Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001451

Physical Location & Seq

Genomic Coordinates Forward (+)

31449108 .. 31451954

Gene Structure 2847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1235600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCCAGGAAAGGTTTCGTCTCCGGCGAGGGAACTGTGACCGAAGCCGATGCGTCCACGGCGGCTGAGAAGGCGAAGGCCGTGGAGATAAAGAAGCAGCTGGAGAGGCTGGTGAAGGCCATTGTCGACGAAGATGAATACAGGGTCGAGACAGCCGACGAGGCCATCAGAACCTTGGCTTCTTTGAAAGACTTGAAGTCCCAAAAGTCGTTCTCTTTCAAACTCGCTGAAGGCGGTAGCCATGGCGGCGGTGTTCTTGCTGCCGTTCCTAAAGAATTCAGATGTCCCATTTCCGGAGAGCTCATGGCCGACCCTGTTGTCTTGGCCACTGGAGAGACTTTTGATCGACCATTCATTCAGAGGTGGTTGAACGAAGGCCACAGAACGTGCCCTCAAACAAACCAAGTCATCTCTCATACTGTCCTTACCCCTAATCACCTGGTTCGAGAAATGATTTCACAATGGTGCAGGGAGCGTGAAATTGAGCTTCCGAAACCTGTTCAGGATATTGATGAGCAACTTGTCACCAATGCAGACCGAGGATATCTGAATTCACTGCTTGAGAAGATGTCATCATCTCTATCTGATCAGAAAGCAGCAGCAAAAGAGCTTCGACTGCTAACAAAGCGAAGTTCATCATTTCGGGCACTTTTTGGCGAGTCTACCGAGACCATTCCGCAATTGCTCAATCCACTTTCACTGGGACAGGTTGATGCTCATCCTGATCTTCAAGAAGATCTGATCACCACACTACTAAACCTCTCAATTCATGACAATAACAAAAGATTAGTTGCAGAGAACGCTTCAGTCATCTGTCTGCTTATTGAATCCTTAATATCTGGAACTGTTCAAACAAGAAGCAATGCTGCTGCAACTTTCTTCACACTATCAGCAATTGAATCCAACAAGATTACTATTGGAGCATCAGGTGCTATAAAGCCTTTGATTGACCTGTTAGATGAGGGGCATCCATTAGCAATGAAGGATGCTGCTTCGGCGGTATTCAGCCTGTGTACTGTCCTTGAAAATAAGGGAAGGGCCGTCAATGCTGGAGCAGTCAGGGTGATTCTGAAGAAGATTATGGATCGTGTTTTAGTTGCAGAGTTGTTAGCTATACTTGCAATGCTATCCAGCCATCACAGAGCTGTTCAGGAAATGTGTGAGCTTGGCGCTGTGCCTTGCTTGATTGGCATCACAAGGGAGAGCGACTGCGAGCGCAGCAAGGAGAACTGTGTCGCAATCCTTTACACAATCTGTTTTGCTGACCGGACCAAACTGAAGGAAATTAAGGAAGAGGAAATGCTTAATGGTACATTTTCTAGACTTGTACAAACCGGGACTTCGAGGGCGAAGAGAAAGGCCAGCGGAATTCTTGAAAGGCTGAATAGGACCGGTTCAATAACGCACACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

472

Amino Acids

51.5

Weight (kDa)

6.41

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	89 - 160	8.1e-21	U-box domain
ARM_PUB	PF25598	184 - 358	7.7e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360
fragaria_vesca	FvH4_2g18070 FvH4_6g01250
malus_domestica	MD04G1235600.v1.1 MD05G1165400.v1.1 MD10G1154600.v1.1 MD12G1253300.v1.1
prunus_persica	Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1
pyrus_communis	pycom04g20910 pycom05g15400 pycom10g09710 pycom10g13370 pycom12g23240
rosa_chinensis	RchiOBHm_Chr3g0448811 RchiOBHm_Chr6g0283461
rosa_laevigata	RLG00000012824 RLG00000025873
rosa_multiflora	Rmu_sc0003116.1_g000024 Rmu_sc0004959.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427030 Rroxscaffold_7G00185520
rosa_rugosa	Rorug02G0616500.1 Rorug02G0616600 Rorug06G0154400
rosa_samantha	Rh3AG014900 Rh3BG014700 Rh3CG013600 Rh3DG015200 Rh6AG266700 Rh6BG269200 Rh6CG269100 Rh6DG262500
rosa_wichuraiana	Rw3G001100 Rw6G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AccI	GTMKAC	2 cut(s)	126, 662
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	7 cut(s)	62, 234, 246, 249, 677, 998, 1365
AclWI	GGATC	1 cut(s)	1092
AcoI	YGGCCR	3 cut(s)	3, 306, 324
AcsI	RAATTY	3 cut(s)	275, 550, 1368
AcuI	CTGAAG	4 cut(s)	249, 789, 1091, 1298
AfaI	GTAC	3 cut(s)	1015, 1312, 1329
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgeI	ACCGGT	1 cut(s)	1391
AhdI	GACNNNNNGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	5, 438
AleI	CACNNNNGTG	1 cut(s)	463
AluBI	AGCT	7 cut(s)	100, 301, 487, 610, 1112, 1145, 1165
AluI	AGCT	7 cut(s)	100, 301, 487, 610, 1112, 1145, 1165
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	4 cut(s)	25, 143, 329, 662
AlwI	GGATC	1 cut(s)	1092
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	9 cut(s)	3, 78, 117, 162, 306, 324, 376, 1038, 1359
ApeKI	GCWGC	8 cut(s)	97, 260, 596, 599, 866, 869, 989, 1218
ApoI	RAATTY	3 cut(s)	275, 550, 1368
AsiGI	ACCGGT	1 cut(s)	1391
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	1172, 1218
AspS9I	GGNCC	3 cut(s)	1038, 1269, 1389
AsuC2I	CCSGG	1 cut(s)	1336
AsuHPI	GGTGA	5 cut(s)	124, 428, 517, 736, 1075
AvaII	GGWCC	2 cut(s)	1269, 1389
BaeGI	GKGCMC	2 cut(s)	392, 649
BalI	TGGCCA	2 cut(s)	5, 326
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	8 cut(s)	109, 247, 608, 611, 853, 856, 976, 1230
BccI	CCATC	2 cut(s)	173, 1143
BceAI	ACGGC	4 cut(s)	65, 75, 248, 1025
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	7, 440
BclI	TGATCA	2 cut(s)	586, 741
BcnI	CCSGG	1 cut(s)	1336
BcoDI	GTCTC	4 cut(s)	25, 143, 329, 662
BfaI	CTAG	1 cut(s)	1320
BfoI	RGCGCY	1 cut(s)	1173
BglI	GCCNNNNNGGC	2 cut(s)	161, 246
BglII	AGATCT	1 cut(s)	736
Bme1390I	CCNGG	3 cut(s)	7, 440, 1336
Bme18I	GGWCC	2 cut(s)	1269, 1389
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	1038, 1269, 1389
BmrFI	CCNGG	3 cut(s)	7, 440, 1336
BmrI	ACTGGG	1 cut(s)	710
BmsI	GCATC	6 cut(s)	40, 703, 932, 976, 976, 1200
BmuI	ACTGGG	1 cut(s)	710
BpmI	CTGGAG	3 cut(s)	122, 351, 1071
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	1336
BsaBI	GATNNNNATC	2 cut(s)	717, 1190
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	5 cut(s)	57, 81, 174, 241, 538
BsaWI	WCCGGW	3 cut(s)	293, 1266, 1391
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	1391
Bse1I	ACTGG	2 cut(s)	334, 705
Bse3DI	GCAATG	3 cut(s)	868, 984, 1128
Bse8I	GATNNNNATC	2 cut(s)	717, 1190
BseAI	TCCGGA	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	7, 440
BseDI	CCNNGG	5 cut(s)	57, 81, 174, 241, 538
BseGI	GGATG	3 cut(s)	718, 967, 991
BseJI	GATNNNNATC	2 cut(s)	717, 1190
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	3 cut(s)	868, 984, 1128
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	334, 705
BseSI	GKGCMC	2 cut(s)	392, 649
BseXI	GCAGC	8 cut(s)	109, 247, 608, 611, 853, 856, 976, 1230
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	9 cut(s)	5, 80, 119, 164, 308, 326, 378, 1040, 1361
BshTI	ACCGGT	1 cut(s)	1391
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	5 cut(s)	24, 294, 1267, 1335, 1392
BslFI	GGGAC	4 cut(s)	184, 270, 717, 1351
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	4 cut(s)	25, 143, 329, 662
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	4 cut(s)	184, 270, 717, 1351
BsnI	GGCC	9 cut(s)	5, 80, 119, 164, 308, 326, 378, 1040, 1361
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	3 cut(s)	303, 392, 649
Bsp13I	TCCGGA	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	1327
Bsp143I	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	7 cut(s)	62, 234, 246, 249, 677, 998, 1365
BspANI	GGCC	9 cut(s)	5, 80, 119, 164, 308, 326, 378, 1040, 1361
BspCNI	CTCAG	1 cut(s)	58
BspEI	TCCGGA	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	769
BspPI	GGATC	1 cut(s)	1092
BspTNI	GGTCTC	1 cut(s)	662
BsrDI	GCAATG	3 cut(s)	868, 984, 1128
BsrFI	RCCGGY	1 cut(s)	1391
BsrGI	TGTACA	1 cut(s)	1327
BsrI	ACTGG	2 cut(s)	334, 705
BssAI	RCCGGY	1 cut(s)	1391
BssECI	CCNNGG	5 cut(s)	57, 81, 174, 241, 538
BssMI	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
BssT1I	CCWWGG	2 cut(s)	174, 241
Bst2UI	CCWGG	2 cut(s)	7, 440
Bst4CI	ACNGT	5 cut(s)	37, 421, 847, 1018, 1232
Bst6I	CTCTTC	2 cut(s)	1287, 1346
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	1327
BstC8I	GCNNGC	2 cut(s)	1214, 1363
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	3 cut(s)	57, 81, 241
BstF5I	GGATG	3 cut(s)	718, 967, 991
BstH2I	RGCGCY	1 cut(s)	1173
BstHHI	GCGC	2 cut(s)	1172, 1218
BstKTI	GATC	6 cut(s)	346, 589, 727, 739, 744, 1087
BstMAI	GTCTC	4 cut(s)	25, 143, 329, 662
BstMBI	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
BstNI	CCWGG	2 cut(s)	7, 440
BstSCI	CCNGG	3 cut(s)	5, 438, 1334
BstSLI	GKGCMC	2 cut(s)	392, 649
BstV1I	GCAGC	8 cut(s)	109, 247, 608, 611, 853, 856, 976, 1230
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	9 cut(s)	5, 80, 119, 164, 308, 326, 378, 1040, 1361
BtgI	CCRYGG	3 cut(s)	57, 81, 241
BtsCI	GGATG	3 cut(s)	718, 967, 991
BtsI	GCAGTG	2 cut(s)	554, 1407
BtsIMutI	CAGTG	4 cut(s)	327, 554, 698, 1407
Cac8I	GCNNGC	2 cut(s)	1214, 1363
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	2 cut(s)	1172, 1218
Cfr10I	RCCGGY	1 cut(s)	1391
Cfr13I	GGNCC	3 cut(s)	1038, 1269, 1389
CseI	GACGC	1 cut(s)	42
CsiI	ACCWGGT	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	1014, 1311, 1328
CspAI	ACCGGT	1 cut(s)	1391
CviAII	CATG	3 cut(s)	242, 304, 770
CviQI	GTAC	3 cut(s)	1014, 1311, 1328
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	6 cut(s)	345, 588, 726, 738, 743, 1086
DpnII	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
DrdI	GACNNNNNNGTC	1 cut(s)	317
DriI	GACNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	3 cut(s)	3, 306, 324
Eam1104I	CTCTTC	2 cut(s)	1287, 1346
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	2 cut(s)	1287, 1346
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	174, 241
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	545
Eco47I	GGWCC	2 cut(s)	1269, 1389
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	4 cut(s)	249, 789, 1091, 1298
EcoICRI	GAGCTC	1 cut(s)	301
EcoRI	GAATTC	3 cut(s)	275, 550, 1368
EcoRII	CCWGG	2 cut(s)	5, 438
EcoRV	GATATC	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	174, 241
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	174, 241
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	245, 307, 773
FaiI	YATR	7 cut(s)	243, 305, 417, 771, 935, 1082, 1115
FaqI	GGGAC	4 cut(s)	184, 270, 717, 1351
FatI	CATG	3 cut(s)	241, 303, 769
FbaI	TGATCA	2 cut(s)	586, 741
FblI	GTMKAC	2 cut(s)	126, 662
FokI	GGATG	3 cut(s)	705, 954, 998
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	1320
GlaI	GCGC	2 cut(s)	1171, 1217
GsuI	CTGGAG	3 cut(s)	122, 351, 1071
HaeII	RGCGCY	1 cut(s)	1173
HaeIII	GGCC	9 cut(s)	5, 80, 119, 164, 308, 326, 378, 1040, 1361
HapII	CCGG	5 cut(s)	24, 294, 1267, 1335, 1392
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	2 cut(s)	1172, 1218
Hin1II	CATG	3 cut(s)	245, 307, 773
Hin6I	GCGC	2 cut(s)	1170, 1216
HinP1I	GCGC	2 cut(s)	1170, 1216
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	4 cut(s)	659, 827, 899, 1066
HpaII	CCGG	5 cut(s)	24, 294, 1267, 1335, 1392
HphI	GGTGA	5 cut(s)	124, 428, 517, 736, 1075
Hpy166II	GTNNAC	4 cut(s)	57, 127, 663, 1014
Hpy188I	TCNGA	9 cut(s)	170, 281, 360, 492, 549, 586, 591, 741, 1071
Hpy8I	GTNNAC	4 cut(s)	57, 127, 663, 1014
Hpy99I	CGWCG	2 cut(s)	131, 161
HpyAV	CCTTC	8 cut(s)	64, 70, 109, 224, 368, 976, 1029, 1273
HpyCH4III	ACNGT	5 cut(s)	37, 421, 847, 1018, 1232
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	6 cut(s)	468, 533, 794, 872, 1100, 1121
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	3 cut(s)	245, 307, 773
HspAI	GCGC	2 cut(s)	1170, 1216
Kpn2I	TCCGGA	1 cut(s)	293
Ksp22I	TGATCA	2 cut(s)	586, 741
Kzo9I	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
LmnI	GCTCC	3 cut(s)	472, 920, 1052
Lsp1109I	GCAGC	8 cut(s)	109, 247, 608, 611, 853, 856, 976, 1230
LweI	GCATC	6 cut(s)	40, 703, 932, 976, 976, 1200
MabI	ACCWGGT	1 cut(s)	438
MaeI	CTAG	1 cut(s)	1320
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	37, 523
MalI	GATC	6 cut(s)	345, 588, 726, 738, 743, 1086
MboI	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
MboII	GAAGA	9 cut(s)	143, 577, 719, 746, 871, 1084, 1087, 1304, 1363
MfeI	CAATTG	2 cut(s)	680, 894
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	3 cut(s)	303, 392, 649
MlsI	TGGCCA	2 cut(s)	5, 326
MluCI	AATT	8 cut(s)	275, 480, 550, 680, 765, 894, 1284, 1368
MluNI	TGGCCA	2 cut(s)	5, 326
MlyI	GAGTC	1 cut(s)	668
MmeI	TCCRAC	1 cut(s)	927
Mox20I	TGGCCA	2 cut(s)	5, 326
MroI	TCCGGA	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	14
MscI	TGGCCA	2 cut(s)	5, 326
MseI	TTAA	3 cut(s)	833, 1287, 1305
MslI	CAYNNNNRTG	1 cut(s)	463
Msp20I	TGGCCA	2 cut(s)	5, 326
MspA1I	CMGCKG	2 cut(s)	100, 1365
MspI	CCGG	5 cut(s)	24, 294, 1267, 1335, 1392
MspR9I	CCNGG	3 cut(s)	7, 440, 1336
MunI	CAATTG	2 cut(s)	680, 894
MvaI	CCWGG	2 cut(s)	7, 440
NciI	CCSGG	1 cut(s)	1336
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
NlaIII	CATG	3 cut(s)	245, 307, 773
NmuCI	GTSAC	2 cut(s)	37, 523
OliI	CACNNNNGTG	1 cut(s)	463
PagI	TCATGA	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 153
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	827, 899, 1066
PinAI	ACCGGT	1 cut(s)	1391
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	5, 438
PspGI	CCWGG	2 cut(s)	5, 438
PspPI	GGNCC	3 cut(s)	1038, 1269, 1389
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	3 cut(s)	1015, 1312, 1329
RsaNI	GTAC	3 cut(s)	1014, 1311, 1328
RseI	CAYNNNNRTG	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	833, 1287, 1305
Sau3AI	GATC	6 cut(s)	343, 586, 724, 736, 741, 1084
Sau96I	GGNCC	3 cut(s)	1038, 1269, 1389
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	3 cut(s)	7, 440, 1336
SduI	GDGCHC	3 cut(s)	303, 392, 649
SexAI	ACCWGGT	1 cut(s)	438
SfaNI	GCATC	6 cut(s)	40, 703, 932, 976, 976, 1200
SinI	GGWCC	2 cut(s)	1269, 1389
SmiMI	CAYNNNNRTG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	8 cut(s)	275, 480, 550, 680, 765, 894, 1284, 1368
SsiI	CCGC	7 cut(s)	62, 234, 246, 249, 677, 998, 1365
SspMI	CTAG	1 cut(s)	1320
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	5, 438, 1334
StyI	CCWWGG	2 cut(s)	174, 241
TaaI	ACNGT	5 cut(s)	37, 421, 847, 1018, 1232
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	6 cut(s)	126, 147, 346, 445, 613, 1343
TaqII	GACCGA	2 cut(s)	56, 552
TasI	AATT	8 cut(s)	275, 480, 550, 680, 765, 894, 1284, 1368
TatI	WGTACW	2 cut(s)	1013, 1327
TauI	GCSGC	2 cut(s)	65, 249
TfiI	GAWTC	3 cut(s)	827, 899, 1066
Tru1I	TTAA	3 cut(s)	833, 1287, 1305
Tru9I	TTAA	3 cut(s)	833, 1287, 1305
TscAI	CASTG	4 cut(s)	334, 561, 705, 1414
TseFI	GTSAC	2 cut(s)	37, 523
TseI	GCWGC	8 cut(s)	97, 260, 596, 599, 866, 869, 989, 1218
Tsp45I	GTSAC	2 cut(s)	37, 523
TspDTI	ATGAA	5 cut(s)	150, 343, 624, 758, 995
TspRI	CASTG	4 cut(s)	334, 561, 705, 1414
VpaK11BI	GGWCC	2 cut(s)	1269, 1389
XapI	RAATTY	3 cut(s)	275, 550, 1368
XbaI	TCTAGA	1 cut(s)	1319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	2 cut(s)	126, 662
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.