Prupe.8G193800_v2.0.a1

PDDEXK-like family of unknown function

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
18699644 .. 18701047
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G193800.1

Sequence Viewer

Length: 921 bp
ATGATGATTATTAAAACCAGAACAAAGAGAGTCACTTACCCTCTCGACGACAAGGTCAGGGCACGCCTCGTCGGCGGCTACAGCTCCGAGCTCAGCATCTACGACGTCAGCAGCGGAAGCGAGCATTCCGGCGACGGCGACTCGCCCTGCCTCTCCGAGCTCGTCCACGATTTCCTCCAGGACGACTCGTCCGAGACTCGGTTTCCGGACAACGAGACTGACTCGGACCGAGTCGACTCGGTCTCCGACGCGAAAGCGATGGACTCTATTCTCAGATCCGCGGCTGTTAGCGGAAATGAGGACTCGTTTGCGAAGCTGCTCCGCTCTCACGTTTCCGAGGCGGTGGAGGCGTTCTCGTGCCTGAGATCCGGCAACAAGTCAGCTCTGCGACGGAGCGTGATGTCGTTTTTGAGAGCCCGGGGGCACAATGCGGCGATCTGCAAGACCAATTGGAGCTCCTCCGGCAACATCACCGCCGGGAGCTACGAGTTCATCGACGTGGTTTGCGCCCAATCGAGCTCCCCCATGTGGCAGAGCCAGTACTTCGTGGACCTCGACTTCGCCGCCCAGTTCGAAATCGCTAGGCCGACGAGCCAGTACTCGCGGCTGTTGCAGCTACTGCCGAGAGACTTCGTCGGCAGCTCGGAGGACCTGAAGCGAATCGTCCGAGTCATGAGCGACGCCGTCAAGAGGTCGCTGAGAAGCAGAGAGCTCTCCGTGCCTCCGTGGAGGAAAAACCGTTACATGCAGAACAAGTGGTTCGGTCCGTACAAACGGACAGTTAACCCGTTGACGGAGAAATCGTTTTCAATATCCTCCACCGTTTTCGCTCCGGTCTCTGGTGCGAAATGCCGTCGGGTTGGGTTCGACGACGCCGTTTCTGACCCCAGCGTCAACGGCCGTCTTTACGTCCGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

34.15

Weight (kDa)

8.91

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 890
AatII GACGTC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 234
AccII CGCG 3 cut(s) 251, 281, 604
AccIII TCCGGA 1 cut(s) 205
AclWI GGATC 2 cut(s) 270, 360
AcoI YGGCCR 1 cut(s) 898
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 3 cut(s) 105, 681, 873
AfaI GTAC 4 cut(s) 542, 599, 770, 916
AfiI CCNNNNNNNGG 5 cut(s) 198, 528, 690, 793, 839
AgsI TTSAA 1 cut(s) 810
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 1 cut(s) 499
AjnI CCWGG 1 cut(s) 177
Alw21I GWGCWC 5 cut(s) 93, 162, 458, 521, 714
Alw26I GTCTC 5 cut(s) 188, 209, 247, 621, 841
AlwI GGATC 2 cut(s) 270, 360
AlwNI CAGNNNCTG 1 cut(s) 619
Ama87I CYCGRG 1 cut(s) 417
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 584, 898
ApeKI GCWGC 4 cut(s) 111, 316, 613, 639
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 4 cut(s) 226, 550, 649, 764
AsuC2I CCSGG 3 cut(s) 418, 419, 478
AsuHPI GGTGA 1 cut(s) 463
AsuII TTCGAA 1 cut(s) 573
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 4 cut(s) 226, 550, 649, 764
BaeGI GKGCMC 2 cut(s) 64, 426
BanII GRGCYC 6 cut(s) 93, 162, 418, 458, 521, 714
BauI CACGAG 1 cut(s) 355
Bbv12I GWGCWC 5 cut(s) 93, 162, 458, 521, 714
BbvI GCAGC 4 cut(s) 123, 303, 625, 651
BccI CCATC 1 cut(s) 253
BceAI ACGGC 6 cut(s) 151, 668, 837, 860, 885, 913
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 3 cut(s) 418, 419, 478
BcoDI GTCTC 5 cut(s) 188, 209, 247, 621, 841
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 9 cut(s) 76, 112, 282, 317, 432, 564, 605, 614, 640
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 9 cut(s) 77, 113, 283, 318, 433, 565, 606, 615, 641
BmcAI AGTACT 2 cut(s) 542, 599
Bme1390I CCNGG 4 cut(s) 179, 418, 419, 478
Bme18I GGWCC 4 cut(s) 226, 550, 649, 764
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 417
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 4 cut(s) 226, 550, 649, 764
BmrFI CCNGG 4 cut(s) 179, 418, 419, 478
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 562
BplI GAGNNNNNCTC 4 cut(s) 206, 238, 338, 370
BpmI CTGGAG 1 cut(s) 161
Bpu1102I GCTNAGC 1 cut(s) 92
Bpu14I TTCGAA 1 cut(s) 573
BpuMI CCSGG 3 cut(s) 418, 419, 478
BsaAI YACGTR 1 cut(s) 918
BsaHI GRCGYC 3 cut(s) 105, 681, 873
BsaI GGTCTC 2 cut(s) 247, 841
BsaJI CCNNGG 5 cut(s) 279, 336, 417, 418, 725
BsaWI WCCGGW 2 cut(s) 205, 832
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 788, 818
Bsc4I CCNNNNNNNGG 5 cut(s) 198, 528, 690, 793, 839
Bse1I ACTGG 3 cut(s) 538, 568, 595
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 5 cut(s) 279, 336, 417, 418, 725
BseLI CCNNNNNNNGG 5 cut(s) 198, 528, 690, 793, 839
BseMII CTCAG 4 cut(s) 106, 286, 353, 689
BseNI ACTGG 3 cut(s) 538, 568, 595
BseRI GAGGAG 1 cut(s) 448
BseSI GKGCMC 2 cut(s) 64, 426
BseX3I CGGCCG 1 cut(s) 898
BseXI GCAGC 4 cut(s) 123, 303, 625, 651
BseYI CCCAGC 1 cut(s) 887
Bsh1236I CGCG 3 cut(s) 251, 281, 604
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 2 cut(s) 586, 900
BsiEI CGRYCG 1 cut(s) 901
BsiHKAI GWGCWC 5 cut(s) 93, 162, 458, 521, 714
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 7 cut(s) 129, 206, 369, 418, 462, 477, 833
BsiWI CGTACG 1 cut(s) 914
BslI CCNNNNNNNGG 5 cut(s) 198, 528, 690, 793, 839
BsmAI GTCTC 5 cut(s) 188, 209, 247, 621, 841
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 2 cut(s) 586, 900
Bso31I GGTCTC 2 cut(s) 247, 841
BsoBI CYCGRG 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 8 cut(s) 64, 93, 162, 418, 426, 458, 521, 714
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 275, 365, 435
Bsp1720I GCTNAGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 586, 900
BspCNI CTCAG 4 cut(s) 105, 285, 354, 690
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 3 cut(s) 251, 281, 604
BspHI TCATGA 1 cut(s) 672
BspPI GGATC 2 cut(s) 270, 360
BspT104I TTCGAA 1 cut(s) 573
BspTNI GGTCTC 2 cut(s) 247, 841
BsrBI CCGCTC 1 cut(s) 324
BsrI ACTGG 3 cut(s) 538, 568, 595
BssECI CCNNGG 5 cut(s) 279, 336, 417, 418, 725
BssMI GATC 3 cut(s) 275, 365, 435
BssNI GRCGYC 3 cut(s) 105, 681, 873
BssSI CACGAG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 740, 781, 823
BstACI GRCGYC 3 cut(s) 105, 681, 873
BstAPI GCANNNNNTGC 1 cut(s) 619
BstBAI YACGTR 1 cut(s) 918
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 64, 122
BstDEI CTNAG 4 cut(s) 92, 272, 362, 698
BstDSI CCRYGG 2 cut(s) 279, 725
BstFNI CGCG 3 cut(s) 251, 281, 604
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 3 cut(s) 278, 368, 438
BstMAI GTCTC 5 cut(s) 188, 209, 247, 621, 841
BstMBI GATC 3 cut(s) 275, 365, 435
BstMCI CGRYCG 1 cut(s) 901
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 4 cut(s) 177, 416, 417, 476
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 2 cut(s) 64, 426
BstSNI TACGTA 1 cut(s) 918
BstUI CGCG 3 cut(s) 251, 281, 604
BstV1I GCAGC 4 cut(s) 123, 303, 625, 651
BstX2I RGATCY 2 cut(s) 275, 365
BstYI RGATCY 2 cut(s) 275, 365
BstZI CGGCCG 1 cut(s) 898
BsuRI GGCC 2 cut(s) 586, 900
BtgI CCRYGG 2 cut(s) 279, 725
BtgZI GCGATG 1 cut(s) 272
BtrI CACGTC 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 64, 122
CaiI CAGNNNCTG 1 cut(s) 619
CciI TCATGA 1 cut(s) 672
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 4 cut(s) 226, 550, 649, 764
Cfr42I CCGCGG 1 cut(s) 282
Cfr9I CCCGGG 1 cut(s) 417
CpoI CGGWCCG 2 cut(s) 226, 764
CseI GACGC 4 cut(s) 257, 689, 880, 881
Csp6I GTAC 4 cut(s) 541, 598, 769, 915
CspI CGGWCCG 2 cut(s) 226, 764
CviAII CATG 3 cut(s) 526, 673, 745
CviQI GTAC 4 cut(s) 541, 598, 769, 915
DdeI CTNAG 4 cut(s) 92, 272, 362, 698
DpnI GATC 3 cut(s) 277, 367, 437
DpnII GATC 3 cut(s) 275, 365, 435
DrdI GACNNNNNNGTC 2 cut(s) 53, 890
DriI GACNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 2 cut(s) 53, 890
EaeI YGGCCR 1 cut(s) 898
EagI CGGCCG 1 cut(s) 898
Eam1105I GACNNNNNGTC 1 cut(s) 187
Ecl136II GAGCTC 5 cut(s) 91, 160, 456, 519, 712
EclXI CGGCCG 1 cut(s) 898
Eco105I TACGTA 1 cut(s) 918
Eco24I GRGCYC 6 cut(s) 93, 162, 418, 458, 521, 714
Eco31I GGTCTC 2 cut(s) 247, 841
Eco47I GGWCC 4 cut(s) 226, 550, 649, 764
Eco52I CGGCCG 1 cut(s) 898
Eco53kI GAGCTC 5 cut(s) 91, 160, 456, 519, 712
Eco57I CTGAAG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 417
EcoICRI GAGCTC 5 cut(s) 91, 160, 456, 519, 712
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 6 cut(s) 93, 162, 418, 458, 521, 714
FaeI CATG 3 cut(s) 529, 676, 748
FaiI YATR 3 cut(s) 527, 674, 746
FatI CATG 3 cut(s) 525, 672, 744
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 9 cut(s) 76, 112, 282, 317, 432, 564, 605, 614, 640
FriOI GRGCYC 6 cut(s) 93, 162, 418, 458, 521, 714
Fsp4HI GCNGC 9 cut(s) 76, 112, 282, 317, 432, 564, 605, 614, 640
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 508
GluI GCNGC 9 cut(s) 76, 112, 282, 317, 432, 564, 605, 614, 640
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 2 cut(s) 586, 900
HapII CCGG 7 cut(s) 129, 206, 369, 418, 462, 477, 833
HgaI GACGC 4 cut(s) 257, 689, 880, 881
HhaI GCGC 1 cut(s) 509
Hin1I GRCGYC 3 cut(s) 105, 681, 873
Hin1II CATG 3 cut(s) 529, 676, 748
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HincII GTYRAC 4 cut(s) 235, 784, 792, 895
HindII GTYRAC 4 cut(s) 235, 784, 792, 895
HpaI GTTAAC 1 cut(s) 784
HpaII CCGG 7 cut(s) 129, 206, 369, 418, 462, 477, 833
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 6 cut(s) 166, 235, 550, 784, 792, 895
Hpy188III TCNNGA 4 cut(s) 44, 206, 673, 688
Hpy8I GTNNAC 6 cut(s) 166, 235, 550, 784, 792, 895
HpyCH4III ACNGT 3 cut(s) 740, 781, 823
HpyCH4IV ACGT 5 cut(s) 105, 330, 498, 909, 917
HpyCH4V TGCA 3 cut(s) 441, 613, 748
HpyF3I CTNAG 4 cut(s) 92, 272, 362, 698
HpySE526I ACGT 5 cut(s) 105, 330, 498, 909, 917
Hsp92I GRCGYC 3 cut(s) 105, 681, 873
Hsp92II CATG 3 cut(s) 529, 676, 748
HspAI GCGC 1 cut(s) 507
Kpn2I TCCGGA 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 784
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 3 cut(s) 275, 365, 435
LmnI GCTCC 8 cut(s) 89, 324, 393, 453, 461, 480, 524, 835
Lsp1109I GCAGC 4 cut(s) 123, 303, 625, 651
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 582
MaeII ACGT 5 cut(s) 105, 330, 498, 909, 917
MaeIII GTNAC 2 cut(s) 31, 740
MalI GATC 3 cut(s) 277, 367, 437
MbiI CCGCTC 1 cut(s) 324
MboI GATC 3 cut(s) 275, 365, 435
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 275, 365
MhlI GDGCHC 8 cut(s) 64, 93, 162, 418, 426, 458, 521, 714
MluCI AATT 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 270
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 12, 783
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 2 cut(s) 114, 281
MspI CCGG 7 cut(s) 129, 206, 369, 418, 462, 477, 833
MspR9I CCNGG 4 cut(s) 179, 418, 419, 478
MunI CAATTG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 3 cut(s) 251, 281, 604
NciI CCSGG 3 cut(s) 418, 419, 478
NdeII GATC 3 cut(s) 275, 365, 435
NlaIII CATG 3 cut(s) 529, 676, 748
NmeAIII GCCGAG 1 cut(s) 648
NmuCI GTSAC 1 cut(s) 31
NspI RCATGY 1 cut(s) 748
NspV TTCGAA 1 cut(s) 573
PagI TCATGA 1 cut(s) 672
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 492, 552, 800, 873
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 660
Pfl23II CGTACG 1 cut(s) 914
PflFI GACNNNGTC 5 cut(s) 53, 230, 239, 632, 683
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 9 cut(s) 77, 113, 283, 318, 433, 565, 606, 615, 641
Ppu21I YACGTR 1 cut(s) 918
PpuMI RGGWCCY 1 cut(s) 649
Psp124BI GAGCTC 5 cut(s) 93, 162, 458, 521, 714
Psp5II RGGWCCY 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 1 cut(s) 177
PspLI CGTACG 1 cut(s) 914
PspPI GGNCC 4 cut(s) 226, 550, 649, 764
PspPPI RGGWCCY 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 2 cut(s) 275, 365
PsyI GACNNNGTC 5 cut(s) 53, 230, 239, 632, 683
RsaI GTAC 4 cut(s) 542, 599, 770, 916
RsaNI GTAC 4 cut(s) 541, 598, 769, 915
RseI CAYNNNNRTG 1 cut(s) 497
Rsr2I CGGWCCG 2 cut(s) 226, 764
RsrII CGGWCCG 2 cut(s) 226, 764
SacI GAGCTC 5 cut(s) 93, 162, 458, 521, 714
SacII CCGCGG 1 cut(s) 282
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 12, 783
SatI GCNGC 9 cut(s) 76, 112, 282, 317, 432, 564, 605, 614, 640
Sau3AI GATC 3 cut(s) 275, 365, 435
Sau96I GGNCC 4 cut(s) 226, 550, 649, 764
ScaI AGTACT 2 cut(s) 542, 599
ScrFI CCNGG 4 cut(s) 179, 418, 419, 478
SduI GDGCHC 8 cut(s) 64, 93, 162, 418, 426, 458, 521, 714
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 79
Sfr303I CCGCGG 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 573
SgrBI CCGCGG 1 cut(s) 282
SinI GGWCC 4 cut(s) 226, 550, 649, 764
SmaI CCCGGG 1 cut(s) 419
SmiMI CAYNNNNRTG 1 cut(s) 497
SnaBI TACGTA 1 cut(s) 918
Sse9I AATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 5 cut(s) 93, 162, 458, 521, 714
StyD4I CCNGG 4 cut(s) 177, 416, 417, 476
TaaI ACNGT 3 cut(s) 740, 781, 823
TaiI ACGT 5 cut(s) 108, 333, 501, 912, 920
TaqI TCGA 7 cut(s) 45, 234, 495, 515, 555, 573, 867
TaqII GACCGA 3 cut(s) 229, 243, 752
TasI AATT 1 cut(s) 448
TatI WGTACW 2 cut(s) 540, 597
TauI GCSGC 5 cut(s) 78, 284, 434, 566, 607
TfiI GAWTC 1 cut(s) 660
Tru1I TTAA 2 cut(s) 12, 783
Tru9I TTAA 2 cut(s) 12, 783
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 111, 316, 613, 639
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 481
TspGWI ACGGA 7 cut(s) 406, 706, 714, 756, 790, 809, 902
TspMI CCCGGG 1 cut(s) 417
Tth111I GACNNNGTC 5 cut(s) 53, 230, 239, 632, 683
VpaK11BI GGWCC 4 cut(s) 226, 550, 649, 764
XceI RCATGY 1 cut(s) 748
XmaI CCCGGG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 106
ZrmI AGTACT 2 cut(s) 542, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.