Rroxscaffold_7G00185490

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010118
Physical Location & Seq
Forward (+)
24895736 .. 24896668
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185490.1

Sequence Viewer

Length: 933 bp
ATGGCTGGTCTCGTCAGAACCAGAACCAAGAGAGTCACTTACCCGCTCGACGACAAGGTCAAGGCACGACTCGTCGGCCGGGAGAGCTACGTCAGCAGCGGCAGCGAGCACTCCGGCGATGACGTCTCTCCTTGTCTGTCCGAGCTCGTTCACAGCTTTCTCGAGGAGGAGGAGGAGGAGGAAGAATCTTCGTCGTCGGAGCCGCGGTCGCCGGACAACCGCGACTACGACTCGGACCGAGTCGACTCGGTCCCTGATCGCTCCGGCGCGGTGGAGTGCATTTTGAGATATTCGGCGAATGCGGACTCCTACGCCAAGGTGCTGCTCGCTGACGTGGCGGAGGCGGTGGAGGCGTTCTCGTGTCTGAGATCGGACAAGTCGGCTCTGCAGAGGAGCGTCACGTCGTTTCTGAGGGGGAAGGGGCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCAGCATCACCGCCGGGCACTACGAGTTCATCGACGTGGTAGCCGCCAACTCGTCCGCCACGTGGCGGCAGCAGCAGAGCAGCAGGTACTTCGTGGACGTGGACTTCGCCGCCGAGTTCGAGATCGCGCGGCCGTCGGGCCAGTACTCGCGGCTGACGCAGTCGCTGCCACGTCACTTCGTCGGCGGCTCCGACGACCTGAAAAAGATCGTCCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAAAACCGTTATATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAACCCGTTGCCGGAGAATCCGCTCACGCGGACCTCGCCTCTGTTCGCACAGGTGTCTGGCGCCAAATGCCGTTGGGTCGGGTTCGACGACGTCGTTTCTGAGACCAGCGCCGTCACCGGCCGCGTCTTTATCCGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

310

Amino Acids

34.58

Weight (kDa)

8.15

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 262 7.4e-70 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 2 cut(s) 126, 885
Acc36I ACCTGC 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 851
AccBSI CCGCTC 2 cut(s) 46, 814
AccI GTMKAC 1 cut(s) 243
AccII CGCG 9 cut(s) 205, 222, 269, 590, 592, 613, 692, 820, 915
AcoI YGGCCR 3 cut(s) 76, 593, 910
AcvI CACGTG 1 cut(s) 525
AcyI GRCGYC 3 cut(s) 123, 852, 882
AfaI GTAC 3 cut(s) 551, 608, 779
AfiI CCNNNNNNNGG 3 cut(s) 525, 528, 802
AjiI CACGTC 5 cut(s) 334, 402, 499, 562, 635
AluBI AGCT 5 cut(s) 87, 145, 156, 456, 721
AluI AGCT 5 cut(s) 87, 145, 156, 456, 721
Alw21I GWGCWC 3 cut(s) 111, 147, 458
Alw26I GTCTC 3 cut(s) 14, 130, 887
AlwNI CAGNNNCTG 1 cut(s) 628
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 5 cut(s) 76, 593, 601, 773, 910
ApeKI GCWGC 8 cut(s) 96, 102, 322, 465, 532, 535, 543, 628
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspLEI GCGC 4 cut(s) 269, 592, 854, 902
AspS9I GGNCC 5 cut(s) 235, 250, 601, 773, 822
AsuC2I CCSGG 3 cut(s) 80, 478, 677
AsuHPI GGTGA 2 cut(s) 463, 898
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 3 cut(s) 235, 250, 822
BaeGI GKGCMC 2 cut(s) 426, 483
BanI GGYRCC 1 cut(s) 851
BanII GRGCYC 2 cut(s) 147, 458
BauI CACGAG 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 525
Bbv12I GWGCWC 3 cut(s) 111, 147, 458
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 8 cut(s) 108, 114, 309, 477, 544, 547, 555, 615
BceAI ACGGC 4 cut(s) 580, 760, 846, 887
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BcnI CCSGG 3 cut(s) 80, 478, 677
BcoDI GTCTC 3 cut(s) 14, 130, 887
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 855, 903
BfuAI ACCTGC 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 736
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 3 cut(s) 80, 478, 677
Bme18I GGWCC 3 cut(s) 235, 250, 822
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 5 cut(s) 334, 402, 499, 562, 635
BmgT120I GGNCC 5 cut(s) 235, 250, 601, 773, 822
BmiI GGNNCC 5 cut(s) 201, 252, 652, 713, 853
BmrFI CCNGG 3 cut(s) 80, 478, 677
BmsI GCATC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 341, 373
Bpu10I CCTNAGC 1 cut(s) 707
BpuMI CCSGG 3 cut(s) 80, 478, 677
BsaAI YACGTR 1 cut(s) 525
BsaHI GRCGYC 3 cut(s) 123, 852, 882
BsaI GGTCTC 2 cut(s) 14, 887
BsaJI CCNNGG 3 cut(s) 203, 315, 734
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 528, 802
Bse118I RCCGGY 2 cut(s) 461, 908
Bse1I ACTGG 1 cut(s) 604
BseDI CCNNGG 3 cut(s) 203, 315, 734
BseLI CCNNNNNNNGG 3 cut(s) 525, 528, 802
BseMII CTCAG 4 cut(s) 356, 401, 698, 882
BseNI ACTGG 1 cut(s) 604
BseRI GAGGAG 7 cut(s) 179, 182, 185, 188, 191, 406, 724
BseSI GKGCMC 2 cut(s) 426, 483
BseX3I CGGCCG 3 cut(s) 76, 593, 910
BseXI GCAGC 8 cut(s) 108, 114, 309, 477, 544, 547, 555, 615
Bsh1236I CGCG 9 cut(s) 205, 222, 269, 590, 592, 613, 692, 820, 915
Bsh1285I CGRYCG 4 cut(s) 79, 209, 596, 913
BshFI GGCC 5 cut(s) 78, 595, 603, 775, 912
BshNI GGYRCC 1 cut(s) 851
BsiEI CGRYCG 4 cut(s) 79, 209, 596, 913
BsiHKAI GWGCWC 3 cut(s) 111, 147, 458
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 676, 803, 909
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 525, 528, 802
BsmAI GTCTC 3 cut(s) 14, 130, 887
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 5 cut(s) 78, 595, 603, 775, 912
Bso31I GGTCTC 2 cut(s) 14, 887
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 111, 147, 426, 458, 483
Bsp143I GATC 5 cut(s) 256, 368, 435, 585, 669
BspANI GGCC 5 cut(s) 78, 595, 603, 775, 912
BspCNI CTCAG 4 cut(s) 357, 402, 699, 883
BspFNI CGCG 9 cut(s) 205, 222, 269, 590, 592, 613, 692, 820, 915
BspLI GGNNCC 5 cut(s) 201, 252, 652, 713, 853
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 851
BspTNI GGTCTC 2 cut(s) 14, 887
BsrBI CCGCTC 2 cut(s) 46, 814
BsrFI RCCGGY 2 cut(s) 461, 908
BsrI ACTGG 1 cut(s) 604
BssAI RCCGGY 2 cut(s) 461, 908
BssECI CCNNGG 3 cut(s) 203, 315, 734
BssMI GATC 5 cut(s) 256, 368, 435, 585, 669
BssNI GRCGYC 3 cut(s) 123, 852, 882
BssSI CACGAG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 735, 749, 790
BstACI GRCGYC 3 cut(s) 123, 852, 882
BstAPI GCANNNNNTGC 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 107, 327, 463
BstDEI CTNAG 4 cut(s) 365, 410, 707, 891
BstDSI CCRYGG 2 cut(s) 203, 734
BstFNI CGCG 9 cut(s) 205, 222, 269, 590, 592, 613, 692, 820, 915
BstH2I RGCGCY 2 cut(s) 855, 903
BstHHI GCGC 4 cut(s) 269, 592, 854, 902
BstKTI GATC 5 cut(s) 259, 371, 438, 588, 672
BstMAI GTCTC 3 cut(s) 14, 130, 887
BstMBI GATC 5 cut(s) 256, 368, 435, 585, 669
BstMCI CGRYCG 4 cut(s) 79, 209, 596, 913
BstSCI CCNGG 3 cut(s) 78, 476, 675
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 2 cut(s) 426, 483
BstUI CGCG 9 cut(s) 205, 222, 269, 590, 592, 613, 692, 820, 915
BstV1I GCAGC 8 cut(s) 108, 114, 309, 477, 544, 547, 555, 615
BstZI CGGCCG 3 cut(s) 76, 593, 910
BsuRI GGCC 5 cut(s) 78, 595, 603, 775, 912
BtgI CCRYGG 2 cut(s) 203, 734
BtgZI GCGATG 1 cut(s) 132
BtrI CACGTC 5 cut(s) 334, 402, 499, 562, 635
BtsIMutI CAGTG 1 cut(s) 732
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 3 cut(s) 107, 327, 463
CaiI CAGNNNCTG 1 cut(s) 628
CfoI GCGC 4 cut(s) 269, 592, 854, 902
Cfr10I RCCGGY 2 cut(s) 461, 908
Cfr13I GGNCC 5 cut(s) 235, 250, 601, 773, 822
Cfr42I CCGCGG 1 cut(s) 206
CpoI CGGWCCG 1 cut(s) 235
CseI GACGC 4 cut(s) 385, 628, 698, 904
Csp6I GTAC 3 cut(s) 550, 607, 778
CspI CGGWCCG 1 cut(s) 235
CviAII CATG 1 cut(s) 682
CviQI GTAC 3 cut(s) 550, 607, 778
DdeI CTNAG 4 cut(s) 365, 410, 707, 891
DinI GGCGCC 1 cut(s) 853
DpnI GATC 5 cut(s) 258, 370, 437, 587, 671
DpnII GATC 5 cut(s) 256, 368, 435, 585, 669
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 3 cut(s) 76, 593, 910
EagI CGGCCG 3 cut(s) 76, 593, 910
EciI GGCGGA 4 cut(s) 353, 448, 508, 754
Ecl136II GAGCTC 2 cut(s) 145, 456
EclXI CGGCCG 3 cut(s) 76, 593, 910
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 147, 458
Eco31I GGTCTC 2 cut(s) 14, 887
Eco47I GGWCC 3 cut(s) 235, 250, 822
Eco52I CGGCCG 3 cut(s) 76, 593, 910
Eco53kI GAGCTC 2 cut(s) 145, 456
Eco72I CACGTG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 2 cut(s) 145, 456
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 2 cut(s) 147, 458
EgeI GGCGCC 1 cut(s) 853
EheI GGCGCC 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 1 cut(s) 685
FaiI YATR 3 cut(s) 683, 753, 755
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 681
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 243
FriOI GRGCYC 2 cut(s) 147, 458
GlaI GCGC 4 cut(s) 268, 591, 853, 901
HaeII RGCGCY 2 cut(s) 855, 903
HaeIII GGCC 5 cut(s) 78, 595, 603, 775, 912
HapII CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 676, 803, 909
HgaI GACGC 4 cut(s) 385, 628, 698, 904
HhaI GCGC 4 cut(s) 269, 592, 854, 902
Hin1I GRCGYC 3 cut(s) 123, 852, 882
Hin1II CATG 1 cut(s) 685
Hin6I GCGC 4 cut(s) 267, 590, 852, 900
HinP1I GCGC 4 cut(s) 267, 590, 852, 900
HincII GTYRAC 2 cut(s) 244, 793
HindII GTYRAC 2 cut(s) 244, 793
HinfI GANTC 8 cut(s) 33, 69, 185, 230, 240, 245, 305, 808
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 676, 803, 909
HphI GGTGA 2 cut(s) 463, 898
Hpy166II GTNNAC 5 cut(s) 151, 244, 559, 565, 793
Hpy188I TCNGA 9 cut(s) 17, 142, 199, 235, 366, 373, 411, 655, 892
Hpy188III TCNNGA 2 cut(s) 161, 583
Hpy8I GTNNAC 5 cut(s) 151, 244, 559, 565, 793
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 3 cut(s) 735, 749, 790
HpyCH4IV ACGT 9 cut(s) 90, 123, 333, 401, 498, 524, 561, 634, 882
HpyCH4V TGCA 4 cut(s) 279, 388, 441, 757
HpyF3I CTNAG 4 cut(s) 365, 410, 707, 891
HpySE526I ACGT 9 cut(s) 90, 123, 333, 401, 498, 524, 561, 634, 882
Hsp92I GRCGYC 3 cut(s) 123, 852, 882
Hsp92II CATG 1 cut(s) 685
HspAI GCGC 4 cut(s) 267, 590, 852, 900
KasI GGCGCC 1 cut(s) 851
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 793
KspI CCGCGG 1 cut(s) 206
Kzo9I GATC 5 cut(s) 256, 368, 435, 585, 669
LmnI GCTCC 7 cut(s) 199, 266, 393, 453, 461, 656, 711
Lsp1109I GCAGC 8 cut(s) 108, 114, 309, 477, 544, 547, 555, 615
LweI GCATC 1 cut(s) 477
MaeII ACGT 9 cut(s) 90, 123, 333, 401, 498, 524, 561, 634, 882
MaeIII GTNAC 4 cut(s) 34, 397, 635, 904
MalI GATC 5 cut(s) 258, 370, 437, 587, 671
MbiI CCGCTC 2 cut(s) 46, 814
MboI GATC 5 cut(s) 256, 368, 435, 585, 669
MboII GAAGA 3 cut(s) 180, 194, 709
MhlI GDGCHC 5 cut(s) 111, 147, 426, 458, 483
Mly113I GGCGCC 1 cut(s) 852
MlyI GAGTC 6 cut(s) 42, 63, 224, 239, 249, 299
MmeI TCCRAC 2 cut(s) 177, 678
MroNI GCCGGC 1 cut(s) 461
MseI TTAA 1 cut(s) 792
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 99, 205
MspI CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 676, 803, 909
MspR9I CCNGG 3 cut(s) 80, 478, 677
Mva1269I GAATGC 1 cut(s) 304
MvnI CGCG 9 cut(s) 205, 222, 269, 590, 592, 613, 692, 820, 915
NaeI GCCGGC 1 cut(s) 463
NarI GGCGCC 1 cut(s) 852
NciI CCSGG 3 cut(s) 80, 478, 677
NdeII GATC 5 cut(s) 256, 368, 435, 585, 669
NgoMIV GCCGGC 1 cut(s) 461
NlaIII CATG 1 cut(s) 685
NlaIV GGNNCC 5 cut(s) 201, 252, 652, 713, 853
NmeAIII GCCGAG 2 cut(s) 601, 740
NmuCI GTSAC 4 cut(s) 34, 397, 635, 904
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 6 cut(s) 492, 521, 651, 794, 876, 882
PctI GAATGC 1 cut(s) 304
PdiI GCCGGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 185, 808
PflFI GACNNNGTC 5 cut(s) 56, 239, 248, 622, 881
PleI GAGTC 6 cut(s) 41, 63, 224, 239, 248, 299
PluTI GGCGCC 1 cut(s) 855
PmaCI CACGTG 1 cut(s) 525
PmlI CACGTG 1 cut(s) 525
PpsI GAGTC 6 cut(s) 41, 63, 224, 239, 248, 299
Ppu21I YACGTR 1 cut(s) 525
Psp124BI GAGCTC 2 cut(s) 147, 458
PspCI CACGTG 1 cut(s) 525
PspN4I GGNNCC 5 cut(s) 201, 252, 652, 713, 853
PspPI GGNCC 5 cut(s) 235, 250, 601, 773, 822
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 628
PsyI GACNNNGTC 5 cut(s) 56, 239, 248, 622, 881
RsaI GTAC 3 cut(s) 551, 608, 779
RsaNI GTAC 3 cut(s) 550, 607, 778
RseI CAYNNNNRTG 1 cut(s) 497
Rsr2I CGGWCCG 1 cut(s) 235
RsrII CGGWCCG 1 cut(s) 235
SacI GAGCTC 2 cut(s) 147, 458
SacII CCGCGG 1 cut(s) 206
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 792
Sau3AI GATC 5 cut(s) 256, 368, 435, 585, 669
Sau96I GGNCC 5 cut(s) 235, 250, 601, 773, 822
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 6 cut(s) 42, 63, 224, 239, 249, 299
ScrFI CCNGG 3 cut(s) 80, 478, 677
SduI GDGCHC 5 cut(s) 111, 147, 426, 458, 483
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 386
SfoI GGCGCC 1 cut(s) 853
Sfr274I CTCGAG 1 cut(s) 161
Sfr303I CCGCGG 1 cut(s) 206
SgrBI CCGCGG 1 cut(s) 206
SinI GGWCC 3 cut(s) 235, 250, 822
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SspDI GGCGCC 1 cut(s) 851
SstI GAGCTC 2 cut(s) 147, 458
StyD4I CCNGG 3 cut(s) 78, 476, 675
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 735, 749, 790
TaiI ACGT 9 cut(s) 93, 126, 336, 404, 501, 527, 564, 637, 885
TaqI TCGA 6 cut(s) 48, 162, 243, 495, 582, 876
TaqII GACCGA 2 cut(s) 238, 252
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 2 cut(s) 185, 808
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 4 cut(s) 34, 397, 635, 904
TseI GCWGC 8 cut(s) 96, 102, 322, 465, 532, 535, 543, 628
Tsp45I GTSAC 4 cut(s) 34, 397, 635, 904
TspDTI ATGAA 1 cut(s) 481
TspGWI ACGGA 1 cut(s) 914
TspRI CASTG 1 cut(s) 732
Tth111I GACNNNGTC 5 cut(s) 56, 239, 248, 622, 881
VpaK11BI GGWCC 3 cut(s) 235, 250, 822
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 243
ZraI GACGTC 2 cut(s) 124, 883
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.