AT3G07360

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2354640 .. 2356884
2245 bp
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UTR
Exon/CDS
Intron
AT3G07360.9

Sequence Viewer

Length: 1383 bp
ATGGCGAAGACCGGTGTTTTCGATTCGGATCCGACGGCGATTGCTAAAGCCAAGGAACTGAAGCGTGAGATGAAGAAGTTGCTGATTAAGATCGATGACGAAGATGATTTGGGTGTTCAGACGATTGATCAGTTACAGGACGCTTTGTCTGCGTTGAGAGAAGCGACGATGAGGAAGATGGCGAAATCTTCCTCGTTAGAGATGCTCGAGACTGTGTCTTGTCCTGAGGAGTTTCGTTGTCCTCTCTCTAATGAGCTTATGAGGGATCCCGTCGTTTTGGCTTCTGGTCAGACATACGACAAGTTATTTATCCAGAAATGGTTGAGCTCAGGGAACAGAACATGTCCCAAGACTCAGCAAGTTCTGCCTCACACGGCTTTAACACCTAATCTCTTAATCCGTGAAATGATCTCGAAATGGTGCAAGAAGAACGGGCTTGAGACGAAGAGCCAATATCATCCCAACCTTGTAAATGAAGATGAAACTGTGACAAGATCAGATCGTGAGATTTTCAATTCCTTGCTCTGTAAAGTCTCTTCTTCGAACCTTCAAGATCAAAAATCAGCTGCCAAGGAGCTAAGACTTCTGACCAGGAAAGGCACTGAGTTCCGAGCTCTTTTTGGCGAATCTCCGGATGAGATCACCAGGTTGGTGAATCCCTTGTTACACGGGTCAAACCCAGATGAGAAGCTTCAAGAAGATGTGGTTACAACATTGTTGAACATATCAATACATGATGACAGCAACAAGAAGCTCGTCTGCGAAAATCCTAATGTGATTCCTCTCCTTATCGATGCATTGAGGCGTGGAACAGTCGCCACGAGAAGCAATGCAGCTGCAGCGATCTTCACTCTGTCAGCTCTCGATTCAAACAAAGTACTTATAGGGAAGTCCGGAATCCTGAAACCGCTTATCGATCTCCTAGAAGAAGGGAATCCATTAGCTATCAAAGACGTAGCTGCAGCGATCTTCACTCTTTGTATAGCCCATGAGAACAGGAGTAGAGCTGTGAGAGACGGAGCTGTTAGGGTTTTAGGTAAGAAAATCTCGAATGGGTTGTACGTTGATGAGCTTTTAGCTATATTGGCAATGCTTGTTACTCACTGGAAGGCTGTGGAGGAATTGGGTGAGCTCGGTGGGGTTTCATGGTTGCTGAAGATAACTCGAGAGAGCGAGTGCAAGCGAAACAAAGAGAATGCGATAGTGATACTGCATACTATATGTTTCAGCGACAGGACAAAGTGGAAGGAGATCAAAGAAGAGGAGAATGCTCATGGAACGATAACAAAGCTTTCGCGTGAAGGAACTTCAAGGGCGCAGAGGAAAGCAAACGGGATATTGGACAGACTGAGAAAAGCTATGAATCTCACTCATACAGCCTGA

Protein Analysis

460

Amino Acids

51.28

Weight (kDa)

8.58

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 39 - 210 9.7e-11 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1297
AccIII TCCGGA 2 cut(s) 631, 893
AciI CCGC 1 cut(s) 908
AclWI GGATC 4 cut(s) 23, 36, 260, 273
AcuI CTGAAG 2 cut(s) 80, 1175
AfaI GTAC 2 cut(s) 879, 1061
AflIII ACRYGT 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 6 cut(s) 514, 551, 695, 721, 870, 1311
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 2 cut(s) 590, 644
Alw21I GWGCWC 3 cut(s) 329, 616, 1134
Alw26I GTCTC 4 cut(s) 203, 434, 538, 1008
AlwI GGATC 4 cut(s) 23, 36, 260, 273
Ama87I CYCGRG 2 cut(s) 206, 1164
Aor13HI TCCGGA 2 cut(s) 631, 893
ApeKI GCWGC 6 cut(s) 566, 833, 836, 839, 959, 962
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 1 cut(s) 1318
AsuHPI GGTGA 3 cut(s) 634, 664, 1139
AsuII TTCGAA 1 cut(s) 542
AvaI CYCGRG 2 cut(s) 206, 1164
AxyI CCTNAGG 1 cut(s) 225
BamHI GGATCC 2 cut(s) 28, 265
BanII GRGCYC 3 cut(s) 329, 616, 1134
BarI GAAGNNNNNNTAC 2 cut(s) 520, 552
BauI CACGAG 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 3 cut(s) 329, 616, 1134
BbvI GCAGC 6 cut(s) 553, 823, 845, 851, 946, 974
BccI CCATC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 51, 390
BciT130I CCWGG 2 cut(s) 592, 646
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 4 cut(s) 203, 434, 538, 1008
BfaI CTAG 1 cut(s) 923
BfmI CTRYAG 2 cut(s) 837, 960
BisI GCNGC 6 cut(s) 567, 834, 837, 840, 960, 963
BlsI GCNGC 6 cut(s) 568, 835, 838, 841, 961, 964
BmcAI AGTACT 1 cut(s) 879
Bme1390I CCNGG 2 cut(s) 592, 646
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 2 cut(s) 206, 1164
BmiI GGNNCC 2 cut(s) 30, 267
BmrFI CCNGG 2 cut(s) 592, 646
BmsI GCATC 2 cut(s) 192, 784
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 3 cut(s) 93, 792, 915
BsaBI GATNNNNATC 2 cut(s) 27, 89
BsaJI CCNNGG 2 cut(s) 51, 570
BsaWI WCCGGW 3 cut(s) 11, 631, 893
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 1109
Bse21I CCTNAGG 1 cut(s) 225
Bse3DI GCAATG 2 cut(s) 835, 1095
Bse8I GATNNNNATC 2 cut(s) 27, 89
BseAI TCCGGA 2 cut(s) 631, 893
BseBI CCWGG 2 cut(s) 592, 646
BseCI ATCGAT 3 cut(s) 93, 792, 915
BseDI CCNNGG 2 cut(s) 51, 570
BseGI GGATG 2 cut(s) 457, 640
BseJI GATNNNNATC 2 cut(s) 27, 89
BseMI GCAATG 2 cut(s) 835, 1095
BseMII CTCAG 5 cut(s) 216, 342, 368, 594, 1340
BseNI ACTGG 1 cut(s) 1109
BseRI GAGGAG 2 cut(s) 242, 1277
BseXI GCAGC 6 cut(s) 553, 823, 845, 851, 946, 974
Bsh1236I CGCG 1 cut(s) 1297
BshTI ACCGGT 1 cut(s) 11
BshVI ATCGAT 3 cut(s) 93, 792, 915
BsiHKAI GWGCWC 3 cut(s) 329, 616, 1134
BsiHKCI CYCGRG 2 cut(s) 206, 1164
BsiSI CCGG 3 cut(s) 12, 632, 894
BslFI GGGAC 1 cut(s) 330
BsmAI GTCTC 4 cut(s) 203, 434, 538, 1008
BsmBI CGTCTC 2 cut(s) 434, 1008
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 2 cut(s) 1201, 1273
BsoBI CYCGRG 2 cut(s) 206, 1164
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 3 cut(s) 329, 616, 1134
Bsp13I TCCGGA 2 cut(s) 631, 893
BspACI CCGC 1 cut(s) 908
BspCNI CTCAG 5 cut(s) 217, 341, 367, 595, 1341
BspDI ATCGAT 3 cut(s) 93, 792, 915
BspEI TCCGGA 2 cut(s) 631, 893
BspFNI CGCG 1 cut(s) 1297
BspLI GGNNCC 2 cut(s) 30, 267
BspMAI CTGCAG 2 cut(s) 841, 964
BspPI GGATC 4 cut(s) 23, 36, 260, 273
BspQI GCTCTTC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 835, 1095
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 1109
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 51, 570
BssSI CACGAG 1 cut(s) 820
BssT1I CCWWGG 2 cut(s) 51, 570
Bst2BI CACGAG 1 cut(s) 820
Bst2UI CCWGG 2 cut(s) 592, 646
Bst4CI ACNGT 3 cut(s) 214, 487, 814
Bst6I CTCTTC 3 cut(s) 440, 541, 1254
BstAPI GCANNNNNTGC 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 1181
BstDEI CTNAG 6 cut(s) 225, 328, 354, 578, 603, 1349
BstF5I GGATG 2 cut(s) 457, 640
BstFNI CGCG 1 cut(s) 1297
BstHHI GCGC 1 cut(s) 1318
BstMAI GTCTC 4 cut(s) 203, 434, 538, 1008
BstMWI GCNNNNNNNGC 4 cut(s) 149, 364, 839, 1085
BstNI CCWGG 2 cut(s) 592, 646
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 590, 644
BstSFI CTRYAG 2 cut(s) 837, 960
BstUI CGCG 1 cut(s) 1297
BstV1I GCAGC 6 cut(s) 553, 823, 845, 851, 946, 974
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 28, 265
BstYI RGATCY 2 cut(s) 28, 265
Bsu15I ATCGAT 3 cut(s) 93, 792, 915
Bsu36I CCTNAGG 1 cut(s) 225
BsuTUI ATCGAT 3 cut(s) 93, 792, 915
BtsCI GGATG 2 cut(s) 457, 640
BtsIMutI CAGTG 2 cut(s) 600, 1102
Cac8I GCNNGC 1 cut(s) 1181
CfoI GCGC 1 cut(s) 1318
Cfr10I RCCGGY 1 cut(s) 11
ClaI ATCGAT 3 cut(s) 93, 792, 915
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 644
Csp6I GTAC 2 cut(s) 878, 1060
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 5 cut(s) 342, 734, 989, 1146, 1274
CviQI GTAC 2 cut(s) 878, 1060
DdeI CTNAG 6 cut(s) 225, 328, 354, 578, 603, 1349
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 440, 541, 1254
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 3 cut(s) 440, 541, 1254
Ecl136II GAGCTC 3 cut(s) 327, 614, 1132
Eco130I CCWWGG 2 cut(s) 51, 570
Eco24I GRGCYC 3 cut(s) 329, 616, 1134
Eco53kI GAGCTC 3 cut(s) 327, 614, 1132
Eco57I CTGAAG 2 cut(s) 80, 1175
Eco81I CCTNAGG 1 cut(s) 225
Eco88I CYCGRG 2 cut(s) 206, 1164
EcoICRI GAGCTC 3 cut(s) 327, 614, 1132
EcoRII CCWGG 2 cut(s) 590, 644
EcoT14I CCWWGG 2 cut(s) 51, 570
EcoT22I ATGCAT 1 cut(s) 799
EcoT38I GRGCYC 3 cut(s) 329, 616, 1134
ErhI CCWWGG 2 cut(s) 51, 570
Esp3I CGTCTC 2 cut(s) 434, 1008
FaeI CATG 5 cut(s) 345, 737, 992, 1149, 1277
FaqI GGGAC 1 cut(s) 330
FatI CATG 5 cut(s) 341, 733, 988, 1145, 1273
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 6 cut(s) 567, 834, 837, 840, 960, 963
FokI GGATG 2 cut(s) 444, 647
FriOI GRGCYC 3 cut(s) 329, 616, 1134
Fsp4HI GCNGC 6 cut(s) 567, 834, 837, 840, 960, 963
FspBI CTAG 1 cut(s) 923
GlaI GCGC 1 cut(s) 1317
GluI GCNGC 6 cut(s) 567, 834, 837, 840, 960, 963
HapII CCGG 3 cut(s) 12, 632, 894
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 1318
Hin1II CATG 5 cut(s) 345, 737, 992, 1149, 1277
Hin6I GCGC 1 cut(s) 1316
HinP1I GCGC 1 cut(s) 1316
HindIII AAGCTT 2 cut(s) 689, 1289
HinfI GANTC 9 cut(s) 23, 352, 626, 655, 778, 866, 897, 934, 1363
HpaII CCGG 3 cut(s) 12, 632, 894
HphI GGTGA 3 cut(s) 634, 664, 1139
Hpy188I TCNGA 7 cut(s) 28, 33, 120, 291, 499, 588, 611
Hpy99I CGWCG 3 cut(s) 37, 169, 275
HpyAV CCTTC 5 cut(s) 557, 923, 1102, 1240, 1295
HpyCH4III ACNGT 3 cut(s) 214, 487, 814
HpyCH4IV ACGT 2 cut(s) 954, 1062
HpyCH4V TGCA 7 cut(s) 423, 797, 833, 839, 962, 1179, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 364, 839, 1085
HpyF3I CTNAG 6 cut(s) 225, 328, 354, 578, 603, 1349
HpySE526I ACGT 2 cut(s) 954, 1062
Hsp92II CATG 5 cut(s) 345, 737, 992, 1149, 1277
HspAI GCGC 1 cut(s) 1316
Kpn2I TCCGGA 2 cut(s) 631, 893
Ksp22I TGATCA 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 574, 1019
Lsp1109I GCAGC 6 cut(s) 553, 823, 845, 851, 946, 974
LweI GCATC 2 cut(s) 192, 784
MabI ACCWGGT 1 cut(s) 644
MaeI CTAG 1 cut(s) 923
MaeII ACGT 2 cut(s) 954, 1062
MaeIII GTNAC 5 cut(s) 132, 487, 663, 706, 1096
MflI RGATCY 2 cut(s) 28, 265
MhlI GDGCHC 3 cut(s) 329, 616, 1134
MluCI AATT 2 cut(s) 514, 1121
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 799
MroI TCCGGA 2 cut(s) 631, 893
MseI TTAA 3 cut(s) 87, 380, 395
MspA1I CMGCKG 2 cut(s) 566, 836
MspI CCGG 3 cut(s) 12, 632, 894
MspR9I CCNGG 2 cut(s) 592, 646
Mva1269I GAATGC 2 cut(s) 1201, 1273
MvaI CCWGG 2 cut(s) 592, 646
MvnI CGCG 1 cut(s) 1297
MwoI GCNNNNNNNGC 4 cut(s) 149, 364, 839, 1085
NlaIII CATG 5 cut(s) 345, 737, 992, 1149, 1277
NlaIV GGNNCC 2 cut(s) 30, 267
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 1 cut(s) 345
NspV TTCGAA 1 cut(s) 542
PaeR7I CTCGAG 2 cut(s) 206, 1164
PciI ACATGT 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 440
PctI GAATGC 2 cut(s) 1201, 1273
PfeI GAWTC 8 cut(s) 23, 626, 655, 778, 866, 897, 934, 1363
PflFI GACNNNGTC 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 6 cut(s) 568, 835, 838, 841, 961, 964
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PscI ACATGT 1 cut(s) 341
Psp124BI GAGCTC 3 cut(s) 329, 616, 1134
Psp6I CCWGG 2 cut(s) 590, 644
PspGI CCWGG 2 cut(s) 590, 644
PspN4I GGNNCC 2 cut(s) 30, 267
PstI CTGCAG 2 cut(s) 841, 964
PsuI RGATCY 2 cut(s) 28, 265
PsyI GACNNNGTC 1 cut(s) 214
PvuII CAGCTG 2 cut(s) 566, 836
RsaI GTAC 2 cut(s) 879, 1061
RsaNI GTAC 2 cut(s) 878, 1060
SacI GAGCTC 3 cut(s) 329, 616, 1134
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 87, 380, 395
SatI GCNGC 6 cut(s) 567, 834, 837, 840, 960, 963
ScaI AGTACT 1 cut(s) 879
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 592, 646
SduI GDGCHC 3 cut(s) 329, 616, 1134
SexAI ACCWGGT 1 cut(s) 644
SfaNI GCATC 2 cut(s) 192, 784
SfcI CTRYAG 2 cut(s) 837, 960
Sfr274I CTCGAG 2 cut(s) 206, 1164
SfuI TTCGAA 1 cut(s) 542
SlaI CTCGAG 2 cut(s) 206, 1164
SmlI CTYRAG 3 cut(s) 206, 437, 1164
SmoI CTYRAG 3 cut(s) 206, 437, 1164
Sse9I AATT 2 cut(s) 514, 1121
SsiI CCGC 1 cut(s) 908
SspMI CTAG 1 cut(s) 923
SstI GAGCTC 3 cut(s) 329, 616, 1134
StyD4I CCNGG 2 cut(s) 590, 644
StyI CCWWGG 2 cut(s) 51, 570
TaaI ACNGT 3 cut(s) 214, 487, 814
TaiI ACGT 2 cut(s) 957, 1065
TasI AATT 2 cut(s) 514, 1121
TatI WGTACW 1 cut(s) 877
TfiI GAWTC 8 cut(s) 23, 626, 655, 778, 866, 897, 934, 1363
Tru1I TTAA 3 cut(s) 87, 380, 395
Tru9I TTAA 3 cut(s) 87, 380, 395
TscAI CASTG 2 cut(s) 607, 1109
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 6 cut(s) 566, 833, 836, 839, 959, 962
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 5 cut(s) 86, 489, 495, 1134, 1376
TspGWI ACGGA 2 cut(s) 389, 1032
TspRI CASTG 2 cut(s) 607, 1109
Tth111I GACNNNGTC 1 cut(s) 214
XceI RCATGY 1 cut(s) 345
XhoI CTCGAG 2 cut(s) 206, 1164
XspI CTAG 1 cut(s) 923
ZrmI AGTACT 1 cut(s) 879
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.