U-box domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ARM_PUB | PF25598 | 39 - 210 | 9.7e-11 | Plant U-box protein ARM repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1297 |
| AccIII | TCCGGA | 2 cut(s) | 631, 893 |
| AciI | CCGC | 1 cut(s) | 908 |
| AclWI | GGATC | 4 cut(s) | 23, 36, 260, 273 |
| AcuI | CTGAAG | 2 cut(s) | 80, 1175 |
| AfaI | GTAC | 2 cut(s) | 879, 1061 |
| AflIII | ACRYGT | 1 cut(s) | 341 |
| AgeI | ACCGGT | 1 cut(s) | 11 |
| AgsI | TTSAA | 6 cut(s) | 514, 551, 695, 721, 870, 1311 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 145 |
| AjnI | CCWGG | 2 cut(s) | 590, 644 |
| Alw21I | GWGCWC | 3 cut(s) | 329, 616, 1134 |
| Alw26I | GTCTC | 4 cut(s) | 203, 434, 538, 1008 |
| AlwI | GGATC | 4 cut(s) | 23, 36, 260, 273 |
| Ama87I | CYCGRG | 2 cut(s) | 206, 1164 |
| Aor13HI | TCCGGA | 2 cut(s) | 631, 893 |
| ApeKI | GCWGC | 6 cut(s) | 566, 833, 836, 839, 959, 962 |
| AsiGI | ACCGGT | 1 cut(s) | 11 |
| AspLEI | GCGC | 1 cut(s) | 1318 |
| AsuHPI | GGTGA | 3 cut(s) | 634, 664, 1139 |
| AsuII | TTCGAA | 1 cut(s) | 542 |
| AvaI | CYCGRG | 2 cut(s) | 206, 1164 |
| AxyI | CCTNAGG | 1 cut(s) | 225 |
| BamHI | GGATCC | 2 cut(s) | 28, 265 |
| BanII | GRGCYC | 3 cut(s) | 329, 616, 1134 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 520, 552 |
| BauI | CACGAG | 1 cut(s) | 820 |
| BbsI | GAAGAC | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 3 cut(s) | 329, 616, 1134 |
| BbvI | GCAGC | 6 cut(s) | 553, 823, 845, 851, 946, 974 |
| BccI | CCATC | 1 cut(s) | 172 |
| BceAI | ACGGC | 2 cut(s) | 51, 390 |
| BciT130I | CCWGG | 2 cut(s) | 592, 646 |
| BclI | TGATCA | 1 cut(s) | 127 |
| BcoDI | GTCTC | 4 cut(s) | 203, 434, 538, 1008 |
| BfaI | CTAG | 1 cut(s) | 923 |
| BfmI | CTRYAG | 2 cut(s) | 837, 960 |
| BisI | GCNGC | 6 cut(s) | 567, 834, 837, 840, 960, 963 |
| BlsI | GCNGC | 6 cut(s) | 568, 835, 838, 841, 961, 964 |
| BmcAI | AGTACT | 1 cut(s) | 879 |
| Bme1390I | CCNGG | 2 cut(s) | 592, 646 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 145 |
| BmeT110I | CYCGRG | 2 cut(s) | 206, 1164 |
| BmiI | GGNNCC | 2 cut(s) | 30, 267 |
| BmrFI | CCNGG | 2 cut(s) | 592, 646 |
| BmsI | GCATC | 2 cut(s) | 192, 784 |
| BpiI | GAAGAC | 1 cut(s) | 14 |
| Bpu10I | CCTNAGC | 1 cut(s) | 328 |
| Bpu14I | TTCGAA | 1 cut(s) | 542 |
| BpuEI | CTTGAG | 1 cut(s) | 458 |
| Bsa29I | ATCGAT | 3 cut(s) | 93, 792, 915 |
| BsaBI | GATNNNNATC | 2 cut(s) | 27, 89 |
| BsaJI | CCNNGG | 2 cut(s) | 51, 570 |
| BsaWI | WCCGGW | 3 cut(s) | 11, 631, 893 |
| Bse118I | RCCGGY | 1 cut(s) | 11 |
| Bse1I | ACTGG | 1 cut(s) | 1109 |
| Bse21I | CCTNAGG | 1 cut(s) | 225 |
| Bse3DI | GCAATG | 2 cut(s) | 835, 1095 |
| Bse8I | GATNNNNATC | 2 cut(s) | 27, 89 |
| BseAI | TCCGGA | 2 cut(s) | 631, 893 |
| BseBI | CCWGG | 2 cut(s) | 592, 646 |
| BseCI | ATCGAT | 3 cut(s) | 93, 792, 915 |
| BseDI | CCNNGG | 2 cut(s) | 51, 570 |
| BseGI | GGATG | 2 cut(s) | 457, 640 |
| BseJI | GATNNNNATC | 2 cut(s) | 27, 89 |
| BseMI | GCAATG | 2 cut(s) | 835, 1095 |
| BseMII | CTCAG | 5 cut(s) | 216, 342, 368, 594, 1340 |
| BseNI | ACTGG | 1 cut(s) | 1109 |
| BseRI | GAGGAG | 2 cut(s) | 242, 1277 |
| BseXI | GCAGC | 6 cut(s) | 553, 823, 845, 851, 946, 974 |
| Bsh1236I | CGCG | 1 cut(s) | 1297 |
| BshTI | ACCGGT | 1 cut(s) | 11 |
| BshVI | ATCGAT | 3 cut(s) | 93, 792, 915 |
| BsiHKAI | GWGCWC | 3 cut(s) | 329, 616, 1134 |
| BsiHKCI | CYCGRG | 2 cut(s) | 206, 1164 |
| BsiSI | CCGG | 3 cut(s) | 12, 632, 894 |
| BslFI | GGGAC | 1 cut(s) | 330 |
| BsmAI | GTCTC | 4 cut(s) | 203, 434, 538, 1008 |
| BsmBI | CGTCTC | 2 cut(s) | 434, 1008 |
| BsmFI | GGGAC | 1 cut(s) | 330 |
| BsmI | GAATGC | 2 cut(s) | 1201, 1273 |
| BsoBI | CYCGRG | 2 cut(s) | 206, 1164 |
| Bsp119I | TTCGAA | 1 cut(s) | 542 |
| Bsp1286I | GDGCHC | 3 cut(s) | 329, 616, 1134 |
| Bsp13I | TCCGGA | 2 cut(s) | 631, 893 |
| BspACI | CCGC | 1 cut(s) | 908 |
| BspCNI | CTCAG | 5 cut(s) | 217, 341, 367, 595, 1341 |
| BspDI | ATCGAT | 3 cut(s) | 93, 792, 915 |
| BspEI | TCCGGA | 2 cut(s) | 631, 893 |
| BspFNI | CGCG | 1 cut(s) | 1297 |
| BspLI | GGNNCC | 2 cut(s) | 30, 267 |
| BspMAI | CTGCAG | 2 cut(s) | 841, 964 |
| BspPI | GGATC | 4 cut(s) | 23, 36, 260, 273 |
| BspQI | GCTCTTC | 1 cut(s) | 440 |
| BspT104I | TTCGAA | 1 cut(s) | 542 |
| BsrDI | GCAATG | 2 cut(s) | 835, 1095 |
| BsrFI | RCCGGY | 1 cut(s) | 11 |
| BsrI | ACTGG | 1 cut(s) | 1109 |
| BssAI | RCCGGY | 1 cut(s) | 11 |
| BssECI | CCNNGG | 2 cut(s) | 51, 570 |
| BssSI | CACGAG | 1 cut(s) | 820 |
| BssT1I | CCWWGG | 2 cut(s) | 51, 570 |
| Bst2BI | CACGAG | 1 cut(s) | 820 |
| Bst2UI | CCWGG | 2 cut(s) | 592, 646 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 487, 814 |
| Bst6I | CTCTTC | 3 cut(s) | 440, 541, 1254 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 364 |
| BstBI | TTCGAA | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 1 cut(s) | 1181 |
| BstDEI | CTNAG | 6 cut(s) | 225, 328, 354, 578, 603, 1349 |
| BstF5I | GGATG | 2 cut(s) | 457, 640 |
| BstFNI | CGCG | 1 cut(s) | 1297 |
| BstHHI | GCGC | 1 cut(s) | 1318 |
| BstMAI | GTCTC | 4 cut(s) | 203, 434, 538, 1008 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 149, 364, 839, 1085 |
| BstNI | CCWGG | 2 cut(s) | 592, 646 |
| BstNSI | RCATGY | 1 cut(s) | 345 |
| BstSCI | CCNGG | 2 cut(s) | 590, 644 |
| BstSFI | CTRYAG | 2 cut(s) | 837, 960 |
| BstUI | CGCG | 1 cut(s) | 1297 |
| BstV1I | GCAGC | 6 cut(s) | 553, 823, 845, 851, 946, 974 |
| BstV2I | GAAGAC | 1 cut(s) | 14 |
| BstX2I | RGATCY | 2 cut(s) | 28, 265 |
| BstYI | RGATCY | 2 cut(s) | 28, 265 |
| Bsu15I | ATCGAT | 3 cut(s) | 93, 792, 915 |
| Bsu36I | CCTNAGG | 1 cut(s) | 225 |
| BsuTUI | ATCGAT | 3 cut(s) | 93, 792, 915 |
| BtsCI | GGATG | 2 cut(s) | 457, 640 |
| BtsIMutI | CAGTG | 2 cut(s) | 600, 1102 |
| Cac8I | GCNNGC | 1 cut(s) | 1181 |
| CfoI | GCGC | 1 cut(s) | 1318 |
| Cfr10I | RCCGGY | 1 cut(s) | 11 |
| ClaI | ATCGAT | 3 cut(s) | 93, 792, 915 |
| CseI | GACGC | 1 cut(s) | 149 |
| CsiI | ACCWGGT | 1 cut(s) | 644 |
| Csp6I | GTAC | 2 cut(s) | 878, 1060 |
| CspAI | ACCGGT | 1 cut(s) | 11 |
| CviAII | CATG | 5 cut(s) | 342, 734, 989, 1146, 1274 |
| CviQI | GTAC | 2 cut(s) | 878, 1060 |
| DdeI | CTNAG | 6 cut(s) | 225, 328, 354, 578, 603, 1349 |
| DriI | GACNNNNNGTC | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 3 cut(s) | 440, 541, 1254 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 145 |
| EarI | CTCTTC | 3 cut(s) | 440, 541, 1254 |
| Ecl136II | GAGCTC | 3 cut(s) | 327, 614, 1132 |
| Eco130I | CCWWGG | 2 cut(s) | 51, 570 |
| Eco24I | GRGCYC | 3 cut(s) | 329, 616, 1134 |
| Eco53kI | GAGCTC | 3 cut(s) | 327, 614, 1132 |
| Eco57I | CTGAAG | 2 cut(s) | 80, 1175 |
| Eco81I | CCTNAGG | 1 cut(s) | 225 |
| Eco88I | CYCGRG | 2 cut(s) | 206, 1164 |
| EcoICRI | GAGCTC | 3 cut(s) | 327, 614, 1132 |
| EcoRII | CCWGG | 2 cut(s) | 590, 644 |
| EcoT14I | CCWWGG | 2 cut(s) | 51, 570 |
| EcoT22I | ATGCAT | 1 cut(s) | 799 |
| EcoT38I | GRGCYC | 3 cut(s) | 329, 616, 1134 |
| ErhI | CCWWGG | 2 cut(s) | 51, 570 |
| Esp3I | CGTCTC | 2 cut(s) | 434, 1008 |
| FaeI | CATG | 5 cut(s) | 345, 737, 992, 1149, 1277 |
| FaqI | GGGAC | 1 cut(s) | 330 |
| FatI | CATG | 5 cut(s) | 341, 733, 988, 1145, 1273 |
| FbaI | TGATCA | 1 cut(s) | 127 |
| Fnu4HI | GCNGC | 6 cut(s) | 567, 834, 837, 840, 960, 963 |
| FokI | GGATG | 2 cut(s) | 444, 647 |
| FriOI | GRGCYC | 3 cut(s) | 329, 616, 1134 |
| Fsp4HI | GCNGC | 6 cut(s) | 567, 834, 837, 840, 960, 963 |
| FspBI | CTAG | 1 cut(s) | 923 |
| GlaI | GCGC | 1 cut(s) | 1317 |
| GluI | GCNGC | 6 cut(s) | 567, 834, 837, 840, 960, 963 |
| HapII | CCGG | 3 cut(s) | 12, 632, 894 |
| HgaI | GACGC | 1 cut(s) | 149 |
| HhaI | GCGC | 1 cut(s) | 1318 |
| Hin1II | CATG | 5 cut(s) | 345, 737, 992, 1149, 1277 |
| Hin6I | GCGC | 1 cut(s) | 1316 |
| HinP1I | GCGC | 1 cut(s) | 1316 |
| HindIII | AAGCTT | 2 cut(s) | 689, 1289 |
| HinfI | GANTC | 9 cut(s) | 23, 352, 626, 655, 778, 866, 897, 934, 1363 |
| HpaII | CCGG | 3 cut(s) | 12, 632, 894 |
| HphI | GGTGA | 3 cut(s) | 634, 664, 1139 |
| Hpy188I | TCNGA | 7 cut(s) | 28, 33, 120, 291, 499, 588, 611 |
| Hpy99I | CGWCG | 3 cut(s) | 37, 169, 275 |
| HpyAV | CCTTC | 5 cut(s) | 557, 923, 1102, 1240, 1295 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 487, 814 |
| HpyCH4IV | ACGT | 2 cut(s) | 954, 1062 |
| HpyCH4V | TGCA | 7 cut(s) | 423, 797, 833, 839, 962, 1179, 1213 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 149, 364, 839, 1085 |
| HpyF3I | CTNAG | 6 cut(s) | 225, 328, 354, 578, 603, 1349 |
| HpySE526I | ACGT | 2 cut(s) | 954, 1062 |
| Hsp92II | CATG | 5 cut(s) | 345, 737, 992, 1149, 1277 |
| HspAI | GCGC | 1 cut(s) | 1316 |
| Kpn2I | TCCGGA | 2 cut(s) | 631, 893 |
| Ksp22I | TGATCA | 1 cut(s) | 127 |
| LguI | GCTCTTC | 1 cut(s) | 440 |
| LmnI | GCTCC | 2 cut(s) | 574, 1019 |
| Lsp1109I | GCAGC | 6 cut(s) | 553, 823, 845, 851, 946, 974 |
| LweI | GCATC | 2 cut(s) | 192, 784 |
| MabI | ACCWGGT | 1 cut(s) | 644 |
| MaeI | CTAG | 1 cut(s) | 923 |
| MaeII | ACGT | 2 cut(s) | 954, 1062 |
| MaeIII | GTNAC | 5 cut(s) | 132, 487, 663, 706, 1096 |
| MflI | RGATCY | 2 cut(s) | 28, 265 |
| MhlI | GDGCHC | 3 cut(s) | 329, 616, 1134 |
| MluCI | AATT | 2 cut(s) | 514, 1121 |
| MlyI | GAGTC | 1 cut(s) | 346 |
| MmeI | TCCRAC | 1 cut(s) | 56 |
| Mph1103I | ATGCAT | 1 cut(s) | 799 |
| MroI | TCCGGA | 2 cut(s) | 631, 893 |
| MseI | TTAA | 3 cut(s) | 87, 380, 395 |
| MspA1I | CMGCKG | 2 cut(s) | 566, 836 |
| MspI | CCGG | 3 cut(s) | 12, 632, 894 |
| MspR9I | CCNGG | 2 cut(s) | 592, 646 |
| Mva1269I | GAATGC | 2 cut(s) | 1201, 1273 |
| MvaI | CCWGG | 2 cut(s) | 592, 646 |
| MvnI | CGCG | 1 cut(s) | 1297 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 149, 364, 839, 1085 |
| NlaIII | CATG | 5 cut(s) | 345, 737, 992, 1149, 1277 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 267 |
| NmuCI | GTSAC | 1 cut(s) | 487 |
| NsiI | ATGCAT | 1 cut(s) | 799 |
| NspI | RCATGY | 1 cut(s) | 345 |
| NspV | TTCGAA | 1 cut(s) | 542 |
| PaeR7I | CTCGAG | 2 cut(s) | 206, 1164 |
| PciI | ACATGT | 1 cut(s) | 341 |
| PciSI | GCTCTTC | 1 cut(s) | 440 |
| PctI | GAATGC | 2 cut(s) | 1201, 1273 |
| PfeI | GAWTC | 8 cut(s) | 23, 626, 655, 778, 866, 897, 934, 1363 |
| PflFI | GACNNNGTC | 1 cut(s) | 214 |
| PinAI | ACCGGT | 1 cut(s) | 11 |
| PkrI | GCNGC | 6 cut(s) | 568, 835, 838, 841, 961, 964 |
| PleI | GAGTC | 1 cut(s) | 346 |
| PpsI | GAGTC | 1 cut(s) | 346 |
| PscI | ACATGT | 1 cut(s) | 341 |
| Psp124BI | GAGCTC | 3 cut(s) | 329, 616, 1134 |
| Psp6I | CCWGG | 2 cut(s) | 590, 644 |
| PspGI | CCWGG | 2 cut(s) | 590, 644 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 267 |
| PstI | CTGCAG | 2 cut(s) | 841, 964 |
| PsuI | RGATCY | 2 cut(s) | 28, 265 |
| PsyI | GACNNNGTC | 1 cut(s) | 214 |
| PvuII | CAGCTG | 2 cut(s) | 566, 836 |
| RsaI | GTAC | 2 cut(s) | 879, 1061 |
| RsaNI | GTAC | 2 cut(s) | 878, 1060 |
| SacI | GAGCTC | 3 cut(s) | 329, 616, 1134 |
| SapI | GCTCTTC | 1 cut(s) | 440 |
| SaqAI | TTAA | 3 cut(s) | 87, 380, 395 |
| SatI | GCNGC | 6 cut(s) | 567, 834, 837, 840, 960, 963 |
| ScaI | AGTACT | 1 cut(s) | 879 |
| SchI | GAGTC | 1 cut(s) | 346 |
| ScrFI | CCNGG | 2 cut(s) | 592, 646 |
| SduI | GDGCHC | 3 cut(s) | 329, 616, 1134 |
| SexAI | ACCWGGT | 1 cut(s) | 644 |
| SfaNI | GCATC | 2 cut(s) | 192, 784 |
| SfcI | CTRYAG | 2 cut(s) | 837, 960 |
| Sfr274I | CTCGAG | 2 cut(s) | 206, 1164 |
| SfuI | TTCGAA | 1 cut(s) | 542 |
| SlaI | CTCGAG | 2 cut(s) | 206, 1164 |
| SmlI | CTYRAG | 3 cut(s) | 206, 437, 1164 |
| SmoI | CTYRAG | 3 cut(s) | 206, 437, 1164 |
| Sse9I | AATT | 2 cut(s) | 514, 1121 |
| SsiI | CCGC | 1 cut(s) | 908 |
| SspMI | CTAG | 1 cut(s) | 923 |
| SstI | GAGCTC | 3 cut(s) | 329, 616, 1134 |
| StyD4I | CCNGG | 2 cut(s) | 590, 644 |
| StyI | CCWWGG | 2 cut(s) | 51, 570 |
| TaaI | ACNGT | 3 cut(s) | 214, 487, 814 |
| TaiI | ACGT | 2 cut(s) | 957, 1065 |
| TasI | AATT | 2 cut(s) | 514, 1121 |
| TatI | WGTACW | 1 cut(s) | 877 |
| TfiI | GAWTC | 8 cut(s) | 23, 626, 655, 778, 866, 897, 934, 1363 |
| Tru1I | TTAA | 3 cut(s) | 87, 380, 395 |
| Tru9I | TTAA | 3 cut(s) | 87, 380, 395 |
| TscAI | CASTG | 2 cut(s) | 607, 1109 |
| TseFI | GTSAC | 1 cut(s) | 487 |
| TseI | GCWGC | 6 cut(s) | 566, 833, 836, 839, 959, 962 |
| Tsp45I | GTSAC | 1 cut(s) | 487 |
| TspDTI | ATGAA | 5 cut(s) | 86, 489, 495, 1134, 1376 |
| TspGWI | ACGGA | 2 cut(s) | 389, 1032 |
| TspRI | CASTG | 2 cut(s) | 607, 1109 |
| Tth111I | GACNNNGTC | 1 cut(s) | 214 |
| XceI | RCATGY | 1 cut(s) | 345 |
| XhoI | CTCGAG | 2 cut(s) | 206, 1164 |
| XspI | CTAG | 1 cut(s) | 923 |
| ZrmI | AGTACT | 1 cut(s) | 879 |
| Zsp2I | ATGCAT | 1 cut(s) | 799 |