, 126, 474, 489, 528, 894
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 3 cut(s) 163, 393, 562
Hpy188I TCNGA 8 cut(s) 154, 220, 226, 275, 423, 658, 666, 801
Hpy188III TCNNGA 5 cut(s) 90, 206, 291, 685, 822
Hpy8I GTNNAC 3 cut(s) 163, 393, 562
Hpy99I CGWCG 4 cut(s) 515, 604, 695, 887
HpyAV CCTTC 2 cut(s) 799, 826
HpyCH4III ACNGT 1 cut(s) 793
HpyCH4IV ACGT 3 cut(s) 330, 510, 539
HpyCH4V TGCA 4 cut(s) 453, 625, 760, 854
HpyF3I CTNAG 4 cut(s) 95, 272, 422, 710
HpySE526I ACGT 3 cut(s) 330, 510, 539
Hsp92I GRCGYC 3 cut(s) 102, 510, 885
Kpn2I TCCGGA 1 cut(s) 89
KspI CCGCGG 1 cut(s) 195
Kzo9I GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
LmnI GCTCC 7 cut(s) 92, 248, 324, 405, 492, 536, 847
Lsp1109I GCAGC 7 cut(s) 303, 396, 606, 609, 637, 663, 866
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 47
MaeII ACGT 3 cut(s) 330, 510, 539
MaeIII GTNAC 3 cut(s) 34, 98, 682
MalI GATC 9 cut(s) 25, 66, 260, 277, 449, 663, 674, 706, 723
MbiI CCGCTC 1 cut(s) 324
MboI GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
MboII GAAGA 2 cut(s) 712, 757
MflI RGATCY 3 cut(s) 275, 661, 721
MhlI GDGCHC 3 cut(s) 123, 159, 245
MlyI GAGTC 9 cut(s) 63, 131, 194, 215, 224, 240, 257, 398, 821
MmeI TCCRAC 2 cut(s) 243, 393
MroI TCCGGA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 815
MseI TTAA 1 cut(s) 931
MspA1I CMGCKG 2 cut(s) 194, 867
MspI CCGG 7 cut(s) 55, 90, 126, 474, 489, 528, 894
MspR9I CCNGG 4 cut(s) 56, 179, 338, 490
MvaI CCWGG 2 cut(s) 179, 338
MvnI CGCG 6 cut(s) 194, 257, 356, 446, 616, 695
NciI CCSGG 2 cut(s) 56, 490
NdeII GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
NlaIV GGNNCC 2 cut(s) 244, 532
NmeAIII GCCGAG 4 cut(s) 574, 604, 660, 809
NmuCI GTSAC 3 cut(s) 34, 98, 682
PcsI WCGNNNNNNNCGW 2 cut(s) 516, 564
PdmI GAANNNNTTC 1 cut(s) 815
PfeI GAWTC 4 cut(s) 236, 302, 748, 796
PflFI GACNNNGTC 1 cut(s) 266
Ple19I CGATCG 1 cut(s) 261
PleI GAGTC 9 cut(s) 63, 131, 193, 215, 223, 239, 257, 397, 821
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
PpsI GAGTC 9 cut(s) 63, 131, 193, 215, 223, 239, 257, 397, 821
Ppu21I YACGTR 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 177, 336
PspCI CACGTG 1 cut(s) 540
PspFI CCCAGC 2 cut(s) 197, 867
PspGI CCWGG 2 cut(s) 177, 336
PspN4I GGNNCC 2 cut(s) 244, 532
PspPI GGNCC 3 cut(s) 366, 465, 776
PstI CTGCAG 2 cut(s) 627, 856
PstNI CAGNNNCTG 1 cut(s) 631
PsuI RGATCY 3 cut(s) 275, 661, 721
PsyI GACNNNGTC 1 cut(s) 266
PvuI CGATCG 1 cut(s) 261
RsaI GTAC 6 cut(s) 308, 516, 554, 611, 718, 928
RsaNI GTAC 6 cut(s) 307, 515, 553, 610, 717, 927
SacI GAGCTC 1 cut(s) 159
SacII CCGCGG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 931
Sau3AI GATC 9 cut(s) 23, 64, 258, 275, 447, 661, 672, 704, 721
Sau96I GGNCC 3 cut(s) 366, 465, 776
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 9 cut(s) 63, 131, 194, 215, 224, 240, 257, 398, 821
ScrFI CCNGG 4 cut(s) 56, 179, 338, 490
SduI GDGCHC 3 cut(s) 123, 159, 245
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 2 cut(s) 623, 852
Sfr303I CCGCGG 1 cut(s) 195
SgrBI CCGCGG 1 cut(s) 195
SinI GGWCC 3 cut(s) 366, 465, 776
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 4 cut(s) 54, 177, 336, 488
TaaI ACNGT 1 cut(s) 793
TaiI ACGT 3 cut(s) 333, 513, 542
TaqI TCGA 6 cut(s) 26, 67, 234, 261, 567, 602
TaqII GACCGA 1 cut(s) 764
TatI WGTACW 1 cut(s) 609
TauI GCSGC 9 cut(s) 197, 344, 378, 403, 446, 578, 619, 698, 867
TfiI GAWTC 4 cut(s) 236, 302, 748, 796
Tru1I TTAA 1 cut(s) 931
Tru9I TTAA 1 cut(s) 931
TseFI GTSAC 3 cut(s) 34, 98, 682
TseI GCWGC 7 cut(s) 316, 384, 619, 622, 625, 651, 854
Tsp45I GTSAC 3 cut(s) 34, 98, 682
TspDTI ATGAA 2 cut(s) 493, 818
TspGWI ACGGA 7 cut(s) 256, 266, 268, 718, 726, 734, 914
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 366, 465, 776
XagI CCTNNNNNAGG 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 815
XspI CTAG 1 cut(s) 47
ZraI GACGTC 1 cut(s) 511
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.