MD07G1287900.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0010118
Physical Location & Seq
Reverse (-)
34915137 .. 34917735
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1287900.v1.1.491

Sequence Viewer

Length: 273 bp
ATGACTGGTTTTGTTAGAACGAGATTGAAACGGGTCACTTACCCGCTCGACGACTGGGTGAAAGATAGACTCGTAGGAGGATACAGCTCCGGACCTAGTGACGCCAGCAAAGGAAGCGAGCACTCCGGCGACTACGACTCCCCTTGCCTCTCCGAGCTCGTCCGCGGCTGGGTTTCACGACAACCAGTCGAATCGGGTATTGGGCCGTGGAAGGGACTTTTTAGTTTCTTCTTTTTCTTCTGTAGGTGTATGGGTAAGGAATGGACTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

91

Amino Acids

10.24

Weight (kDa)

8.53

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 89
AciI CCGC 3 cut(s) 44, 163, 165
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 169, 212
AgsI TTSAA 1 cut(s) 28
AhdI GACNNNNNGTC 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 87, 157
AluI AGCT 2 cut(s) 87, 157
Alw21I GWGCWC 2 cut(s) 123, 159
Aor13HI TCCGGA 1 cut(s) 89
AoxI GGCC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 92, 203
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 123, 159
BceAI ACGGC 1 cut(s) 190
BciVI GTATCC 1 cut(s) 74
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 241
BfuI GTATCC 1 cut(s) 74
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 92
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 92, 203
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 163, 206
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 212
Bse1I ACTGG 3 cut(s) 10, 59, 185
BseAI TCCGGA 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 163, 206
BseLI CCNNNNNNNGG 2 cut(s) 169, 212
BseNI ACTGG 3 cut(s) 10, 59, 185
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 205
BsiHKAI GWGCWC 2 cut(s) 123, 159
BsiSI CCGG 2 cut(s) 90, 126
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 169, 212
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 123, 159
Bsp13I TCCGGA 1 cut(s) 89
BspACI CCGC 3 cut(s) 44, 163, 165
BspANI GGCC 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 89
BspFNI CGCG 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 46
BsrI ACTGG 3 cut(s) 10, 59, 185
BssECI CCNNGG 2 cut(s) 163, 206
BssNI GRCGYC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 106, 119
BstDSI CCRYGG 2 cut(s) 163, 206
BstFNI CGCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 2 cut(s) 163, 206
Cac8I GCNNGC 2 cut(s) 106, 119
Cfr13I GGNCC 2 cut(s) 92, 203
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 1 cut(s) 110
CviJI RGCY 4 cut(s) 87, 157, 168, 205
CviKI_1 RGCY 4 cut(s) 87, 157, 168, 205
DriI GACNNNNNGTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 159
FaiI YATR 1 cut(s) 251
FaqI GGGAC 1 cut(s) 228
FauI CCCGC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 90, 126
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
HinfI GANTC 3 cut(s) 69, 137, 191
HpaII CCGG 2 cut(s) 90, 126
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 90, 177
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 102
Kpn2I TCCGGA 1 cut(s) 89
KspI CCGCGG 1 cut(s) 166
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 40, 103, 118, 139, 154, 198
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 34, 98
MbiI CCGCTC 1 cut(s) 46
MboII GAAGA 2 cut(s) 220, 229
MhlI GDGCHC 2 cut(s) 123, 159
MlyI GAGTC 2 cut(s) 63, 131
MnlI CCTC 2 cut(s) 71, 158
MroI TCCGGA 1 cut(s) 89
MseI TTAA 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 2 cut(s) 90, 126
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 114
NmuCI GTSAC 2 cut(s) 34, 98
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 2 cut(s) 63, 131
PpsI GAGTC 2 cut(s) 63, 131
Psp124BI GAGCTC 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 92, 203
SacI GAGCTC 1 cut(s) 159
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 92, 203
SchI GAGTC 2 cut(s) 63, 131
SduI GDGCHC 2 cut(s) 123, 159
SetI ASST 4 cut(s) 89, 97, 159, 248
SfcI CTRYAG 1 cut(s) 241
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 92
SsiI CCGC 3 cut(s) 44, 163, 165
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 1 cut(s) 159
TaqI TCGA 2 cut(s) 48, 189
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseFI GTSAC 2 cut(s) 34, 98
Tsp45I GTSAC 2 cut(s) 34, 98
VpaK11BI GGWCC 1 cut(s) 92
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.