FvH4_2g18090

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010118
Physical Location & Seq
Reverse (-)
15486282 .. 15487211
930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18090.t1

Sequence Viewer

Length: 930 bp
ATGGCTGGTTTAGTCAGAACCAGAACCAAGAGAGTCACTTACCCGCTAGACGACAGGGTCAAGGCTCGCCTCGTCGGCCGGGAGAGCTACTTCAGCAGCGGCAGCGACCACTCCGCCGCCGACGACGACGTCTCGCCTTGCCTCTCCGAGCTCGTGTACAGCTTTCTCGAGGAGGAGGAATCGTCGTCGTCGGAGTCGCGCTCGCCGCACAACGACGACGACTACGACTCGGACCCGGTCGACTCGGTCTCGGATCGGTCTTCCGGCGCGGTCGAGTGCATTTTGAGATCGTCGGCGGCGACTGCGGACTCCTACGCCAAGGTGCTGCTTGCTGACGTGGCGGAGGCGGTGGAGGCGTTCGCGTGTCTGAGATCGGACAAGTCGGCCCTGCAGCGGAGCGTCATGTCGTTTTTGAGGGGGAAGGGTCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCGGCATCACCGCCGGGCACTACGAGTTCATCGACGTGGTTGCCAACCCCTCCGCCACGTGGCAGCATCAGAGCAAGAGGTACTTCGTGGACGTGGACTTCGCCGCTGAGTTCGAGATCGCGCGGCCGTCGAGCCAGTACACGCGGCTGACGCAGACGCTGCCGCGTCACTTCGTCGGCGGCTCCGACGAGCTGAAGAAGATAGTGCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAGAACCGTTACATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAACCCGTTGCCGGAAAATCCGCTCACGAGGACCTCGCCTCTTTTCCCACAGGGCTCTGGCGCCAAATGCCGTTGGGTCGGGTTCGACGACGTCGTTTCGGAGACCAACGTCGTCACCGGCCGCGTCTATATCCGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

310

Amino Acids

34.37

Weight (kDa)

8.15

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 50 - 261 3.7e-71 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 128
AatII GACGTC 2 cut(s) 132, 882
AccB1I GGYRCC 1 cut(s) 848
AccBSI CCGCTC 1 cut(s) 811
AccI GTMKAC 1 cut(s) 240
AccII CGCG 9 cut(s) 199, 269, 362, 587, 589, 610, 631, 689, 912
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 3 cut(s) 76, 590, 907
AcuI CTGAAG 2 cut(s) 76, 680
AcvI CACGTG 1 cut(s) 525
AcyI GRCGYC 3 cut(s) 129, 849, 879
AfaI GTAC 4 cut(s) 158, 548, 605, 776
AfiI CCNNNNNNNGG 3 cut(s) 393, 525, 799
AjiI CACGTC 3 cut(s) 337, 502, 559
AluBI AGCT 6 cut(s) 87, 151, 162, 459, 658, 718
AluI AGCT 6 cut(s) 87, 151, 162, 459, 658, 718
Alw21I GWGCWC 2 cut(s) 153, 461
Alw26I GTCTC 3 cut(s) 136, 253, 884
AlwI GGATC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 5 cut(s) 76, 384, 590, 770, 907
ApeKI GCWGC 6 cut(s) 96, 102, 325, 391, 529, 625
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AspLEI GCGC 4 cut(s) 201, 269, 589, 851
AspS9I GGNCC 4 cut(s) 232, 385, 770, 819
AsuC2I CCSGG 3 cut(s) 80, 236, 481
AsuHPI GGTGA 2 cut(s) 466, 895
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 232, 819
BaeGI GKGCMC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 848
BanII GRGCYC 3 cut(s) 153, 461, 845
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BauI CACGAG 2 cut(s) 152, 814
BbrPI CACGTG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 153, 461
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 6 cut(s) 108, 114, 312, 403, 541, 612
BceAI ACGGC 3 cut(s) 577, 757, 843
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BcnI CCSGG 3 cut(s) 80, 236, 481
BcoDI GTCTC 3 cut(s) 136, 253, 884
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 389
BfoI RGCGCY 1 cut(s) 852
BglI GCCNNNNNGGC 2 cut(s) 75, 733
Bme1390I CCNGG 3 cut(s) 80, 236, 481
Bme18I GGWCC 2 cut(s) 232, 819
BmeT110I CYCGRG 1 cut(s) 167
BmgBI CACGTC 3 cut(s) 337, 502, 559
BmgT120I GGNCC 4 cut(s) 232, 385, 770, 819
BmiI GGNNCC 4 cut(s) 234, 649, 710, 850
BmrFI CCNGG 3 cut(s) 80, 236, 481
BmsI GCATC 2 cut(s) 480, 541
BoxI GACNNNNGTC 1 cut(s) 896
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu10I CCTNAGC 1 cut(s) 704
BpuMI CCSGG 3 cut(s) 80, 236, 481
BsaAI YACGTR 1 cut(s) 525
BsaHI GRCGYC 3 cut(s) 129, 849, 879
BsaI GGTCTC 2 cut(s) 253, 884
BsaJI CCNNGG 2 cut(s) 318, 731
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 525, 799
Bse118I RCCGGY 2 cut(s) 464, 905
Bse1I ACTGG 1 cut(s) 601
BseDI CCNNGG 2 cut(s) 318, 731
BseLI CCNNNNNNNGG 3 cut(s) 393, 525, 799
BseMII CTCAG 3 cut(s) 359, 564, 695
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 3 cut(s) 185, 188, 721
BseSI GKGCMC 1 cut(s) 486
BseX3I CGGCCG 3 cut(s) 76, 590, 907
BseXI GCAGC 6 cut(s) 108, 114, 312, 403, 541, 612
Bsh1236I CGCG 9 cut(s) 199, 269, 362, 587, 589, 610, 631, 689, 912
Bsh1285I CGRYCG 5 cut(s) 79, 240, 273, 593, 910
BshFI GGCC 5 cut(s) 78, 386, 592, 772, 909
BshNI GGYRCC 1 cut(s) 848
BsiEI CGRYCG 5 cut(s) 79, 240, 273, 593, 910
BsiHKAI GWGCWC 2 cut(s) 153, 461
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 7 cut(s) 79, 236, 264, 465, 480, 800, 906
BslI CCNNNNNNNGG 3 cut(s) 393, 525, 799
BsmAI GTCTC 3 cut(s) 136, 253, 884
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 5 cut(s) 78, 386, 592, 772, 909
Bso31I GGTCTC 2 cut(s) 253, 884
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 4 cut(s) 153, 461, 486, 845
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 5 cut(s) 253, 287, 371, 438, 582
BspANI GGCC 5 cut(s) 78, 386, 592, 772, 909
BspCNI CTCAG 3 cut(s) 360, 565, 696
BspFNI CGCG 9 cut(s) 199, 269, 362, 587, 589, 610, 631, 689, 912
BspLI GGNNCC 4 cut(s) 234, 649, 710, 850
BspMAI CTGCAG 1 cut(s) 393
BspPI GGATC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 848
BspTNI GGTCTC 2 cut(s) 253, 884
BsrBI CCGCTC 1 cut(s) 811
BsrFI RCCGGY 2 cut(s) 464, 905
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 2 cut(s) 464, 905
BssECI CCNNGG 2 cut(s) 318, 731
BssMI GATC 5 cut(s) 253, 287, 371, 438, 582
BssNI GRCGYC 3 cut(s) 129, 849, 879
BssSI CACGAG 2 cut(s) 152, 814
BssT1I CCWWGG 1 cut(s) 318
Bst2BI CACGAG 2 cut(s) 152, 814
Bst4CI ACNGT 3 cut(s) 732, 746, 787
BstACI GRCGYC 3 cut(s) 129, 849, 879
BstAPI GCANNNNNTGC 1 cut(s) 625
BstAUI TGTACA 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 4 cut(s) 67, 203, 330, 466
BstDEI CTNAG 4 cut(s) 368, 573, 704, 927
BstDSI CCRYGG 1 cut(s) 731
BstFNI CGCG 9 cut(s) 199, 269, 362, 587, 589, 610, 631, 689, 912
BstH2I RGCGCY 1 cut(s) 852
BstHHI GCGC 4 cut(s) 201, 269, 589, 851
BstKTI GATC 5 cut(s) 256, 290, 374, 441, 585
BstMAI GTCTC 3 cut(s) 136, 253, 884
BstMBI GATC 5 cut(s) 253, 287, 371, 438, 582
BstMCI CGRYCG 5 cut(s) 79, 240, 273, 593, 910
BstNSI RCATGY 1 cut(s) 754
BstPAI GACNNNNGTC 1 cut(s) 896
BstSCI CCNGG 3 cut(s) 78, 234, 479
BstSFI CTRYAG 1 cut(s) 389
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 9 cut(s) 199, 269, 362, 587, 589, 610, 631, 689, 912
BstV1I GCAGC 6 cut(s) 108, 114, 312, 403, 541, 612
BstV2I GAAGAC 1 cut(s) 252
BstZI CGGCCG 3 cut(s) 76, 590, 907
BsuRI GGCC 5 cut(s) 78, 386, 592, 772, 909
BtgI CCRYGG 1 cut(s) 731
BtrI CACGTC 3 cut(s) 337, 502, 559
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 4 cut(s) 67, 203, 330, 466
CaiI CAGNNNCTG 1 cut(s) 625
CfoI GCGC 4 cut(s) 201, 269, 589, 851
Cfr10I RCCGGY 2 cut(s) 464, 905
Cfr13I GGNCC 4 cut(s) 232, 385, 770, 819
CseI GACGC 6 cut(s) 388, 620, 625, 631, 695, 901
Csp6I GTAC 4 cut(s) 157, 547, 604, 775
CviAII CATG 3 cut(s) 403, 679, 751
CviQI GTAC 4 cut(s) 157, 547, 604, 775
DdeI CTNAG 4 cut(s) 368, 573, 704, 927
DinI GGCGCC 1 cut(s) 850
DpnI GATC 5 cut(s) 255, 289, 373, 440, 584
DpnII GATC 5 cut(s) 253, 287, 371, 438, 582
DrdI GACNNNNNNGTC 2 cut(s) 56, 128
DseDI GACNNNNNNGTC 2 cut(s) 56, 128
EaeI YGGCCR 3 cut(s) 76, 590, 907
EagI CGGCCG 3 cut(s) 76, 590, 907
EciI GGCGGA 5 cut(s) 103, 356, 451, 508, 751
Ecl136II GAGCTC 2 cut(s) 151, 459
EclXI CGGCCG 3 cut(s) 76, 590, 907
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 3 cut(s) 153, 461, 845
Eco31I GGTCTC 2 cut(s) 253, 884
Eco47I GGWCC 2 cut(s) 232, 819
Eco52I CGGCCG 3 cut(s) 76, 590, 907
Eco53kI GAGCTC 2 cut(s) 151, 459
Eco57I CTGAAG 2 cut(s) 76, 680
Eco72I CACGTG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 2 cut(s) 151, 459
EcoO109I RGGNCCY 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 3 cut(s) 153, 461, 845
EgeI GGCGCC 1 cut(s) 850
EheI GGCGCC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 3 cut(s) 406, 682, 754
FaiI YATR 4 cut(s) 404, 680, 752, 918
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FatI CATG 3 cut(s) 402, 678, 750
FauI CCCGC 2 cut(s) 51, 666
FblI GTMKAC 1 cut(s) 240
FriOI GRGCYC 3 cut(s) 153, 461, 845
FspBI CTAG 1 cut(s) 47
GlaI GCGC 4 cut(s) 200, 268, 588, 850
HaeII RGCGCY 1 cut(s) 852
HaeIII GGCC 5 cut(s) 78, 386, 592, 772, 909
HapII CCGG 7 cut(s) 79, 236, 264, 465, 480, 800, 906
HgaI GACGC 6 cut(s) 388, 620, 625, 631, 695, 901
HhaI GCGC 4 cut(s) 201, 269, 589, 851
Hin1I GRCGYC 3 cut(s) 129, 849, 879
Hin1II CATG 3 cut(s) 406, 682, 754
Hin6I GCGC 4 cut(s) 199, 267, 587, 849
HinP1I GCGC 4 cut(s) 199, 267, 587, 849
HincII GTYRAC 2 cut(s) 241, 790
HindII GTYRAC 2 cut(s) 241, 790
HinfI GANTC 6 cut(s) 33, 179, 194, 227, 242, 308
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 7 cut(s) 79, 236, 264, 465, 480, 800, 906
HphI GGTGA 2 cut(s) 466, 895
Hpy166II GTNNAC 6 cut(s) 157, 241, 556, 562, 606, 790
Hpy188III TCNNGA 3 cut(s) 167, 580, 814
Hpy8I GTNNAC 6 cut(s) 157, 241, 556, 562, 606, 790
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 3 cut(s) 732, 746, 787
HpyCH4IV ACGT 7 cut(s) 129, 336, 501, 524, 558, 879, 897
HpyCH4V TGCA 4 cut(s) 279, 391, 444, 754
HpyF3I CTNAG 4 cut(s) 368, 573, 704, 927
HpySE526I ACGT 7 cut(s) 129, 336, 501, 524, 558, 879, 897
Hsp92I GRCGYC 3 cut(s) 129, 849, 879
Hsp92II CATG 3 cut(s) 406, 682, 754
HspAI GCGC 4 cut(s) 199, 267, 587, 849
KasI GGCGCC 1 cut(s) 848
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 5 cut(s) 253, 287, 371, 438, 582
LmnI GCTCC 5 cut(s) 396, 456, 464, 653, 708
Lsp1109I GCAGC 6 cut(s) 108, 114, 312, 403, 541, 612
LweI GCATC 2 cut(s) 480, 541
MaeI CTAG 1 cut(s) 47
MaeII ACGT 7 cut(s) 129, 336, 501, 524, 558, 879, 897
MaeIII GTNAC 5 cut(s) 34, 425, 632, 746, 901
MalI GATC 5 cut(s) 255, 289, 373, 440, 584
MbiI CCGCTC 1 cut(s) 811
MboI GATC 5 cut(s) 253, 287, 371, 438, 582
MboII GAAGA 5 cut(s) 252, 673, 676, 706, 751
MhlI GDGCHC 4 cut(s) 153, 461, 486, 845
Mly113I GGCGCC 1 cut(s) 849
MlyI GAGTC 5 cut(s) 42, 203, 221, 236, 302
MmeI TCCRAC 2 cut(s) 171, 675
MreI CGCCGGCG 1 cut(s) 464
MroNI GCCGGC 1 cut(s) 464
MseI TTAA 1 cut(s) 789
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 3 cut(s) 99, 394, 572
MspI CCGG 7 cut(s) 79, 236, 264, 465, 480, 800, 906
MspR9I CCNGG 3 cut(s) 80, 236, 481
MvnI CGCG 9 cut(s) 199, 269, 362, 587, 589, 610, 631, 689, 912
NaeI GCCGGC 1 cut(s) 466
NarI GGCGCC 1 cut(s) 849
NciI CCSGG 3 cut(s) 80, 236, 481
NdeII GATC 5 cut(s) 253, 287, 371, 438, 582
NgoMIV GCCGGC 1 cut(s) 464
NlaIII CATG 3 cut(s) 406, 682, 754
NlaIV GGNNCC 4 cut(s) 234, 649, 710, 850
NmeAIII GCCGAG 1 cut(s) 737
NmuCI GTSAC 4 cut(s) 34, 425, 632, 901
NspI RCATGY 1 cut(s) 754
PaeR7I CTCGAG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 7 cut(s) 222, 296, 495, 648, 791, 873, 879
PdiI GCCGGC 1 cut(s) 466
PfeI GAWTC 1 cut(s) 179
PflFI GACNNNGTC 5 cut(s) 56, 128, 236, 245, 878
PleI GAGTC 5 cut(s) 41, 202, 221, 236, 302
PluTI GGCGCC 1 cut(s) 852
PmaCI CACGTG 1 cut(s) 525
PmlI CACGTG 1 cut(s) 525
PpsI GAGTC 5 cut(s) 41, 202, 221, 236, 302
Ppu21I YACGTR 1 cut(s) 525
PpuMI RGGWCCY 1 cut(s) 819
PshAI GACNNNNGTC 1 cut(s) 896
Psp124BI GAGCTC 2 cut(s) 153, 461
Psp5II RGGWCCY 1 cut(s) 819
PspCI CACGTG 1 cut(s) 525
PspN4I GGNNCC 4 cut(s) 234, 649, 710, 850
PspPI GGNCC 4 cut(s) 232, 385, 770, 819
PspPPI RGGWCCY 1 cut(s) 819
PstI CTGCAG 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 625
PsyI GACNNNGTC 5 cut(s) 56, 128, 236, 245, 878
RsaI GTAC 4 cut(s) 158, 548, 605, 776
RsaNI GTAC 4 cut(s) 157, 547, 604, 775
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 2 cut(s) 153, 461
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 789
Sau3AI GATC 5 cut(s) 253, 287, 371, 438, 582
Sau96I GGNCC 4 cut(s) 232, 385, 770, 819
SchI GAGTC 5 cut(s) 42, 203, 221, 236, 302
ScrFI CCNGG 3 cut(s) 80, 236, 481
SduI GDGCHC 4 cut(s) 153, 461, 486, 845
SfaNI GCATC 2 cut(s) 480, 541
SfcI CTRYAG 1 cut(s) 389
SfoI GGCGCC 1 cut(s) 850
Sfr274I CTCGAG 1 cut(s) 167
SgrAI CRCCGGYG 1 cut(s) 464
SinI GGWCC 2 cut(s) 232, 819
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SspDI GGCGCC 1 cut(s) 848
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 2 cut(s) 153, 461
StyD4I CCNGG 3 cut(s) 78, 234, 479
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 732, 746, 787
TaiI ACGT 7 cut(s) 132, 339, 504, 527, 561, 882, 900
TaqI TCGA 7 cut(s) 168, 240, 273, 498, 579, 596, 873
TaqII GACCGA 2 cut(s) 235, 246
TatI WGTACW 2 cut(s) 156, 603
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 4 cut(s) 34, 425, 632, 901
TseI GCWGC 6 cut(s) 96, 102, 325, 391, 529, 625
Tsp45I GTSAC 4 cut(s) 34, 425, 632, 901
TspDTI ATGAA 1 cut(s) 484
TspRI CASTG 1 cut(s) 729
Tth111I GACNNNGTC 5 cut(s) 56, 128, 236, 245, 878
VpaK11BI GGWCC 2 cut(s) 232, 819
XceI RCATGY 1 cut(s) 754
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 47
ZraI GACGTC 2 cut(s) 130, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.