RchiOBHm_Chr6g0283481

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010118
Physical Location & Seq
Reverse (-)
46688856 .. 46690443
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25418

Sequence Viewer

Length: 945 bp
ATGGCTGGTCTCGTCAGAACCAGAACCAAGAGAGTCACTTACCCGCTCGACGACAAGGTCAAGGCACGACTCGTCGGCCGGGAGAGCTACGTCAGCAGCGGCAGCGAGCACTCCGGCGGCGACGTCTCTCCTTGTCTGTCCGAGCTCGTTCACAGCTTTCTCGAGGAGGAGGAGGAGGAGGAGGAAGAATCGTCGACCTCGTCGTCGGAGCCGCGGTCGCCGGACAACCGCGACTACGACTCGGACCGAGTCGACTCGGTCTCCGATCGTTCCGGCGCGGTGGAGTGCATTTTGAGATATTCGGCGAATGCGGACGCCTACGCCAAGGTGCTGCTCGCTGACATGGCGGAGGCGGTGGAGGCGTTCTCGTGTCTGAGATCGGACAAGTCGGCCCTACAGAGGAGCGTCATGTCGTTTCTGAGGGGGAAGGGGCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCAGCATCACCGCCGGGCACTACGAATTCATCGACGTGGTAGCCGCCAACTCGTCCGCCACGTGGCGGCAGCAGCAGCAGAGCAGCAGGTACTTCGTGGACGTGGACTTCGCCGCCGAGTTCGAGATCGCGCGGCCGTCGGGCCAGTACTCGCGGCTGTCGCAGTCGCTGCCACGTCACTTCGTCGGCGGCTCCGACGACCTGAAAAAGATCGTCCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAAAACCGTTACATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAATCCGTTACCGGAGAATCCGCTCACGCGGACCTCGCCTCTGTTCCCACAGGTGTCTGGCGCCAAATGCCGTTGGGTCGGGTTCGACGACGTCGTTTCTGAGACCAGCGCCGTCACCGGCCGCGTCTATATCCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

314

Amino Acids

35.02

Weight (kDa)

8.14

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 266 1.1e-69 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 202
AatII GACGTC 2 cut(s) 126, 897
Acc36I ACCTGC 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 863
AccBSI CCGCTC 2 cut(s) 46, 826
AccI GTMKAC 2 cut(s) 194, 252
AccII CGCG 9 cut(s) 214, 231, 278, 602, 604, 625, 704, 832, 927
AcoI YGGCCR 3 cut(s) 76, 605, 922
AcsI RAATTY 1 cut(s) 497
AcvI CACGTG 1 cut(s) 534
AcyI GRCGYC 4 cut(s) 123, 315, 864, 894
AfaI GTAC 4 cut(s) 563, 620, 791, 940
AfiI CCNNNNNNNGG 3 cut(s) 399, 534, 537
AjiI CACGTC 3 cut(s) 508, 574, 647
AluBI AGCT 5 cut(s) 87, 145, 156, 465, 733
AluI AGCT 5 cut(s) 87, 145, 156, 465, 733
Alw21I GWGCWC 3 cut(s) 111, 147, 467
Alw26I GTCTC 4 cut(s) 14, 130, 265, 899
AlwNI CAGNNNCTG 1 cut(s) 640
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 6 cut(s) 76, 390, 605, 613, 785, 922
ApeKI GCWGC 9 cut(s) 96, 102, 331, 474, 541, 544, 547, 555, 640
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AspLEI GCGC 4 cut(s) 278, 604, 866, 914
AspS9I GGNCC 5 cut(s) 244, 391, 613, 785, 834
AsuC2I CCSGG 3 cut(s) 80, 487, 689
AsuHPI GGTGA 2 cut(s) 472, 910
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 244, 834
BaeGI GKGCMC 2 cut(s) 435, 492
BanI GGYRCC 1 cut(s) 863
BanII GRGCYC 2 cut(s) 147, 467
BauI CACGAG 1 cut(s) 367
BbrPI CACGTG 1 cut(s) 534
Bbv12I GWGCWC 3 cut(s) 111, 147, 467
BbvCI CCTCAGC 1 cut(s) 719
BbvI GCAGC 9 cut(s) 108, 114, 318, 486, 553, 556, 559, 567, 627
BceAI ACGGC 4 cut(s) 592, 772, 858, 899
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BcnI CCSGG 3 cut(s) 80, 487, 689
BcoDI GTCTC 4 cut(s) 14, 130, 265, 899
BfmI CTRYAG 1 cut(s) 395
BfoI RGCGCY 2 cut(s) 867, 915
BfuAI ACCTGC 1 cut(s) 549
BglI GCCNNNNNGGC 1 cut(s) 748
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 3 cut(s) 80, 487, 689
Bme18I GGWCC 2 cut(s) 244, 834
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 3 cut(s) 508, 574, 647
BmgT120I GGNCC 5 cut(s) 244, 391, 613, 785, 834
BmiI GGNNCC 4 cut(s) 210, 664, 725, 865
BmrFI CCNGG 3 cut(s) 80, 487, 689
BmsI GCATC 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu10I CCTNAGC 1 cut(s) 719
BpuMI CCSGG 3 cut(s) 80, 487, 689
BsaAI YACGTR 1 cut(s) 534
BsaHI GRCGYC 4 cut(s) 123, 315, 864, 894
BsaI GGTCTC 3 cut(s) 14, 265, 899
BsaJI CCNNGG 3 cut(s) 212, 324, 746
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 245, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 534, 537
Bse118I RCCGGY 2 cut(s) 470, 920
Bse1I ACTGG 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 212, 324, 746
BseLI CCNNNNNNNGG 3 cut(s) 399, 534, 537
BseMII CTCAG 4 cut(s) 365, 410, 710, 894
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 8 cut(s) 179, 182, 185, 188, 191, 194, 415, 736
BseSI GKGCMC 2 cut(s) 435, 492
BseX3I CGGCCG 3 cut(s) 76, 605, 922
BseXI GCAGC 9 cut(s) 108, 114, 318, 486, 553, 556, 559, 567, 627
Bsh1236I CGCG 9 cut(s) 214, 231, 278, 602, 604, 625, 704, 832, 927
Bsh1285I CGRYCG 5 cut(s) 79, 218, 268, 608, 925
BshFI GGCC 6 cut(s) 78, 392, 607, 615, 787, 924
BshNI GGYRCC 1 cut(s) 863
BsiEI CGRYCG 5 cut(s) 79, 218, 268, 608, 925
BsiHKAI GWGCWC 3 cut(s) 111, 147, 467
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 9 cut(s) 79, 114, 221, 273, 471, 486, 688, 815, 921
BslI CCNNNNNNNGG 3 cut(s) 399, 534, 537
BsmAI GTCTC 4 cut(s) 14, 130, 265, 899
BsmBI CGTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 6 cut(s) 78, 392, 607, 615, 787, 924
Bso31I GGTCTC 3 cut(s) 14, 265, 899
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 111, 147, 435, 467, 492
Bsp143I GATC 5 cut(s) 265, 377, 444, 597, 681
BspANI GGCC 6 cut(s) 78, 392, 607, 615, 787, 924
BspCNI CTCAG 4 cut(s) 366, 411, 711, 895
BspFNI CGCG 9 cut(s) 214, 231, 278, 602, 604, 625, 704, 832, 927
BspLI GGNNCC 4 cut(s) 210, 664, 725, 865
BspMI ACCTGC 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 863
BspTNI GGTCTC 3 cut(s) 14, 265, 899
BsrBI CCGCTC 2 cut(s) 46, 826
BsrFI RCCGGY 2 cut(s) 470, 920
BsrI ACTGG 1 cut(s) 616
BssAI RCCGGY 2 cut(s) 470, 920
BssECI CCNNGG 3 cut(s) 212, 324, 746
BssMI GATC 5 cut(s) 265, 377, 444, 597, 681
BssNI GRCGYC 4 cut(s) 123, 315, 864, 894
BssSI CACGAG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 367
Bst4CI ACNGT 3 cut(s) 747, 761, 802
BstACI GRCGYC 4 cut(s) 123, 315, 864, 894
BstAPI GCANNNNNTGC 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 534
BstC8I GCNNGC 3 cut(s) 107, 336, 472
BstDEI CTNAG 5 cut(s) 374, 419, 719, 903, 942
BstDSI CCRYGG 2 cut(s) 212, 746
BstFNI CGCG 9 cut(s) 214, 231, 278, 602, 604, 625, 704, 832, 927
BstH2I RGCGCY 2 cut(s) 867, 915
BstHHI GCGC 4 cut(s) 278, 604, 866, 914
BstKTI GATC 5 cut(s) 268, 380, 447, 600, 684
BstMAI GTCTC 4 cut(s) 14, 130, 265, 899
BstMBI GATC 5 cut(s) 265, 377, 444, 597, 681
BstMCI CGRYCG 5 cut(s) 79, 218, 268, 608, 925
BstNSI RCATGY 1 cut(s) 769
BstSCI CCNGG 3 cut(s) 78, 485, 687
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 2 cut(s) 435, 492
BstUI CGCG 9 cut(s) 214, 231, 278, 602, 604, 625, 704, 832, 927
BstV1I GCAGC 9 cut(s) 108, 114, 318, 486, 553, 556, 559, 567, 627
BstZI CGGCCG 3 cut(s) 76, 605, 922
BsuRI GGCC 6 cut(s) 78, 392, 607, 615, 787, 924
BtgI CCRYGG 2 cut(s) 212, 746
BtrI CACGTC 3 cut(s) 508, 574, 647
BtsIMutI CAGTG 1 cut(s) 744
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 3 cut(s) 107, 336, 472
CaiI CAGNNNCTG 1 cut(s) 640
CfoI GCGC 4 cut(s) 278, 604, 866, 914
Cfr10I RCCGGY 2 cut(s) 470, 920
Cfr13I GGNCC 5 cut(s) 244, 391, 613, 785, 834
Cfr42I CCGCGG 1 cut(s) 215
CpoI CGGWCCG 1 cut(s) 244
CseI GACGC 4 cut(s) 323, 394, 710, 916
Csp6I GTAC 4 cut(s) 562, 619, 790, 939
CspI CGGWCCG 1 cut(s) 244
CviAII CATG 4 cut(s) 343, 409, 694, 766
CviQI GTAC 4 cut(s) 562, 619, 790, 939
DdeI CTNAG 5 cut(s) 374, 419, 719, 903, 942
DinI GGCGCC 1 cut(s) 865
DpnI GATC 5 cut(s) 267, 379, 446, 599, 683
DpnII GATC 5 cut(s) 265, 377, 444, 597, 681
DrdI GACNNNNNNGTC 2 cut(s) 56, 202
DseDI GACNNNNNNGTC 2 cut(s) 56, 202
EaeI YGGCCR 3 cut(s) 76, 605, 922
EagI CGGCCG 3 cut(s) 76, 605, 922
EciI GGCGGA 4 cut(s) 362, 457, 517, 766
Ecl136II GAGCTC 2 cut(s) 145, 465
EclXI CGGCCG 3 cut(s) 76, 605, 922
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 147, 467
Eco31I GGTCTC 3 cut(s) 14, 265, 899
Eco47I GGWCC 2 cut(s) 244, 834
Eco52I CGGCCG 3 cut(s) 76, 605, 922
Eco53kI GAGCTC 2 cut(s) 145, 465
Eco72I CACGTG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 2 cut(s) 145, 465
EcoRI GAATTC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 147, 467
EgeI GGCGCC 1 cut(s) 865
EheI GGCGCC 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 4 cut(s) 346, 412, 697, 769
FaiI YATR 5 cut(s) 344, 410, 695, 767, 933
FatI CATG 4 cut(s) 342, 408, 693, 765
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 2 cut(s) 194, 252
FriOI GRGCYC 2 cut(s) 147, 467
GlaI GCGC 4 cut(s) 277, 603, 865, 913
HaeII RGCGCY 2 cut(s) 867, 915
HaeIII GGCC 6 cut(s) 78, 392, 607, 615, 787, 924
HapII CCGG 9 cut(s) 79, 114, 221, 273, 471, 486, 688, 815, 921
HgaI GACGC 4 cut(s) 323, 394, 710, 916
HhaI GCGC 4 cut(s) 278, 604, 866, 914
Hin1I GRCGYC 4 cut(s) 123, 315, 864, 894
Hin1II CATG 4 cut(s) 346, 412, 697, 769
Hin6I GCGC 4 cut(s) 276, 602, 864, 912
HinP1I GCGC 4 cut(s) 276, 602, 864, 912
HincII GTYRAC 2 cut(s) 195, 253
HindII GTYRAC 2 cut(s) 195, 253
HinfI GANTC 7 cut(s) 33, 69, 188, 239, 249, 254, 820
HpaII CCGG 9 cut(s) 79, 114, 221, 273, 471, 486, 688, 815, 921
HphI GGTGA 2 cut(s) 472, 910
Hpy166II GTNNAC 5 cut(s) 151, 195, 253, 571, 577
Hpy188III TCNNGA 2 cut(s) 161, 595
Hpy8I GTNNAC 5 cut(s) 151, 195, 253, 571, 577
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 3 cut(s) 747, 761, 802
HpyCH4IV ACGT 7 cut(s) 90, 123, 507, 533, 573, 646, 894
HpyCH4V TGCA 3 cut(s) 288, 450, 769
HpyF3I CTNAG 5 cut(s) 374, 419, 719, 903, 942
HpySE526I ACGT 7 cut(s) 90, 123, 507, 533, 573, 646, 894
Hsp92I GRCGYC 4 cut(s) 123, 315, 864, 894
Hsp92II CATG 4 cut(s) 346, 412, 697, 769
HspAI GCGC 4 cut(s) 276, 602, 864, 912
KasI GGCGCC 1 cut(s) 863
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
KspI CCGCGG 1 cut(s) 215
Kzo9I GATC 5 cut(s) 265, 377, 444, 597, 681
LmnI GCTCC 6 cut(s) 208, 402, 462, 470, 668, 723
Lsp1109I GCAGC 9 cut(s) 108, 114, 318, 486, 553, 556, 559, 567, 627
LweI GCATC 1 cut(s) 486
MaeII ACGT 7 cut(s) 90, 123, 507, 533, 573, 646, 894
MaeIII GTNAC 5 cut(s) 34, 647, 761, 810, 916
MalI GATC 5 cut(s) 267, 379, 446, 599, 683
MbiI CCGCTC 2 cut(s) 46, 826
MboI GATC 5 cut(s) 265, 377, 444, 597, 681
MboII GAAGA 2 cut(s) 197, 721
MhlI GDGCHC 5 cut(s) 111, 147, 435, 467, 492
MluCI AATT 1 cut(s) 497
Mly113I GGCGCC 1 cut(s) 864
MlyI GAGTC 5 cut(s) 42, 63, 233, 248, 258
MmeI TCCRAC 2 cut(s) 186, 690
MroNI GCCGGC 1 cut(s) 470
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 2 cut(s) 99, 214
MspI CCGG 9 cut(s) 79, 114, 221, 273, 471, 486, 688, 815, 921
MspR9I CCNGG 3 cut(s) 80, 487, 689
Mva1269I GAATGC 1 cut(s) 313
MvnI CGCG 9 cut(s) 214, 231, 278, 602, 604, 625, 704, 832, 927
NaeI GCCGGC 1 cut(s) 472
NarI GGCGCC 1 cut(s) 864
NciI CCSGG 3 cut(s) 80, 487, 689
NdeII GATC 5 cut(s) 265, 377, 444, 597, 681
NgoMIV GCCGGC 1 cut(s) 470
NlaIII CATG 4 cut(s) 346, 412, 697, 769
NlaIV GGNNCC 4 cut(s) 210, 664, 725, 865
NmeAIII GCCGAG 2 cut(s) 613, 752
NmuCI GTSAC 3 cut(s) 34, 647, 916
NspI RCATGY 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 8 cut(s) 197, 200, 501, 530, 663, 806, 888, 894
PctI GAATGC 1 cut(s) 313
PdiI GCCGGC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 188, 820
PflFI GACNNNGTC 5 cut(s) 56, 199, 248, 257, 893
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 5 cut(s) 41, 63, 233, 248, 257
PluTI GGCGCC 1 cut(s) 867
PmaCI CACGTG 1 cut(s) 534
PmlI CACGTG 1 cut(s) 534
PpsI GAGTC 5 cut(s) 41, 63, 233, 248, 257
Ppu21I YACGTR 1 cut(s) 534
Psp124BI GAGCTC 2 cut(s) 147, 467
PspCI CACGTG 1 cut(s) 534
PspN4I GGNNCC 4 cut(s) 210, 664, 725, 865
PspPI GGNCC 5 cut(s) 244, 391, 613, 785, 834
PstNI CAGNNNCTG 1 cut(s) 640
PsyI GACNNNGTC 5 cut(s) 56, 199, 248, 257, 893
PvuI CGATCG 1 cut(s) 268
RsaI GTAC 4 cut(s) 563, 620, 791, 940
RsaNI GTAC 4 cut(s) 562, 619, 790, 939
RseI CAYNNNNRTG 1 cut(s) 506
Rsr2I CGGWCCG 1 cut(s) 244
RsrII CGGWCCG 1 cut(s) 244
SacI GAGCTC 2 cut(s) 147, 467
SacII CCGCGG 1 cut(s) 215
SalI GTCGAC 2 cut(s) 193, 251
SaqAI TTAA 1 cut(s) 804
Sau3AI GATC 5 cut(s) 265, 377, 444, 597, 681
Sau96I GGNCC 5 cut(s) 244, 391, 613, 785, 834
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 5 cut(s) 42, 63, 233, 248, 258
ScrFI CCNGG 3 cut(s) 80, 487, 689
SduI GDGCHC 5 cut(s) 111, 147, 435, 467, 492
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 395
SfoI GGCGCC 1 cut(s) 865
Sfr274I CTCGAG 1 cut(s) 161
Sfr303I CCGCGG 1 cut(s) 215
SgrBI CCGCGG 1 cut(s) 215
SinI GGWCC 2 cut(s) 244, 834
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 497
SspDI GGCGCC 1 cut(s) 863
SstI GAGCTC 2 cut(s) 147, 467
StyD4I CCNGG 3 cut(s) 78, 485, 687
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 3 cut(s) 747, 761, 802
TaiI ACGT 7 cut(s) 93, 126, 510, 536, 576, 649, 897
TaqI TCGA 7 cut(s) 48, 162, 194, 252, 504, 594, 888
TaqII GACCGA 2 cut(s) 247, 261
TasI AATT 1 cut(s) 497
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 2 cut(s) 188, 820
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 3 cut(s) 34, 647, 916
TseI GCWGC 9 cut(s) 96, 102, 331, 474, 541, 544, 547, 555, 640
Tsp45I GTSAC 3 cut(s) 34, 647, 916
TspDTI ATGAA 1 cut(s) 490
TspGWI ACGGA 2 cut(s) 798, 926
TspRI CASTG 1 cut(s) 744
Tth111I GACNNNGTC 5 cut(s) 56, 199, 248, 257, 893
VpaK11BI GGWCC 2 cut(s) 244, 834
XapI RAATTY 1 cut(s) 497
XceI RCATGY 1 cut(s) 769
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 194, 252
ZraI GACGTC 2 cut(s) 124, 895
ZrmI AGTACT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.