Rw6G023110

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010118
Physical Location & Seq
Reverse (-)
45308110 .. 45309622
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023110.1

Sequence Viewer

Length: 939 bp
ATGGCTGGTCTCGTCAGAACCAGAACCAAGAGAGTCACTTACCCGCTCGACGACAAGGTCAAGGCACGACTCGTCGGCCGGGAGAGCTACGTCAGCAGCGGCAGCGAGCACTCCGGCGGCGACGTCTCTCCTTGTCTGTCCGAGCTCGTTCACAGCTTTCTCGAGGAGGAGGAGGAGGAGGAGGAATCGTCGACCTCGTCGTCGGAGCCGCGGTCGCCGGACAACCGCGACTACGACTCGGACCGTGTCGACTCGGTCTCCGATCGTTCCGGCGCGGTGGAGTGCATTTTGAGATATTCGGCGAATGCGGACGCCTACGCCAAGGTGCTGCTCGCTGACGTGGCGGAGGCGGTGGAGGCGTTCTCGTGTCTGAGATCGGACAAGTCGGCCCTGCAGAGGAGCGTCATGTCGTTTCTGAGGGGGAAGGGGCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCAGCATCACCGCCGGGCACTACGAATTCATCGACGTGGTAGCCGCCAACTCGTCCGCCACGTGGCGGCAGCAGCAGAGCAGCAGGTACTTCGTGGACGTGGACTTCGCCGCCGAGTTCGAGATCGCGCGGCCGTCGGGCCAGTACTCGAGGCTGTCGCAGTCGCTGCCACGTCACTTCGTCGGCGGCTCCGACGACCTGAAAAAGATCGTCCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAAAACCGTTACATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAATCCGTTGCCGGAGAATCCGCTCACGCGGACCTCGCCTCTATTCCCACAGGTGTCTGGCGCCAAATGCCGTTGGGTCGGGTTCGACGACGTCGTTTCTGAGACCTGCGCCGTCACCGGCCGCGTCTTTATCCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

312

Amino Acids

34.73

Weight (kDa)

8.4

Isoelectric Point (pI)

61.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 264 2.9e-70 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 199
AatII GACGTC 2 cut(s) 126, 891
Acc36I ACCTGC 2 cut(s) 543, 911
AccB1I GGYRCC 1 cut(s) 857
AccBSI CCGCTC 2 cut(s) 46, 820
AccI GTMKAC 2 cut(s) 191, 249
AccII CGCG 8 cut(s) 211, 228, 275, 596, 598, 698, 826, 921
AcoI YGGCCR 3 cut(s) 76, 599, 916
AcsI RAATTY 1 cut(s) 494
AcvI CACGTG 1 cut(s) 531
AcyI GRCGYC 4 cut(s) 123, 312, 858, 888
AfaI GTAC 4 cut(s) 557, 614, 785, 934
AfiI CCNNNNNNNGG 3 cut(s) 396, 531, 534
AjiI CACGTC 4 cut(s) 340, 505, 568, 641
AluBI AGCT 5 cut(s) 87, 145, 156, 462, 727
AluI AGCT 5 cut(s) 87, 145, 156, 462, 727
Alw21I GWGCWC 3 cut(s) 111, 147, 464
Alw26I GTCTC 4 cut(s) 14, 130, 262, 893
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 2 cut(s) 161, 616
AoxI GGCC 6 cut(s) 76, 387, 599, 607, 779, 916
ApeKI GCWGC 8 cut(s) 96, 102, 328, 471, 538, 541, 549, 634
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AspLEI GCGC 4 cut(s) 275, 598, 860, 908
AspS9I GGNCC 5 cut(s) 241, 388, 607, 779, 828
AsuC2I CCSGG 3 cut(s) 80, 484, 683
AsuHPI GGTGA 2 cut(s) 469, 904
AvaI CYCGRG 2 cut(s) 161, 616
AvaII GGWCC 2 cut(s) 241, 828
BaeGI GKGCMC 2 cut(s) 432, 489
BanI GGYRCC 1 cut(s) 857
BanII GRGCYC 2 cut(s) 147, 464
BauI CACGAG 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 531
Bbv12I GWGCWC 3 cut(s) 111, 147, 464
BbvCI CCTCAGC 1 cut(s) 713
BbvI GCAGC 8 cut(s) 108, 114, 315, 483, 550, 553, 561, 621
BceAI ACGGC 4 cut(s) 586, 766, 852, 893
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BcnI CCSGG 3 cut(s) 80, 484, 683
BcoDI GTCTC 4 cut(s) 14, 130, 262, 893
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 861
BfuAI ACCTGC 2 cut(s) 543, 911
BglI GCCNNNNNGGC 1 cut(s) 742
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 3 cut(s) 80, 484, 683
Bme18I GGWCC 2 cut(s) 241, 828
BmeT110I CYCGRG 2 cut(s) 161, 616
BmgBI CACGTC 4 cut(s) 340, 505, 568, 641
BmgT120I GGNCC 5 cut(s) 241, 388, 607, 779, 828
BmiI GGNNCC 4 cut(s) 207, 658, 719, 859
BmrFI CCNGG 3 cut(s) 80, 484, 683
BmsI GCATC 1 cut(s) 483
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 713
BpuMI CCSGG 3 cut(s) 80, 484, 683
BsaAI YACGTR 1 cut(s) 531
BsaHI GRCGYC 4 cut(s) 123, 312, 858, 888
BsaI GGTCTC 3 cut(s) 14, 262, 893
BsaJI CCNNGG 3 cut(s) 209, 321, 740
BsaXI ACNNNNNCTCC 6 cut(s) 173, 197, 203, 227, 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 531, 534
Bse118I RCCGGY 2 cut(s) 467, 914
Bse1I ACTGG 1 cut(s) 610
BseDI CCNNGG 3 cut(s) 209, 321, 740
BseLI CCNNNNNNNGG 3 cut(s) 396, 531, 534
BseMII CTCAG 4 cut(s) 362, 407, 704, 888
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 8 cut(s) 179, 182, 185, 188, 191, 194, 412, 730
BseSI GKGCMC 2 cut(s) 432, 489
BseX3I CGGCCG 3 cut(s) 76, 599, 916
BseXI GCAGC 8 cut(s) 108, 114, 315, 483, 550, 553, 561, 621
Bsh1236I CGCG 8 cut(s) 211, 228, 275, 596, 598, 698, 826, 921
Bsh1285I CGRYCG 5 cut(s) 79, 215, 265, 602, 919
BshFI GGCC 6 cut(s) 78, 389, 601, 609, 781, 918
BshNI GGYRCC 1 cut(s) 857
BsiEI CGRYCG 5 cut(s) 79, 215, 265, 602, 919
BsiHKAI GWGCWC 3 cut(s) 111, 147, 464
BsiHKCI CYCGRG 2 cut(s) 161, 616
BsiSI CCGG 9 cut(s) 79, 114, 218, 270, 468, 483, 682, 809, 915
BslI CCNNNNNNNGG 3 cut(s) 396, 531, 534
BsmAI GTCTC 4 cut(s) 14, 130, 262, 893
BsmBI CGTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 6 cut(s) 78, 389, 601, 609, 781, 918
Bso31I GGTCTC 3 cut(s) 14, 262, 893
BsoBI CYCGRG 2 cut(s) 161, 616
Bsp1286I GDGCHC 5 cut(s) 111, 147, 432, 464, 489
Bsp143I GATC 5 cut(s) 262, 374, 441, 591, 675
BspANI GGCC 6 cut(s) 78, 389, 601, 609, 781, 918
BspCNI CTCAG 4 cut(s) 363, 408, 705, 889
BspFNI CGCG 8 cut(s) 211, 228, 275, 596, 598, 698, 826, 921
BspLI GGNNCC 4 cut(s) 207, 658, 719, 859
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 2 cut(s) 543, 911
BspT107I GGYRCC 1 cut(s) 857
BspTNI GGTCTC 3 cut(s) 14, 262, 893
BsrBI CCGCTC 2 cut(s) 46, 820
BsrFI RCCGGY 2 cut(s) 467, 914
BsrI ACTGG 1 cut(s) 610
BssAI RCCGGY 2 cut(s) 467, 914
BssECI CCNNGG 3 cut(s) 209, 321, 740
BssMI GATC 5 cut(s) 262, 374, 441, 591, 675
BssNI GRCGYC 4 cut(s) 123, 312, 858, 888
BssSI CACGAG 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 364
Bst4CI ACNGT 4 cut(s) 245, 741, 755, 796
BstACI GRCGYC 4 cut(s) 123, 312, 858, 888
BstAPI GCANNNNNTGC 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 107, 333, 469
BstDEI CTNAG 5 cut(s) 371, 416, 713, 897, 936
BstDSI CCRYGG 2 cut(s) 209, 740
BstFNI CGCG 8 cut(s) 211, 228, 275, 596, 598, 698, 826, 921
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 4 cut(s) 275, 598, 860, 908
BstKTI GATC 5 cut(s) 265, 377, 444, 594, 678
BstMAI GTCTC 4 cut(s) 14, 130, 262, 893
BstMBI GATC 5 cut(s) 262, 374, 441, 591, 675
BstMCI CGRYCG 5 cut(s) 79, 215, 265, 602, 919
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 3 cut(s) 78, 482, 681
BstSFI CTRYAG 1 cut(s) 392
BstSLI GKGCMC 2 cut(s) 432, 489
BstUI CGCG 8 cut(s) 211, 228, 275, 596, 598, 698, 826, 921
BstV1I GCAGC 8 cut(s) 108, 114, 315, 483, 550, 553, 561, 621
BstZI CGGCCG 3 cut(s) 76, 599, 916
BsuRI GGCC 6 cut(s) 78, 389, 601, 609, 781, 918
BtgI CCRYGG 2 cut(s) 209, 740
BtrI CACGTC 4 cut(s) 340, 505, 568, 641
BtsIMutI CAGTG 1 cut(s) 738
BveI ACCTGC 2 cut(s) 543, 911
Cac8I GCNNGC 3 cut(s) 107, 333, 469
CaiI CAGNNNCTG 1 cut(s) 634
CfoI GCGC 4 cut(s) 275, 598, 860, 908
Cfr10I RCCGGY 2 cut(s) 467, 914
Cfr13I GGNCC 5 cut(s) 241, 388, 607, 779, 828
Cfr42I CCGCGG 1 cut(s) 212
CpoI CGGWCCG 1 cut(s) 241
CseI GACGC 4 cut(s) 320, 391, 704, 910
Csp6I GTAC 4 cut(s) 556, 613, 784, 933
CspI CGGWCCG 1 cut(s) 241
CviAII CATG 3 cut(s) 406, 688, 760
CviQI GTAC 4 cut(s) 556, 613, 784, 933
DdeI CTNAG 5 cut(s) 371, 416, 713, 897, 936
DinI GGCGCC 1 cut(s) 859
DpnI GATC 5 cut(s) 264, 376, 443, 593, 677
DpnII GATC 5 cut(s) 262, 374, 441, 591, 675
DrdI GACNNNNNNGTC 2 cut(s) 56, 199
DseDI GACNNNNNNGTC 2 cut(s) 56, 199
EaeI YGGCCR 3 cut(s) 76, 599, 916
EagI CGGCCG 3 cut(s) 76, 599, 916
EciI GGCGGA 4 cut(s) 359, 454, 514, 760
Ecl136II GAGCTC 2 cut(s) 145, 462
EclXI CGGCCG 3 cut(s) 76, 599, 916
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 2 cut(s) 147, 464
Eco31I GGTCTC 3 cut(s) 14, 262, 893
Eco47I GGWCC 2 cut(s) 241, 828
Eco52I CGGCCG 3 cut(s) 76, 599, 916
Eco53kI GAGCTC 2 cut(s) 145, 462
Eco72I CACGTG 1 cut(s) 531
Eco88I CYCGRG 2 cut(s) 161, 616
EcoICRI GAGCTC 2 cut(s) 145, 462
EcoRI GAATTC 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 2 cut(s) 147, 464
EgeI GGCGCC 1 cut(s) 859
EheI GGCGCC 1 cut(s) 859
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 3 cut(s) 409, 691, 763
FaiI YATR 3 cut(s) 407, 689, 761
FatI CATG 3 cut(s) 405, 687, 759
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 2 cut(s) 191, 249
FriOI GRGCYC 2 cut(s) 147, 464
GlaI GCGC 4 cut(s) 274, 597, 859, 907
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 6 cut(s) 78, 389, 601, 609, 781, 918
HapII CCGG 9 cut(s) 79, 114, 218, 270, 468, 483, 682, 809, 915
HgaI GACGC 4 cut(s) 320, 391, 704, 910
HhaI GCGC 4 cut(s) 275, 598, 860, 908
Hin1I GRCGYC 4 cut(s) 123, 312, 858, 888
Hin1II CATG 3 cut(s) 409, 691, 763
Hin6I GCGC 4 cut(s) 273, 596, 858, 906
HinP1I GCGC 4 cut(s) 273, 596, 858, 906
HincII GTYRAC 2 cut(s) 192, 250
HindII GTYRAC 2 cut(s) 192, 250
HinfI GANTC 6 cut(s) 33, 69, 185, 236, 251, 814
HpaII CCGG 9 cut(s) 79, 114, 218, 270, 468, 483, 682, 809, 915
HphI GGTGA 2 cut(s) 469, 904
Hpy166II GTNNAC 5 cut(s) 151, 192, 250, 565, 571
Hpy188III TCNNGA 2 cut(s) 161, 589
Hpy8I GTNNAC 5 cut(s) 151, 192, 250, 565, 571
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 4 cut(s) 245, 741, 755, 796
HpyCH4IV ACGT 8 cut(s) 90, 123, 339, 504, 530, 567, 640, 888
HpyCH4V TGCA 4 cut(s) 285, 394, 447, 763
HpyF3I CTNAG 5 cut(s) 371, 416, 713, 897, 936
HpySE526I ACGT 8 cut(s) 90, 123, 339, 504, 530, 567, 640, 888
Hsp92I GRCGYC 4 cut(s) 123, 312, 858, 888
Hsp92II CATG 3 cut(s) 409, 691, 763
HspAI GCGC 4 cut(s) 273, 596, 858, 906
KasI GGCGCC 1 cut(s) 857
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
KspI CCGCGG 1 cut(s) 212
Kzo9I GATC 5 cut(s) 262, 374, 441, 591, 675
LmnI GCTCC 6 cut(s) 205, 399, 459, 467, 662, 717
Lsp1109I GCAGC 8 cut(s) 108, 114, 315, 483, 550, 553, 561, 621
LweI GCATC 1 cut(s) 483
MaeII ACGT 8 cut(s) 90, 123, 339, 504, 530, 567, 640, 888
MaeIII GTNAC 4 cut(s) 34, 641, 755, 910
MalI GATC 5 cut(s) 264, 376, 443, 593, 677
MbiI CCGCTC 2 cut(s) 46, 820
MboI GATC 5 cut(s) 262, 374, 441, 591, 675
MboII GAAGA 1 cut(s) 715
MhlI GDGCHC 5 cut(s) 111, 147, 432, 464, 489
MluCI AATT 1 cut(s) 494
Mly113I GGCGCC 1 cut(s) 858
MlyI GAGTC 4 cut(s) 42, 63, 230, 245
MmeI TCCRAC 2 cut(s) 183, 684
MroNI GCCGGC 1 cut(s) 467
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 99, 211
MspI CCGG 9 cut(s) 79, 114, 218, 270, 468, 483, 682, 809, 915
MspR9I CCNGG 3 cut(s) 80, 484, 683
Mva1269I GAATGC 1 cut(s) 310
MvnI CGCG 8 cut(s) 211, 228, 275, 596, 598, 698, 826, 921
NaeI GCCGGC 1 cut(s) 469
NarI GGCGCC 1 cut(s) 858
NciI CCSGG 3 cut(s) 80, 484, 683
NdeII GATC 5 cut(s) 262, 374, 441, 591, 675
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 3 cut(s) 409, 691, 763
NlaIV GGNNCC 4 cut(s) 207, 658, 719, 859
NmeAIII GCCGAG 2 cut(s) 607, 746
NmuCI GTSAC 3 cut(s) 34, 641, 910
NspI RCATGY 1 cut(s) 763
PaeR7I CTCGAG 2 cut(s) 161, 616
PcsI WCGNNNNNNNCGW 8 cut(s) 194, 197, 498, 527, 657, 800, 882, 888
PctI GAATGC 1 cut(s) 310
PdiI GCCGGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 185, 814
PflFI GACNNNGTC 5 cut(s) 56, 196, 245, 254, 887
Ple19I CGATCG 1 cut(s) 265
PleI GAGTC 4 cut(s) 41, 63, 230, 245
PluTI GGCGCC 1 cut(s) 861
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 4 cut(s) 41, 63, 230, 245
Ppu21I YACGTR 1 cut(s) 531
Psp124BI GAGCTC 2 cut(s) 147, 464
PspCI CACGTG 1 cut(s) 531
PspN4I GGNNCC 4 cut(s) 207, 658, 719, 859
PspPI GGNCC 5 cut(s) 241, 388, 607, 779, 828
PspXI VCTCGAGB 1 cut(s) 616
PstI CTGCAG 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 634
PsyI GACNNNGTC 5 cut(s) 56, 196, 245, 254, 887
PvuI CGATCG 1 cut(s) 265
RsaI GTAC 4 cut(s) 557, 614, 785, 934
RsaNI GTAC 4 cut(s) 556, 613, 784, 933
RseI CAYNNNNRTG 1 cut(s) 503
Rsr2I CGGWCCG 1 cut(s) 241
RsrII CGGWCCG 1 cut(s) 241
SacI GAGCTC 2 cut(s) 147, 464
SacII CCGCGG 1 cut(s) 212
SalI GTCGAC 2 cut(s) 190, 248
SaqAI TTAA 1 cut(s) 798
Sau3AI GATC 5 cut(s) 262, 374, 441, 591, 675
Sau96I GGNCC 5 cut(s) 241, 388, 607, 779, 828
ScaI AGTACT 1 cut(s) 614
SchI GAGTC 4 cut(s) 42, 63, 230, 245
ScrFI CCNGG 3 cut(s) 80, 484, 683
SduI GDGCHC 5 cut(s) 111, 147, 432, 464, 489
SfaNI GCATC 1 cut(s) 483
SfcI CTRYAG 1 cut(s) 392
SfoI GGCGCC 1 cut(s) 859
Sfr274I CTCGAG 2 cut(s) 161, 616
Sfr303I CCGCGG 1 cut(s) 212
SgrBI CCGCGG 1 cut(s) 212
SinI GGWCC 2 cut(s) 241, 828
SlaI CTCGAG 2 cut(s) 161, 616
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 161, 616
SmoI CTYRAG 2 cut(s) 161, 616
Sse9I AATT 1 cut(s) 494
SspDI GGCGCC 1 cut(s) 857
SstI GAGCTC 2 cut(s) 147, 464
StyD4I CCNGG 3 cut(s) 78, 482, 681
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 4 cut(s) 245, 741, 755, 796
TaiI ACGT 8 cut(s) 93, 126, 342, 507, 533, 570, 643, 891
TaqI TCGA 8 cut(s) 48, 162, 191, 249, 501, 588, 617, 882
TaqII GACCGA 1 cut(s) 244
TasI AATT 1 cut(s) 494
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 2 cut(s) 185, 814
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 3 cut(s) 34, 641, 910
TseI GCWGC 8 cut(s) 96, 102, 328, 471, 538, 541, 549, 634
Tsp45I GTSAC 3 cut(s) 34, 641, 910
TspDTI ATGAA 1 cut(s) 487
TspGWI ACGGA 2 cut(s) 792, 920
TspRI CASTG 1 cut(s) 738
Tth111I GACNNNGTC 5 cut(s) 56, 196, 245, 254, 887
VpaK11BI GGWCC 2 cut(s) 241, 828
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 763
XhoI CTCGAG 2 cut(s) 161, 616
XmiI GTMKAC 2 cut(s) 191, 249
ZraI GACGTC 2 cut(s) 124, 889
ZrmI AGTACT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.