Rh6AG267000

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010118
Physical Location & Seq
Reverse (-)
45979339 .. 45981411
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG267000.1

Sequence Viewer

Length: 936 bp
ATGGCTGGTCTCGTCAGAACCAGAACCAAGAGAGTCACTTACCCGCTCGACGACAAGGTCAAGGCACGACTCGTCGGCCGGGAGAGCTACGTCAGCAGCGGCAGCGAGCACTCCGGCGGCGACGTCTCTCCTTGTCTGTCCGAGCTCGTTCACAGCTTTCTCGAGGAGGAGGAGGAGGAATCGTCGACCTCGTCGTCGGAGCCGCGGTCGCCGGACAACCGAGACTACGACTCGGACCGTGTCGACTCGGTCTCCGATCGTTCCGGCGCGGTGGAGTGCATTTTGAGATATTCGGCGAATGCGGACGCCTACGCCAAGGTGCTGCTCGCTGACGTGGCGGAGGCGGTGGAGGCGTTCTCGTGTCTGAGATCGGACAAGTCGGCCCTGCAGAGGAGCGTCATGTCGTTTCTGAGGGGGAAGGGGCACAATGCGGCGATCTGCAAGACCAAGTGGAGCTCCGCCGGCAGCATCACCGCCGGGCACTACGAGTTCATCGACGTGGTAGCCGCCAACTCGTCCGCCACGTGGCGGCAGCAGCAGCAGAGCAGCAGGTACTTCGTGGACGTGGACTTCGCCGCCGAGTTCGAGATCGCGCGGCCGTCGGGCCAGTACTCGCGGCTGTCGCAGTCGCTGCCACGTCACTTCGTCGGCGGCTCCGACGACCTGAAAAAGATCGTCCGGGTCATGTGCGACGCGGCGAAGAAGTCGCTGAGGAGCCGAGAGCTGTCAGTGCCACCGTGGCGGAAAAACCGTTACATGCAGAACAAGTGGTTCGGGCCGTACAAGCGGACGGTTAATCCGTTGCCGGAGAATCCGCTCACGCGGACCTCGCCTCTGTTCCCACAGGTGTCTGGCGCCAAATGCCTTTGGGTCGGGTTCGACGACGTCGTTTCTGAGACCAGCGCCGTCACCGGCCGCGTCTATATCCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

311

Amino Acids

34.56

Weight (kDa)

8.65

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 263 1.2e-69 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 193
AatII GACGTC 2 cut(s) 126, 888
Acc36I ACCTGC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 854
AccBSI CCGCTC 2 cut(s) 46, 817
AccI GTMKAC 2 cut(s) 185, 243
AccII CGCG 8 cut(s) 205, 269, 593, 595, 616, 695, 823, 918
AcoI YGGCCR 3 cut(s) 76, 596, 913
AcvI CACGTG 1 cut(s) 525
AcyI GRCGYC 4 cut(s) 123, 306, 855, 885
AfaI GTAC 4 cut(s) 554, 611, 782, 931
AfiI CCNNNNNNNGG 3 cut(s) 390, 525, 528
AjiI CACGTC 4 cut(s) 334, 499, 565, 638
AluBI AGCT 5 cut(s) 87, 145, 156, 456, 724
AluI AGCT 5 cut(s) 87, 145, 156, 456, 724
Alw21I GWGCWC 3 cut(s) 111, 147, 458
Alw26I GTCTC 5 cut(s) 14, 130, 216, 256, 890
AlwNI CAGNNNCTG 1 cut(s) 631
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 6 cut(s) 76, 381, 596, 604, 776, 913
ApeKI GCWGC 9 cut(s) 96, 102, 322, 465, 532, 535, 538, 546, 631
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspLEI GCGC 4 cut(s) 269, 595, 857, 905
AspS9I GGNCC 5 cut(s) 235, 382, 604, 776, 825
AsuC2I CCSGG 3 cut(s) 80, 478, 680
AsuHPI GGTGA 2 cut(s) 463, 901
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 235, 825
BaeGI GKGCMC 2 cut(s) 426, 483
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 2 cut(s) 147, 458
BauI CACGAG 1 cut(s) 358
BbrPI CACGTG 1 cut(s) 525
Bbv12I GWGCWC 3 cut(s) 111, 147, 458
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 9 cut(s) 108, 114, 309, 477, 544, 547, 550, 558, 618
BceAI ACGGC 3 cut(s) 583, 763, 890
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BcnI CCSGG 3 cut(s) 80, 478, 680
BcoDI GTCTC 5 cut(s) 14, 130, 216, 256, 890
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 858, 906
BfuAI ACCTGC 1 cut(s) 540
BglI GCCNNNNNGGC 1 cut(s) 739
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 3 cut(s) 80, 478, 680
Bme18I GGWCC 2 cut(s) 235, 825
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 4 cut(s) 334, 499, 565, 638
BmgT120I GGNCC 5 cut(s) 235, 382, 604, 776, 825
BmiI GGNNCC 4 cut(s) 201, 655, 716, 856
BmrFI CCNGG 3 cut(s) 80, 478, 680
BmsI GCATC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 341, 373
Bpu10I CCTNAGC 1 cut(s) 710
BpuMI CCSGG 3 cut(s) 80, 478, 680
BsaAI YACGTR 1 cut(s) 525
BsaHI GRCGYC 4 cut(s) 123, 306, 855, 885
BsaI GGTCTC 3 cut(s) 14, 256, 890
BsaJI CCNNGG 3 cut(s) 203, 315, 737
BsaXI ACNNNNNCTCC 6 cut(s) 167, 191, 197, 221, 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 525, 528
Bse118I RCCGGY 2 cut(s) 461, 911
Bse1I ACTGG 1 cut(s) 607
BseDI CCNNGG 3 cut(s) 203, 315, 737
BseLI CCNNNNNNNGG 3 cut(s) 390, 525, 528
BseMII CTCAG 4 cut(s) 356, 401, 701, 885
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 6 cut(s) 179, 182, 185, 188, 406, 727
BseSI GKGCMC 2 cut(s) 426, 483
BseX3I CGGCCG 3 cut(s) 76, 596, 913
BseXI GCAGC 9 cut(s) 108, 114, 309, 477, 544, 547, 550, 558, 618
Bsh1236I CGCG 8 cut(s) 205, 269, 593, 595, 616, 695, 823, 918
Bsh1285I CGRYCG 5 cut(s) 79, 209, 259, 599, 916
BshFI GGCC 6 cut(s) 78, 383, 598, 606, 778, 915
BshNI GGYRCC 1 cut(s) 854
BsiEI CGRYCG 5 cut(s) 79, 209, 259, 599, 916
BsiHKAI GWGCWC 3 cut(s) 111, 147, 458
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 679, 806, 912
BslI CCNNNNNNNGG 3 cut(s) 390, 525, 528
BsmAI GTCTC 5 cut(s) 14, 130, 216, 256, 890
BsmBI CGTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 6 cut(s) 78, 383, 598, 606, 778, 915
Bso31I GGTCTC 3 cut(s) 14, 256, 890
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 111, 147, 426, 458, 483
Bsp143I GATC 5 cut(s) 256, 368, 435, 588, 672
BspANI GGCC 6 cut(s) 78, 383, 598, 606, 778, 915
BspCNI CTCAG 4 cut(s) 357, 402, 702, 886
BspFNI CGCG 8 cut(s) 205, 269, 593, 595, 616, 695, 823, 918
BspLI GGNNCC 4 cut(s) 201, 655, 716, 856
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 3 cut(s) 14, 256, 890
BsrBI CCGCTC 2 cut(s) 46, 817
BsrFI RCCGGY 2 cut(s) 461, 911
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 2 cut(s) 461, 911
BssECI CCNNGG 3 cut(s) 203, 315, 737
BssMI GATC 5 cut(s) 256, 368, 435, 588, 672
BssNI GRCGYC 4 cut(s) 123, 306, 855, 885
BssSI CACGAG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 4 cut(s) 239, 738, 752, 793
BstACI GRCGYC 4 cut(s) 123, 306, 855, 885
BstAPI GCANNNNNTGC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 107, 327, 463
BstDEI CTNAG 5 cut(s) 365, 410, 710, 894, 933
BstDSI CCRYGG 2 cut(s) 203, 737
BstFNI CGCG 8 cut(s) 205, 269, 593, 595, 616, 695, 823, 918
BstH2I RGCGCY 2 cut(s) 858, 906
BstHHI GCGC 4 cut(s) 269, 595, 857, 905
BstKTI GATC 5 cut(s) 259, 371, 438, 591, 675
BstMAI GTCTC 5 cut(s) 14, 130, 216, 256, 890
BstMBI GATC 5 cut(s) 256, 368, 435, 588, 672
BstMCI CGRYCG 5 cut(s) 79, 209, 259, 599, 916
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 3 cut(s) 78, 476, 678
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 2 cut(s) 426, 483
BstUI CGCG 8 cut(s) 205, 269, 593, 595, 616, 695, 823, 918
BstV1I GCAGC 9 cut(s) 108, 114, 309, 477, 544, 547, 550, 558, 618
BstZI CGGCCG 3 cut(s) 76, 596, 913
BsuRI GGCC 6 cut(s) 78, 383, 598, 606, 778, 915
BtgI CCRYGG 2 cut(s) 203, 737
BtrI CACGTC 4 cut(s) 334, 499, 565, 638
BtsIMutI CAGTG 1 cut(s) 735
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 3 cut(s) 107, 327, 463
CaiI CAGNNNCTG 1 cut(s) 631
CfoI GCGC 4 cut(s) 269, 595, 857, 905
Cfr10I RCCGGY 2 cut(s) 461, 911
Cfr13I GGNCC 5 cut(s) 235, 382, 604, 776, 825
Cfr42I CCGCGG 1 cut(s) 206
CpoI CGGWCCG 1 cut(s) 235
CseI GACGC 4 cut(s) 314, 385, 701, 907
Csp6I GTAC 4 cut(s) 553, 610, 781, 930
CspI CGGWCCG 1 cut(s) 235
CviAII CATG 3 cut(s) 400, 685, 757
CviQI GTAC 4 cut(s) 553, 610, 781, 930
DdeI CTNAG 5 cut(s) 365, 410, 710, 894, 933
DinI GGCGCC 1 cut(s) 856
DpnI GATC 5 cut(s) 258, 370, 437, 590, 674
DpnII GATC 5 cut(s) 256, 368, 435, 588, 672
DrdI GACNNNNNNGTC 2 cut(s) 56, 193
DseDI GACNNNNNNGTC 2 cut(s) 56, 193
EaeI YGGCCR 3 cut(s) 76, 596, 913
EagI CGGCCG 3 cut(s) 76, 596, 913
EciI GGCGGA 4 cut(s) 353, 448, 508, 757
Ecl136II GAGCTC 2 cut(s) 145, 456
EclXI CGGCCG 3 cut(s) 76, 596, 913
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 147, 458
Eco31I GGTCTC 3 cut(s) 14, 256, 890
Eco47I GGWCC 2 cut(s) 235, 825
Eco52I CGGCCG 3 cut(s) 76, 596, 913
Eco53kI GAGCTC 2 cut(s) 145, 456
Eco72I CACGTG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 2 cut(s) 145, 456
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 2 cut(s) 147, 458
EgeI GGCGCC 1 cut(s) 856
EheI GGCGCC 1 cut(s) 856
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 3 cut(s) 403, 688, 760
FaiI YATR 4 cut(s) 401, 686, 758, 924
FatI CATG 3 cut(s) 399, 684, 756
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 2 cut(s) 185, 243
FriOI GRGCYC 2 cut(s) 147, 458
GlaI GCGC 4 cut(s) 268, 594, 856, 904
HaeII RGCGCY 2 cut(s) 858, 906
HaeIII GGCC 6 cut(s) 78, 383, 598, 606, 778, 915
HapII CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 679, 806, 912
HgaI GACGC 4 cut(s) 314, 385, 701, 907
HhaI GCGC 4 cut(s) 269, 595, 857, 905
Hin1I GRCGYC 4 cut(s) 123, 306, 855, 885
Hin1II CATG 3 cut(s) 403, 688, 760
Hin6I GCGC 4 cut(s) 267, 593, 855, 903
HinP1I GCGC 4 cut(s) 267, 593, 855, 903
HincII GTYRAC 2 cut(s) 186, 244
HindII GTYRAC 2 cut(s) 186, 244
HinfI GANTC 6 cut(s) 33, 69, 179, 230, 245, 811
HpaII CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 679, 806, 912
HphI GGTGA 2 cut(s) 463, 901
Hpy166II GTNNAC 5 cut(s) 151, 186, 244, 562, 568
Hpy188III TCNNGA 2 cut(s) 161, 586
Hpy8I GTNNAC 5 cut(s) 151, 186, 244, 562, 568
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 4 cut(s) 239, 738, 752, 793
HpyCH4IV ACGT 8 cut(s) 90, 123, 333, 498, 524, 564, 637, 885
HpyCH4V TGCA 4 cut(s) 279, 388, 441, 760
HpyF3I CTNAG 5 cut(s) 365, 410, 710, 894, 933
HpySE526I ACGT 8 cut(s) 90, 123, 333, 498, 524, 564, 637, 885
Hsp92I GRCGYC 4 cut(s) 123, 306, 855, 885
Hsp92II CATG 3 cut(s) 403, 688, 760
HspAI GCGC 4 cut(s) 267, 593, 855, 903
KasI GGCGCC 1 cut(s) 854
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
KspI CCGCGG 1 cut(s) 206
Kzo9I GATC 5 cut(s) 256, 368, 435, 588, 672
LmnI GCTCC 6 cut(s) 199, 393, 453, 461, 659, 714
Lsp1109I GCAGC 9 cut(s) 108, 114, 309, 477, 544, 547, 550, 558, 618
LweI GCATC 1 cut(s) 477
MaeII ACGT 8 cut(s) 90, 123, 333, 498, 524, 564, 637, 885
MaeIII GTNAC 4 cut(s) 34, 638, 752, 907
MalI GATC 5 cut(s) 258, 370, 437, 590, 674
MbiI CCGCTC 2 cut(s) 46, 817
MboI GATC 5 cut(s) 256, 368, 435, 588, 672
MboII GAAGA 1 cut(s) 712
MhlI GDGCHC 5 cut(s) 111, 147, 426, 458, 483
Mly113I GGCGCC 1 cut(s) 855
MlyI GAGTC 4 cut(s) 42, 63, 224, 239
MmeI TCCRAC 2 cut(s) 177, 681
MroNI GCCGGC 1 cut(s) 461
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 99, 205
MspI CCGG 9 cut(s) 79, 114, 212, 264, 462, 477, 679, 806, 912
MspR9I CCNGG 3 cut(s) 80, 478, 680
Mva1269I GAATGC 1 cut(s) 304
MvnI CGCG 8 cut(s) 205, 269, 593, 595, 616, 695, 823, 918
NaeI GCCGGC 1 cut(s) 463
NarI GGCGCC 1 cut(s) 855
NciI CCSGG 3 cut(s) 80, 478, 680
NdeII GATC 5 cut(s) 256, 368, 435, 588, 672
NgoMIV GCCGGC 1 cut(s) 461
NlaIII CATG 3 cut(s) 403, 688, 760
NlaIV GGNNCC 4 cut(s) 201, 655, 716, 856
NmeAIII GCCGAG 2 cut(s) 604, 743
NmuCI GTSAC 3 cut(s) 34, 638, 907
NspI RCATGY 1 cut(s) 760
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 8 cut(s) 188, 191, 492, 521, 654, 797, 879, 885
PctI GAATGC 1 cut(s) 304
PdiI GCCGGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 179, 811
PflFI GACNNNGTC 5 cut(s) 56, 190, 239, 248, 884
Ple19I CGATCG 1 cut(s) 259
PleI GAGTC 4 cut(s) 41, 63, 224, 239
PluTI GGCGCC 1 cut(s) 858
PmaCI CACGTG 1 cut(s) 525
PmlI CACGTG 1 cut(s) 525
PpsI GAGTC 4 cut(s) 41, 63, 224, 239
Ppu21I YACGTR 1 cut(s) 525
Psp124BI GAGCTC 2 cut(s) 147, 458
PspCI CACGTG 1 cut(s) 525
PspN4I GGNNCC 4 cut(s) 201, 655, 716, 856
PspPI GGNCC 5 cut(s) 235, 382, 604, 776, 825
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 631
PsyI GACNNNGTC 5 cut(s) 56, 190, 239, 248, 884
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 4 cut(s) 554, 611, 782, 931
RsaNI GTAC 4 cut(s) 553, 610, 781, 930
RseI CAYNNNNRTG 1 cut(s) 497
Rsr2I CGGWCCG 1 cut(s) 235
RsrII CGGWCCG 1 cut(s) 235
SacI GAGCTC 2 cut(s) 147, 458
SacII CCGCGG 1 cut(s) 206
SalI GTCGAC 2 cut(s) 184, 242
SaqAI TTAA 1 cut(s) 795
Sau3AI GATC 5 cut(s) 256, 368, 435, 588, 672
Sau96I GGNCC 5 cut(s) 235, 382, 604, 776, 825
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 4 cut(s) 42, 63, 224, 239
ScrFI CCNGG 3 cut(s) 80, 478, 680
SduI GDGCHC 5 cut(s) 111, 147, 426, 458, 483
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 386
SfoI GGCGCC 1 cut(s) 856
Sfr274I CTCGAG 1 cut(s) 161
Sfr303I CCGCGG 1 cut(s) 206
SgrBI CCGCGG 1 cut(s) 206
SinI GGWCC 2 cut(s) 235, 825
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SspDI GGCGCC 1 cut(s) 854
SstI GAGCTC 2 cut(s) 147, 458
StyD4I CCNGG 3 cut(s) 78, 476, 678
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 4 cut(s) 239, 738, 752, 793
TaiI ACGT 8 cut(s) 93, 126, 336, 501, 527, 567, 640, 888
TaqI TCGA 7 cut(s) 48, 162, 185, 243, 495, 585, 879
TaqII GACCGA 1 cut(s) 238
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 2 cut(s) 179, 811
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 3 cut(s) 34, 638, 907
TseI GCWGC 9 cut(s) 96, 102, 322, 465, 532, 535, 538, 546, 631
Tsp45I GTSAC 3 cut(s) 34, 638, 907
TspDTI ATGAA 1 cut(s) 481
TspGWI ACGGA 2 cut(s) 789, 917
TspRI CASTG 1 cut(s) 735
Tth111I GACNNNGTC 5 cut(s) 56, 190, 239, 248, 884
VpaK11BI GGWCC 2 cut(s) 235, 825
XceI RCATGY 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 185, 243
ZraI GACGTC 2 cut(s) 124, 886
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.