MD07G1000200.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010118
Physical Location & Seq
Forward (+)
48241 .. 48822
582 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1000200.v1.1.491

Sequence Viewer

Length: 582 bp
ATGGCTGGTTTTGTTAGAACCAGATCGAAGAGGGTCACTTACCTGCTCGACGATCGGGTGAAAGAGCGACTAGTCGGCGGATACAGCTCCGGACTCAGTGATGTCAGCAGCGGAAGCGAGCACTCCGGCGACTACAACTCCCCCTACCTTTCCGAGCTCGTCCATCGCTTCCTCCAAGACGACGAGTCGTCCACCGCTGGTTTTCCCGACAACGAGTCCGACTCGGACCGAGTCGACTCGGCCTCTGACGCGGACGTGATCGACTCCGTCCTTAGGTCCATGGCCGTTTCTGGAAATGCGGACTCGTACCTGATGCTGCTCCATTCTTACGTTTCCCAGGCGGAGGAGGCGTTCGCGTGTTTGAGATCCAATGGCGGCAGCAGCAGCAGGTCGGCTCTGCGGCGGAGCGTGATGTTGTTTCTAAGGGGATTGGGACACAATGCGGCGATCTGCAAGACGAAATGGACCTCCTCCGACAACGTCACCTCCGGGAGCTACGAGTTCATCGACGTCGTTCTTGTCCAATCGGGCTCTTCCATGTGGCAGAGCCGGTACTTCGTGGACCTCCATCGCCCCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

194

Amino Acids

21.16

Weight (kDa)

5.3

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 52 - 189 3.9e-22 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 513
Acc36I ACCTGC 2 cut(s) 51, 378
AccI GTMKAC 1 cut(s) 234
AccII CGCG 2 cut(s) 251, 356
AccIII TCCGGA 1 cut(s) 89
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 2 cut(s) 308, 554
AfiI CCNNNNNNNGG 2 cut(s) 273, 343
AhdI GACNNNNNGTC 3 cut(s) 184, 187, 214
AhlI ACTAGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 336
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 3 cut(s) 87, 157, 495
AluI AGCT 3 cut(s) 87, 157, 495
Alw21I GWGCWC 2 cut(s) 123, 159
AlwI GGATC 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 2 cut(s) 240, 282
ApeKI GCWGC 5 cut(s) 108, 316, 378, 381, 384
AspS9I GGNCC 4 cut(s) 226, 276, 465, 562
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 70, 475
AvaII GGWCC 4 cut(s) 226, 276, 465, 562
AxyI CCTNAGG 1 cut(s) 272
BanII GRGCYC 2 cut(s) 159, 533
Bbv12I GWGCWC 2 cut(s) 123, 159
BbvI GCAGC 5 cut(s) 120, 303, 390, 393, 396
BccI CCATC 2 cut(s) 171, 576
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 490
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 2 cut(s) 51, 378
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 8 cut(s) 109, 317, 376, 379, 382, 385, 401, 444
BlsI GCNGC 8 cut(s) 110, 318, 377, 380, 383, 386, 402, 445
Bme1390I CCNGG 2 cut(s) 338, 490
Bme18I GGWCC 4 cut(s) 226, 276, 465, 562
BmeRI GACNNNNNGTC 3 cut(s) 184, 187, 214
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 4 cut(s) 226, 276, 465, 562
BmrFI CCNGG 2 cut(s) 338, 490
BmsI GCATC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpuMI CCSGG 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 279, 336
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 6 cut(s) 122, 152, 335, 365, 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 343
Bse118I RCCGGY 1 cut(s) 549
Bse21I CCTNAGG 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 89
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 279, 336
BseLI CCNNNNNNNGG 2 cut(s) 273, 343
BseMII CTCAG 1 cut(s) 109
BseRI GAGGAG 2 cut(s) 359, 460
BseXI GCAGC 5 cut(s) 120, 303, 390, 393, 396
Bsh1236I CGCG 2 cut(s) 251, 356
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 242, 284
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 2 cut(s) 123, 159
BsiSI CCGG 4 cut(s) 90, 126, 489, 550
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 273, 343
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 2 cut(s) 242, 284
Bsp1286I GDGCHC 3 cut(s) 123, 159, 533
Bsp13I TCCGGA 1 cut(s) 89
Bsp143I GATC 5 cut(s) 23, 52, 258, 365, 447
Bsp19I CCATGG 1 cut(s) 279
BspANI GGCC 2 cut(s) 242, 284
BspCNI CTCAG 1 cut(s) 108
BspEI TCCGGA 1 cut(s) 89
BspFNI CGCG 2 cut(s) 251, 356
BspMI ACCTGC 2 cut(s) 51, 378
BspPI GGATC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 279, 336
BssMI GATC 5 cut(s) 23, 52, 258, 365, 447
BssNI GRCGYC 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 338
Bst6I CTCTTC 2 cut(s) 23, 538
BstACI GRCGYC 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 95, 272, 422
BstDSI CCRYGG 1 cut(s) 279
BstFNI CGCG 2 cut(s) 251, 356
BstKTI GATC 5 cut(s) 26, 55, 261, 368, 450
BstMBI GATC 5 cut(s) 23, 52, 258, 365, 447
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 6 cut(s) 84, 114, 248, 347, 381, 384
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 336, 488
BstUI CGCG 2 cut(s) 251, 356
BstV1I GCAGC 5 cut(s) 120, 303, 390, 393, 396
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 272
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 242, 284
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 2 cut(s) 149, 554
BtrI CACGTC 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 2 cut(s) 51, 378
Cac8I GCNNGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 549
Cfr13I GGNCC 4 cut(s) 226, 276, 465, 562
CpoI CGGWCCG 1 cut(s) 226
CseI GACGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 307, 553
CspI CGGWCCG 1 cut(s) 226
CviAII CATG 2 cut(s) 280, 538
CviJI RGCY 9 cut(s) 5, 87, 157, 242, 284, 395, 495, 531, 549
CviKI_1 RGCY 9 cut(s) 5, 87, 157, 242, 284, 395, 495, 531, 549
CviQI GTAC 2 cut(s) 307, 553
DdeI CTNAG 3 cut(s) 95, 272, 422
DpnI GATC 5 cut(s) 25, 54, 260, 367, 449
DpnII GATC 5 cut(s) 23, 52, 258, 365, 447
DriI GACNNNNNGTC 3 cut(s) 184, 187, 214
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 23, 538
Eam1105I GACNNNNNGTC 3 cut(s) 184, 187, 214
EarI CTCTTC 2 cut(s) 23, 538
EciI GGCGGA 3 cut(s) 93, 356, 418
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 2 cut(s) 159, 533
Eco47I GGWCC 4 cut(s) 226, 276, 465, 562
Eco53kI GAGCTC 1 cut(s) 157
Eco81I CCTNAGG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 2 cut(s) 159, 533
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 283, 541
FaiI YATR 2 cut(s) 281, 539
FaqI GGGAC 1 cut(s) 447
FatI CATG 2 cut(s) 279, 537
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 8 cut(s) 109, 317, 376, 379, 382, 385, 401, 444
FriOI GRGCYC 2 cut(s) 159, 533
Fsp4HI GCNGC 8 cut(s) 109, 317, 376, 379, 382, 385, 401, 444
FspBI CTAG 1 cut(s) 71
GluI GCNGC 8 cut(s) 109, 317, 376, 379, 382, 385, 401, 444
HaeIII GGCC 2 cut(s) 242, 284
HapII CCGG 4 cut(s) 90, 126, 489, 550
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 2 cut(s) 283, 541
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 8 cut(s) 93, 185, 215, 221, 231, 236, 263, 302
HpaII CCGG 4 cut(s) 90, 126, 489, 550
HphI GGTGA 2 cut(s) 70, 475
Hpy166II GTNNAC 3 cut(s) 192, 235, 562
Hpy188I TCNGA 5 cut(s) 154, 220, 226, 247, 475
Hpy188III TCNNGA 3 cut(s) 90, 206, 291
Hpy8I GTNNAC 3 cut(s) 192, 235, 562
Hpy99I CGWCG 4 cut(s) 53, 185, 512, 515
HpyCH4IV ACGT 4 cut(s) 255, 330, 480, 510
HpyCH4V TGCA 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 114, 248, 347, 381, 384
HpyF3I CTNAG 3 cut(s) 95, 272, 422
HpySE526I ACGT 4 cut(s) 255, 330, 480, 510
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 2 cut(s) 283, 541
Kpn2I TCCGGA 1 cut(s) 89
Kzo9I GATC 5 cut(s) 23, 52, 258, 365, 447
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 4 cut(s) 92, 324, 405, 492
Lsp1109I GCAGC 5 cut(s) 120, 303, 390, 393, 396
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 71
MaeII ACGT 4 cut(s) 255, 330, 480, 510
MaeIII GTNAC 2 cut(s) 34, 481
MalI GATC 5 cut(s) 25, 54, 260, 367, 449
MboI GATC 5 cut(s) 23, 52, 258, 365, 447
MboII GAAGA 2 cut(s) 40, 525
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 3 cut(s) 123, 159, 533
MlyI GAGTC 8 cut(s) 87, 194, 215, 224, 230, 240, 257, 296
MmeI TCCRAC 2 cut(s) 243, 498
MnlI CCTC 9 cut(s) 24, 182, 253, 337, 340, 478, 481, 496, 575
MroI TCCGGA 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 111, 197
MspI CCGG 4 cut(s) 90, 126, 489, 550
MspR9I CCNGG 2 cut(s) 338, 490
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 2 cut(s) 251, 356
MwoI GCNNNNNNNGC 6 cut(s) 84, 114, 248, 347, 381, 384
NciI CCSGG 1 cut(s) 490
NcoI CCATGG 1 cut(s) 279
NdeII GATC 5 cut(s) 23, 52, 258, 365, 447
NlaIII CATG 2 cut(s) 283, 541
NmeAIII GCCGAG 1 cut(s) 218
NmuCI GTSAC 2 cut(s) 34, 481
PciSI GCTCTTC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PflFI GACNNNGTC 3 cut(s) 230, 266, 479
PfoI TCCNGGA 1 cut(s) 488
PkrI GCNGC 8 cut(s) 110, 318, 377, 380, 383, 386, 402, 445
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 8 cut(s) 87, 193, 215, 223, 230, 239, 257, 296
PpsI GAGTC 8 cut(s) 87, 193, 215, 223, 230, 239, 257, 296
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspPI GGNCC 4 cut(s) 226, 276, 465, 562
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 3 cut(s) 230, 266, 479
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 2 cut(s) 308, 554
RsaNI GTAC 2 cut(s) 307, 553
Rsr2I CGGWCCG 1 cut(s) 226
RsrII CGGWCCG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 538
SatI GCNGC 8 cut(s) 109, 317, 376, 379, 382, 385, 401, 444
Sau3AI GATC 5 cut(s) 23, 52, 258, 365, 447
Sau96I GGNCC 4 cut(s) 226, 276, 465, 562
SchI GAGTC 8 cut(s) 87, 194, 215, 224, 230, 240, 257, 296
ScrFI CCNGG 2 cut(s) 338, 490
SduI GDGCHC 3 cut(s) 123, 159, 533
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 4 cut(s) 226, 276, 465, 562
SpeI ACTAGT 1 cut(s) 70
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 336, 488
StyI CCWWGG 1 cut(s) 279
TaiI ACGT 4 cut(s) 258, 333, 483, 513
TaqI TCGA 5 cut(s) 26, 48, 234, 261, 507
TaqII GACCGA 1 cut(s) 243
TauI GCSGC 3 cut(s) 378, 403, 446
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 34, 481
TseI GCWGC 5 cut(s) 108, 316, 378, 381, 384
Tsp45I GTSAC 2 cut(s) 34, 481
TspDTI ATGAA 1 cut(s) 493
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 103
Tth111I GACNNNGTC 3 cut(s) 230, 266, 479
VpaK11BI GGWCC 4 cut(s) 226, 276, 465, 562
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.