MD05G1165600.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010118
Physical Location & Seq
Reverse (-)
29421697 .. 29422629
933 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1165600.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGCTGGTTTTGTTAGAACCAGATCGAAGAGGGTCACTTACCCGCTCGACGATCGGGTGAAAGCGCGACTAGTCGGCGGATACAGCTCCGGATTCAGTGATGTCAGCAGCGGAAGCGAGCACTCCGGCGACTACAACTCCCCCTGCCTCTCCGAGCTCGTCCACCGCTTCCTCCAAGACGACGAGTCGTCCACCGCTGGTTTTCCCGACAACGAGTCCGACTCGGACCGAGTCGACTCGGCCTCCGACGCGGACGCGATCGACTCCGTCCTTAGGTCCGTGGCCGTTTCCGGAAATGCGGACTCGTACCTGAAGCTGCTCCGTTCTCACGTCTCCCAGGCGGAGGAGGCGTTCGCGTGTTTGAGATCCAACGGCGGCGGCAGCAGCAAGTCGGCTCTGCGGCGGAGCGTGATGTCGTTTCTGAGGGGATTGGGACACAATGCGGCGATCTGCAAGACGAAATGGACCTCCTCCGGCTACATCACCTCCGGGAGCTACGAGTTCATCGACGTCGTTCCTGTCCAATCGGGCTCCTCCATGTGGCAGAGCCGGTACTTCGTGGACCTCGACTTCGCCGCCCAGTTCGAAATCGCTCGGCCGTCGAGCCAGTACTCGCGGCTGCTGCAACTTCTGCCCAGAAACTTCGTTGGCAGCTCGGAGGACCTGAAGCGTATCGTTCGGGTCACGTGCGACGCGGCAAAGAGATCGTTGAAGAGCACAGATCTCTCCGTGCCTCCGTGGCGGAAGAACCGTTATGTGCAGAACAAGTGGTTCGGTCCGTACAAACGGACCGTCAATCCATTGACGGAGAGAACCTTCTCGACAGACTCGGCCATTTTTGCTCCAGTGTCTGGCGCCAAATGCCGCTGTGTTGGGTTTGACGACGCGGTTTCCGACTCCACCGTGAACGGCCGGCTCTATGTGCGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

311

Amino Acids

34.08

Weight (kDa)

8.98

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 52 - 263 1.5e-64 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 854
AccB7I CCANNNNNTGG 1 cut(s) 851
AccBSI CCGCTC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 234
AccII CGCG 7 cut(s) 67, 251, 257, 356, 616, 695, 887
AccIII TCCGGA 2 cut(s) 89, 290
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 4 cut(s) 282, 596, 831, 910
AcuI CTGAAG 2 cut(s) 332, 686
AcvI CACGTG 1 cut(s) 687
AcyI GRCGYC 2 cut(s) 510, 855
AfaI GTAC 5 cut(s) 308, 554, 611, 782, 928
AfiI CCNNNNNNNGG 4 cut(s) 273, 343, 540, 851
AgsI TTSAA 1 cut(s) 712
AhdI GACNNNNNGTC 3 cut(s) 184, 187, 214
AhlI ACTAGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 336
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 5 cut(s) 87, 157, 316, 495, 654
AluI AGCT 5 cut(s) 87, 157, 316, 495, 654
Alw21I GWGCWC 3 cut(s) 123, 159, 719
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 851
Aor13HI TCCGGA 2 cut(s) 89, 290
AoxI GGCC 5 cut(s) 240, 282, 596, 831, 910
ApeKI GCWGC 7 cut(s) 108, 316, 381, 384, 619, 622, 651
ArsI GACNNNNNNTTYG 4 cut(s) 554, 586, 777, 809
AspLEI GCGC 2 cut(s) 67, 857
AspS9I GGNCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 70, 475
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
AxyI CCTNAGG 1 cut(s) 272
BanI GGYRCC 1 cut(s) 854
BanII GRGCYC 2 cut(s) 159, 533
BbrPI CACGTG 1 cut(s) 687
Bbv12I GWGCWC 3 cut(s) 123, 159, 719
BbvI GCAGC 7 cut(s) 120, 303, 393, 396, 606, 609, 663
BceAI ACGGC 4 cut(s) 269, 388, 583, 925
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BciT130I CCWGG 1 cut(s) 338
BciVI GTATCC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 337
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 858
BfuI GTATCC 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 739
BglII AGATCT 1 cut(s) 721
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 2 cut(s) 338, 490
Bme18I GGWCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
BmeRI GACNNNNNGTC 3 cut(s) 184, 187, 214
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
BmiI GGNNCC 2 cut(s) 532, 856
BmrFI CCNGG 2 cut(s) 338, 490
BmrI ACTGGG 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 574
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 828
Bpu14I TTCGAA 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 490
BsaAI YACGTR 1 cut(s) 687
BsaHI GRCGYC 2 cut(s) 510, 855
BsaJI CCNNGG 3 cut(s) 279, 336, 737
BsaWI WCCGGW 2 cut(s) 89, 290
BsaXI ACNNNNNCTCC 8 cut(s) 122, 152, 227, 257, 335, 365, 470, 500
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 343, 540, 851
Bse118I RCCGGY 2 cut(s) 549, 912
Bse1I ACTGG 3 cut(s) 580, 607, 845
Bse21I CCTNAGG 1 cut(s) 272
BseAI TCCGGA 2 cut(s) 89, 290
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 3 cut(s) 279, 336, 737
BseLI CCNNNNNNNGG 4 cut(s) 273, 343, 540, 851
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 3 cut(s) 580, 607, 845
BseRI GAGGAG 3 cut(s) 359, 460, 523
BseX3I CGGCCG 2 cut(s) 596, 910
BseXI GCAGC 7 cut(s) 120, 303, 393, 396, 606, 609, 663
BsgI GTGCAG 1 cut(s) 779
Bsh1236I CGCG 7 cut(s) 67, 251, 257, 356, 616, 695, 887
Bsh1285I CGRYCG 4 cut(s) 55, 261, 599, 913
BshFI GGCC 5 cut(s) 242, 284, 598, 833, 912
BshNI GGYRCC 1 cut(s) 854
BsiEI CGRYCG 4 cut(s) 55, 261, 599, 913
BsiHKAI GWGCWC 3 cut(s) 123, 159, 719
BsiSI CCGG 7 cut(s) 90, 126, 291, 474, 489, 550, 913
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 4 cut(s) 273, 343, 540, 851
BsmAI GTCTC 1 cut(s) 337
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 5 cut(s) 242, 284, 598, 833, 912
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 4 cut(s) 123, 159, 533, 719
Bsp13I TCCGGA 2 cut(s) 89, 290
Bsp143I GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
BspANI GGCC 5 cut(s) 242, 284, 598, 833, 912
BspCNI CTCAG 1 cut(s) 414
BspEI TCCGGA 2 cut(s) 89, 290
BspFNI CGCG 7 cut(s) 67, 251, 257, 356, 616, 695, 887
BspLI GGNNCC 2 cut(s) 532, 856
BspPI GGATC 1 cut(s) 360
BspQI GCTCTTC 1 cut(s) 707
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 1 cut(s) 854
BsrBI CCGCTC 1 cut(s) 46
BsrFI RCCGGY 2 cut(s) 549, 912
BsrI ACTGG 3 cut(s) 580, 607, 845
BssAI RCCGGY 2 cut(s) 549, 912
BssECI CCNNGG 3 cut(s) 279, 336, 737
BssMI GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
BssNI GRCGYC 2 cut(s) 510, 855
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 752, 793, 904
Bst6I CTCTTC 2 cut(s) 23, 707
BstACI GRCGYC 2 cut(s) 510, 855
BstAPI GCANNNNNTGC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 687
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 119, 914
BstDEI CTNAG 2 cut(s) 272, 422
BstDSI CCRYGG 2 cut(s) 279, 737
BstFNI CGCG 7 cut(s) 67, 251, 257, 356, 616, 695, 887
BstH2I RGCGCY 1 cut(s) 858
BstHHI GCGC 2 cut(s) 67, 857
BstKTI GATC 7 cut(s) 26, 55, 261, 368, 450, 707, 724
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
BstMCI CGRYCG 4 cut(s) 55, 261, 599, 913
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 336, 488
BstUI CGCG 7 cut(s) 67, 251, 257, 356, 616, 695, 887
BstV1I GCAGC 7 cut(s) 120, 303, 393, 396, 606, 609, 663
BstX2I RGATCY 2 cut(s) 365, 721
BstYI RGATCY 2 cut(s) 365, 721
BstZI CGGCCG 2 cut(s) 596, 910
Bsu36I CCTNAGG 1 cut(s) 272
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 5 cut(s) 242, 284, 598, 833, 912
BtgI CCRYGG 2 cut(s) 279, 737
BtrI CACGTC 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 103, 852
Cac8I GCNNGC 2 cut(s) 119, 914
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 2 cut(s) 67, 857
Cfr10I RCCGGY 2 cut(s) 549, 912
Cfr13I GGNCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
CpoI CGGWCCG 3 cut(s) 226, 776, 789
CseI GACGC 4 cut(s) 257, 263, 701, 893
Csp6I GTAC 5 cut(s) 307, 553, 610, 781, 927
CspI CGGWCCG 3 cut(s) 226, 776, 789
CviAII CATG 1 cut(s) 538
CviQI GTAC 5 cut(s) 307, 553, 610, 781, 927
DdeI CTNAG 2 cut(s) 272, 422
DinI GGCGCC 1 cut(s) 856
DpnI GATC 7 cut(s) 25, 54, 260, 367, 449, 706, 723
DpnII GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
DriI GACNNNNNGTC 3 cut(s) 184, 187, 214
EaeI YGGCCR 4 cut(s) 282, 596, 831, 910
EagI CGGCCG 2 cut(s) 596, 910
Eam1104I CTCTTC 2 cut(s) 23, 707
Eam1105I GACNNNNNGTC 3 cut(s) 184, 187, 214
EarI CTCTTC 2 cut(s) 23, 707
EciI GGCGGA 4 cut(s) 93, 356, 418, 757
Ecl136II GAGCTC 1 cut(s) 157
EclXI CGGCCG 2 cut(s) 596, 910
Eco24I GRGCYC 2 cut(s) 159, 533
Eco47I GGWCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
Eco52I CGGCCG 2 cut(s) 596, 910
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 332, 686
Eco72I CACGTG 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 336
EcoT38I GRGCYC 2 cut(s) 159, 533
EgeI GGCGCC 1 cut(s) 856
EheI GGCGCC 1 cut(s) 856
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 1 cut(s) 541
FaiI YATR 3 cut(s) 539, 756, 921
FaqI GGGAC 1 cut(s) 447
FatI CATG 1 cut(s) 537
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 234
FriOI GRGCYC 2 cut(s) 159, 533
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 66, 856
GsuI CTGGAG 1 cut(s) 828
HaeII RGCGCY 1 cut(s) 858
HaeIII GGCC 5 cut(s) 242, 284, 598, 833, 912
HapII CCGG 7 cut(s) 90, 126, 291, 474, 489, 550, 913
HgaI GACGC 4 cut(s) 257, 263, 701, 893
HhaI GCGC 2 cut(s) 67, 857
Hin1I GRCGYC 2 cut(s) 510, 855
Hin1II CATG 1 cut(s) 541
Hin6I GCGC 2 cut(s) 65, 855
HinP1I GCGC 2 cut(s) 65, 855
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HpaII CCGG 7 cut(s) 90, 126, 291, 474, 489, 550, 913
HphI GGTGA 2 cut(s) 70, 475
Hpy166II GTNNAC 5 cut(s) 163, 192, 235, 562, 907
Hpy188I TCNGA 7 cut(s) 154, 220, 226, 247, 423, 658, 895
Hpy188III TCNNGA 4 cut(s) 90, 206, 291, 820
Hpy8I GTNNAC 5 cut(s) 163, 192, 235, 562, 907
Hpy99I CGWCG 8 cut(s) 53, 185, 251, 512, 515, 604, 695, 887
HpyAV CCTTC 1 cut(s) 826
HpyCH4III ACNGT 3 cut(s) 752, 793, 904
HpyCH4IV ACGT 3 cut(s) 330, 510, 686
HpyCH4V TGCA 3 cut(s) 453, 625, 760
HpyF3I CTNAG 2 cut(s) 272, 422
HpySE526I ACGT 3 cut(s) 330, 510, 686
Hsp92I GRCGYC 2 cut(s) 510, 855
Hsp92II CATG 1 cut(s) 541
HspAI GCGC 2 cut(s) 65, 855
KasI GGCGCC 1 cut(s) 854
Kpn2I TCCGGA 2 cut(s) 89, 290
KroI GCCGGC 1 cut(s) 912
KroNI GCCGGC 1 cut(s) 914
Kzo9I GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 6 cut(s) 92, 324, 405, 492, 536, 847
Lsp1109I GCAGC 7 cut(s) 120, 303, 393, 396, 606, 609, 663
MaeI CTAG 1 cut(s) 71
MaeII ACGT 3 cut(s) 330, 510, 686
MaeIII GTNAC 2 cut(s) 34, 682
MalI GATC 7 cut(s) 25, 54, 260, 367, 449, 706, 723
MbiI CCGCTC 1 cut(s) 46
MboI GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
MboII GAAGA 3 cut(s) 40, 724, 757
MflI RGATCY 2 cut(s) 365, 721
MhlI GDGCHC 4 cut(s) 123, 159, 533, 719
Mly113I GGCGCC 1 cut(s) 855
MlyI GAGTC 9 cut(s) 194, 215, 224, 230, 240, 257, 296, 821, 890
MmeI TCCRAC 4 cut(s) 243, 270, 393, 918
MroI TCCGGA 2 cut(s) 89, 290
MroNI GCCGGC 1 cut(s) 912
MseI TTAA 1 cut(s) 931
MspA1I CMGCKG 3 cut(s) 111, 197, 867
MspI CCGG 7 cut(s) 90, 126, 291, 474, 489, 550, 913
MspR9I CCNGG 2 cut(s) 338, 490
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 7 cut(s) 67, 251, 257, 356, 616, 695, 887
NaeI GCCGGC 1 cut(s) 914
NarI GGCGCC 1 cut(s) 855
NciI CCSGG 1 cut(s) 490
NdeII GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
NgoMIV GCCGGC 1 cut(s) 912
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 2 cut(s) 532, 856
NmeAIII GCCGAG 3 cut(s) 218, 574, 809
NmuCI GTSAC 2 cut(s) 34, 682
NspV TTCGAA 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 707
PcsI WCGNNNNNNNCGW 3 cut(s) 504, 564, 891
PdiI GCCGGC 1 cut(s) 914
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 2 cut(s) 230, 266
PflMI CCANNNNNTGG 1 cut(s) 851
PfoI TCCNGGA 1 cut(s) 488
Ple19I CGATCG 2 cut(s) 55, 261
PleI GAGTC 9 cut(s) 193, 215, 223, 230, 239, 257, 296, 821, 890
PluTI GGCGCC 1 cut(s) 858
PmaCI CACGTG 1 cut(s) 687
PmlI CACGTG 1 cut(s) 687
PpsI GAGTC 9 cut(s) 193, 215, 223, 230, 239, 257, 296, 821, 890
Ppu21I YACGTR 1 cut(s) 687
PpuMI RGGWCCY 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 336
PspCI CACGTG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 532, 856
PspPI GGNCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
PspPPI RGGWCCY 1 cut(s) 661
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 2 cut(s) 365, 721
PsyI GACNNNGTC 2 cut(s) 230, 266
PvuI CGATCG 2 cut(s) 55, 261
RsaI GTAC 5 cut(s) 308, 554, 611, 782, 928
RsaNI GTAC 5 cut(s) 307, 553, 610, 781, 927
Rsr2I CGGWCCG 3 cut(s) 226, 776, 789
RsrII CGGWCCG 3 cut(s) 226, 776, 789
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 707
SaqAI TTAA 1 cut(s) 931
Sau3AI GATC 7 cut(s) 23, 52, 258, 365, 447, 704, 721
Sau96I GGNCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 9 cut(s) 194, 215, 224, 230, 240, 257, 296, 821, 890
ScrFI CCNGG 2 cut(s) 338, 490
SduI GDGCHC 4 cut(s) 123, 159, 533, 719
SfoI GGCGCC 1 cut(s) 856
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
SpeI ACTAGT 1 cut(s) 70
SspDI GGCGCC 1 cut(s) 854
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 336, 488
TaaI ACNGT 3 cut(s) 752, 793, 904
TaiI ACGT 3 cut(s) 333, 513, 689
TaqI TCGA 9 cut(s) 26, 48, 234, 261, 507, 567, 585, 602, 821
TaqII GACCGA 2 cut(s) 243, 764
TatI WGTACW 1 cut(s) 609
TauI GCSGC 8 cut(s) 378, 381, 403, 446, 578, 619, 698, 867
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 931
Tru9I TTAA 1 cut(s) 931
TscAI CASTG 2 cut(s) 103, 852
TseFI GTSAC 2 cut(s) 34, 682
TseI GCWGC 7 cut(s) 108, 316, 381, 384, 619, 622, 651
Tsp45I GTSAC 2 cut(s) 34, 682
TspDTI ATGAA 1 cut(s) 493
TspGWI ACGGA 8 cut(s) 256, 268, 311, 718, 726, 768, 802, 821
TspRI CASTG 2 cut(s) 103, 852
Tth111I GACNNNGTC 2 cut(s) 230, 266
Van91I CCANNNNNTGG 1 cut(s) 851
VpaK11BI GGWCC 7 cut(s) 226, 276, 465, 562, 661, 776, 789
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 511
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.