Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471259.1

Orthogroup ID

OG0010118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1327 .. 2019

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

gtcgactcggtctccgatcgttccggcgcggtggagtgcattttgagatattcggcgaatgcggacgcctacgccaaggtgctgctcgctgacgtggcggaggcggtggaggcgttctcgtgtctgagatcggacaagtcggccctgcagaggagcgtcatgtcgtttctgagggggaaggggcacaatgcggcgatctgcaagaccaagtggagctccgccggcagcatcaccgccgggcactacgaattcatcgacgtggtagccgccaactcgtccgccacgtggcggcagcagcagagcagcaggtacttcgtggacgtggacttcgccgccgagttcgagatcgcgcggccgtcgggccagtactcgcggctgtcgcagtcgctgccacgtcacttcgtcggcggctccgacgacctgaaaaagatcgtccgggtcatgtgcgacgcggcgaagaagtcgctgaggagccgagagctgtcagtgccaccgtggcggaaaaaccgttacatgcagaacaagtggttcgggccgtacaagcggacggttaatccgttgccggagaatccgctcacgcggacctcgcctctattcccacaggtgtctggcgccaaatgccgttgggtcgggttcgacgacgtcgtttctgagacctgcgccgtcaccggccgcgtctttatccgtacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDDEXK_6

Protein Analysis

230

Amino Acids

25.59

Weight (kDa)

9.55

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07350
fragaria_vesca	FvH4_2g18090
malus_domestica	MD00G1206900.v1.1 MD05G1165600.v1.1 MD07G1000200.v1.1 MD07G1287900.v1.1 MD10G1156000.v1.1
prunus_persica	Prupe.8G193800_v2.0.a1
pyrus_communis	pycom05g15430 pycom10g13420
rosa_chinensis	RchiOBHm_Chr6g0283481
rosa_laevigata	RLG00000012822
rosa_multiflora	Rmu_co8471259.1_g000001 Rmu_sc0004959.1_g000011
rosa_roxburghii	Rroxscaffold_7G00185490
rosa_rugosa	Rorug06G0154600
rosa_samantha	Rh6AG267000 Rh6BG269600 Rh6CG269400 Rh6DG262800
rosa_wichuraiana	Rw6G023110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	645
Acc36I	ACCTGC	2 cut(s)	297, 665
AccB1I	GGYRCC	1 cut(s)	611
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	3
AccII	CGCG	7 cut(s)	29, 350, 352, 373, 452, 580, 675
AcoI	YGGCCR	2 cut(s)	353, 670
AcsI	RAATTY	1 cut(s)	248
AcvI	CACGTG	1 cut(s)	285
AcyI	GRCGYC	3 cut(s)	66, 612, 642
AfaI	GTAC	4 cut(s)	311, 368, 539, 688
AfiI	CCNNNNNNNGG	3 cut(s)	150, 285, 288
AjiI	CACGTC	4 cut(s)	94, 259, 322, 395
AluBI	AGCT	2 cut(s)	216, 481
AluI	AGCT	2 cut(s)	216, 481
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	16, 647
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	5 cut(s)	141, 353, 361, 533, 670
ApeKI	GCWGC	6 cut(s)	82, 225, 292, 295, 303, 388
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	4 cut(s)	29, 352, 614, 662
AspS9I	GGNCC	4 cut(s)	142, 361, 533, 582
AsuC2I	CCSGG	2 cut(s)	238, 437
AsuHPI	GGTGA	2 cut(s)	223, 658
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	2 cut(s)	186, 243
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	118
BbrPI	CACGTG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	6 cut(s)	69, 237, 304, 307, 315, 375
BceAI	ACGGC	4 cut(s)	340, 520, 606, 647
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BcnI	CCSGG	2 cut(s)	238, 437
BcoDI	GTCTC	2 cut(s)	16, 647
BfmI	CTRYAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	615
BfuAI	ACCTGC	2 cut(s)	297, 665
BglI	GCCNNNNNGGC	1 cut(s)	496
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	238, 437
Bme18I	GGWCC	1 cut(s)	582
BmgBI	CACGTC	4 cut(s)	94, 259, 322, 395
BmgT120I	GGNCC	4 cut(s)	142, 361, 533, 582
BmiI	GGNNCC	3 cut(s)	412, 473, 613
BmrFI	CCNGG	2 cut(s)	238, 437
BmsI	GCATC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu10I	CCTNAGC	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	238, 437
BsaAI	YACGTR	1 cut(s)	285
BsaHI	GRCGYC	3 cut(s)	66, 612, 642
BsaI	GGTCTC	2 cut(s)	16, 647
BsaJI	CCNNGG	2 cut(s)	75, 494
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 285, 288
Bse118I	RCCGGY	2 cut(s)	221, 668
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	75, 494
BseLI	CCNNNNNNNGG	3 cut(s)	150, 285, 288
BseMII	CTCAG	4 cut(s)	116, 161, 458, 642
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	166, 484
BseSI	GKGCMC	2 cut(s)	186, 243
BseX3I	CGGCCG	2 cut(s)	353, 670
BseXI	GCAGC	6 cut(s)	69, 237, 304, 307, 315, 375
Bsh1236I	CGCG	7 cut(s)	29, 350, 352, 373, 452, 580, 675
Bsh1285I	CGRYCG	3 cut(s)	19, 356, 673
BshFI	GGCC	5 cut(s)	143, 355, 363, 535, 672
BshNI	GGYRCC	1 cut(s)	611
BsiEI	CGRYCG	3 cut(s)	19, 356, 673
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	6 cut(s)	24, 222, 237, 436, 563, 669
BslI	CCNNNNNNNGG	3 cut(s)	150, 285, 288
BsmAI	GTCTC	2 cut(s)	16, 647
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	143, 355, 363, 535, 672
Bso31I	GGTCTC	2 cut(s)	16, 647
Bsp1286I	GDGCHC	3 cut(s)	186, 218, 243
Bsp143I	GATC	5 cut(s)	16, 128, 195, 345, 429
BspANI	GGCC	5 cut(s)	143, 355, 363, 535, 672
BspCNI	CTCAG	4 cut(s)	117, 162, 459, 643
BspFNI	CGCG	7 cut(s)	29, 350, 352, 373, 452, 580, 675
BspLI	GGNNCC	3 cut(s)	412, 473, 613
BspMAI	CTGCAG	1 cut(s)	150
BspMI	ACCTGC	2 cut(s)	297, 665
BspT107I	GGYRCC	1 cut(s)	611
BspTNI	GGTCTC	2 cut(s)	16, 647
BsrBI	CCGCTC	1 cut(s)	574
BsrFI	RCCGGY	2 cut(s)	221, 668
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	2 cut(s)	221, 668
BssECI	CCNNGG	2 cut(s)	75, 494
BssMI	GATC	5 cut(s)	16, 128, 195, 345, 429
BssNI	GRCGYC	3 cut(s)	66, 612, 642
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	495, 509, 550
BstACI	GRCGYC	3 cut(s)	66, 612, 642
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	87, 223
BstDEI	CTNAG	5 cut(s)	125, 170, 467, 651, 690
BstDSI	CCRYGG	1 cut(s)	494
BstFNI	CGCG	7 cut(s)	29, 350, 352, 373, 452, 580, 675
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	4 cut(s)	29, 352, 614, 662
BstKTI	GATC	5 cut(s)	19, 131, 198, 348, 432
BstMAI	GTCTC	2 cut(s)	16, 647
BstMBI	GATC	5 cut(s)	16, 128, 195, 345, 429
BstMCI	CGRYCG	3 cut(s)	19, 356, 673
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	236, 435
BstSFI	CTRYAG	1 cut(s)	146
BstSLI	GKGCMC	2 cut(s)	186, 243
BstUI	CGCG	7 cut(s)	29, 350, 352, 373, 452, 580, 675
BstV1I	GCAGC	6 cut(s)	69, 237, 304, 307, 315, 375
BstZI	CGGCCG	2 cut(s)	353, 670
BsuRI	GGCC	5 cut(s)	143, 355, 363, 535, 672
BtgI	CCRYGG	1 cut(s)	494
BtrI	CACGTC	4 cut(s)	94, 259, 322, 395
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	2 cut(s)	297, 665
Cac8I	GCNNGC	2 cut(s)	87, 223
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	4 cut(s)	29, 352, 614, 662
Cfr10I	RCCGGY	2 cut(s)	221, 668
Cfr13I	GGNCC	4 cut(s)	142, 361, 533, 582
CseI	GACGC	4 cut(s)	74, 145, 458, 664
Csp6I	GTAC	4 cut(s)	310, 367, 538, 687
CviAII	CATG	3 cut(s)	160, 442, 514
CviQI	GTAC	4 cut(s)	310, 367, 538, 687
DdeI	CTNAG	5 cut(s)	125, 170, 467, 651, 690
DinI	GGCGCC	1 cut(s)	613
DpnI	GATC	5 cut(s)	18, 130, 197, 347, 431
DpnII	GATC	5 cut(s)	16, 128, 195, 345, 429
EaeI	YGGCCR	2 cut(s)	353, 670
EagI	CGGCCG	2 cut(s)	353, 670
EciI	GGCGGA	4 cut(s)	113, 208, 268, 514
Ecl136II	GAGCTC	1 cut(s)	216
EclXI	CGGCCG	2 cut(s)	353, 670
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	2 cut(s)	16, 647
Eco47I	GGWCC	1 cut(s)	582
Eco52I	CGGCCG	2 cut(s)	353, 670
Eco53kI	GAGCTC	1 cut(s)	216
Eco72I	CACGTG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	613
EheI	GGCGCC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	163, 445, 517
FaiI	YATR	3 cut(s)	161, 443, 515
FatI	CATG	3 cut(s)	159, 441, 513
FblI	GTMKAC	1 cut(s)	3
FriOI	GRGCYC	1 cut(s)	218
GlaI	GCGC	4 cut(s)	28, 351, 613, 661
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	143, 355, 363, 535, 672
HapII	CCGG	6 cut(s)	24, 222, 237, 436, 563, 669
HgaI	GACGC	4 cut(s)	74, 145, 458, 664
HhaI	GCGC	4 cut(s)	29, 352, 614, 662
Hin1I	GRCGYC	3 cut(s)	66, 612, 642
Hin1II	CATG	3 cut(s)	163, 445, 517
Hin6I	GCGC	4 cut(s)	27, 350, 612, 660
HinP1I	GCGC	4 cut(s)	27, 350, 612, 660
HincII	GTYRAC	1 cut(s)	4
HindII	GTYRAC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	5, 568
HpaII	CCGG	6 cut(s)	24, 222, 237, 436, 563, 669
HphI	GGTGA	2 cut(s)	223, 658
Hpy166II	GTNNAC	3 cut(s)	4, 319, 325
Hpy188I	TCNGA	6 cut(s)	16, 126, 133, 171, 415, 652
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	4, 319, 325
Hpy99I	CGWCG	8 cut(s)	260, 361, 407, 419, 452, 641, 644, 647
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	3 cut(s)	495, 509, 550
HpyCH4IV	ACGT	6 cut(s)	93, 258, 284, 321, 394, 642
HpyCH4V	TGCA	4 cut(s)	39, 148, 201, 517
HpyF3I	CTNAG	5 cut(s)	125, 170, 467, 651, 690
HpySE526I	ACGT	6 cut(s)	93, 258, 284, 321, 394, 642
Hsp92I	GRCGYC	3 cut(s)	66, 612, 642
Hsp92II	CATG	3 cut(s)	163, 445, 517
HspAI	GCGC	4 cut(s)	27, 350, 612, 660
KasI	GGCGCC	1 cut(s)	611
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	16, 128, 195, 345, 429
LmnI	GCTCC	5 cut(s)	153, 213, 221, 416, 471
Lsp1109I	GCAGC	6 cut(s)	69, 237, 304, 307, 315, 375
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	6 cut(s)	93, 258, 284, 321, 394, 642
MaeIII	GTNAC	3 cut(s)	395, 509, 664
MalI	GATC	5 cut(s)	18, 130, 197, 347, 431
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	5 cut(s)	16, 128, 195, 345, 429
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	186, 218, 243
MluCI	AATT	1 cut(s)	248
Mly113I	GGCGCC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	7 cut(s)	94, 103, 144, 165, 462, 595, 600
MroNI	GCCGGC	1 cut(s)	221
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	6 cut(s)	24, 222, 237, 436, 563, 669
MspR9I	CCNGG	2 cut(s)	238, 437
Mva1269I	GAATGC	1 cut(s)	64
MvnI	CGCG	7 cut(s)	29, 350, 352, 373, 452, 580, 675
NaeI	GCCGGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	612
NciI	CCSGG	2 cut(s)	238, 437
NdeII	GATC	5 cut(s)	16, 128, 195, 345, 429
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	3 cut(s)	163, 445, 517
NlaIV	GGNNCC	3 cut(s)	412, 473, 613
NmeAIII	GCCGAG	2 cut(s)	361, 500
NmuCI	GTSAC	2 cut(s)	395, 664
NspI	RCATGY	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	6 cut(s)	252, 281, 411, 554, 636, 642
PctI	GAATGC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	568
PflFI	GACNNNGTC	2 cut(s)	8, 641
Ple19I	CGATCG	1 cut(s)	19
PluTI	GGCGCC	1 cut(s)	615
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	218
PspCI	CACGTG	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	412, 473, 613
PspPI	GGNCC	4 cut(s)	142, 361, 533, 582
PstI	CTGCAG	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	388
PsyI	GACNNNGTC	2 cut(s)	8, 641
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	4 cut(s)	311, 368, 539, 688
RsaNI	GTAC	4 cut(s)	310, 367, 538, 687
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	5 cut(s)	16, 128, 195, 345, 429
Sau96I	GGNCC	4 cut(s)	142, 361, 533, 582
ScaI	AGTACT	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	238, 437
SduI	GDGCHC	3 cut(s)	186, 218, 243
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	146
SfoI	GGCGCC	1 cut(s)	613
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	248
SspDI	GGCGCC	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	236, 435
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	495, 509, 550
TaiI	ACGT	6 cut(s)	96, 261, 287, 324, 397, 645
TaqI	TCGA	4 cut(s)	3, 255, 342, 636
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	9 cut(s)	194, 269, 292, 335, 355, 376, 411, 455, 675
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	2 cut(s)	395, 664
TseI	GCWGC	6 cut(s)	82, 225, 292, 295, 303, 388
Tsp45I	GTSAC	2 cut(s)	395, 664
TspDTI	ATGAA	1 cut(s)	241
TspGWI	ACGGA	2 cut(s)	546, 674
TspRI	CASTG	1 cut(s)	492
Tth111I	GACNNNGTC	2 cut(s)	8, 641
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	3
ZraI	GACGTC	1 cut(s)	643
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.