Rh3CG013600

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
920360 .. 923155
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG013600.1

Sequence Viewer

Length: 1359 bp
ATGGCCAGGACAGGTGTCTTGGAAGAGACTGATAAAGAAGCAGCCATGGAGATAAAGAAGCAGTTGGGGAAACTGGTCAAGGAGATTGTTGAAGAAGAAGACTACAGGGTAGAGACTGCTGATGAGGCTATAAGGGCCTTGTCTTGTTTAAAGAACTTGCAGAGGTCTACAAAGTCTCTCTTTTTTAAACTTGGTGTTCTTGATGTTCCTCAAGAGTTTAGGTGTCCTATTTCTGGAGAGCTCATGACTGATCCTGTTGTCTTGGCCACTGGACAGACTTATGATAGGCCATTCATCCAGAGGTTGTTGAATGAAGGCAGCCGGACATGCCCTCAGACCAAGCAAGTCCTTGCTCACACTATCCTGACCCCAAATAAGTTGGTCCAAGAAATGATTTCACAATGGTGCAAGGAGCATGGTATTGAGTCTCCGAAACCTGTTCAGGATACTGGTGAGGAAGTTGTCACCAACGCAGACCGAAACTATCTGAATGCACTGCTCAACAAGACTTCATCATCATCCCTGGCTGATCAGAAAGAAGCAGCAAAGGAACTTCGGCTGCTAACAAAGAGGAGTTCATCATTTCGGGCATTGTTTGGCGAGTCTGCTGAGATCATTCCACAACTGCTGAGTCCACTTTCACAAGGCCAGATTGCCACTCATCCTGACCTTCAAGAAGACTTGATCACGACTCTACTAAACCTTTCGATTCATGACAACAATAAGAGATTAGTTGCTGAAAACCCCTTGGTGATCCCTCTCCTTATTGATTCCTTAATATCTGGAACAATTCAAACAAAAAGCAATGCTGCTGCAACTTTCTTCACACTATCAGCCATCGATTCCAGCAAGATTGTTATCGGAACATCTGGTGCTCTCAAACCTTTGATTGACCTGTTGCATGAGGGGCATCCATTAGCCATGAAGGATGTTGCTACGGCCATATTCCGCCTATGTACAGACCTTGAAAATAGAGGAAGAGCCGTCAATGCTGGAGTGGTGTGGGTGATTCTGAATAAGATAATGAATGGTGTATTGGTCGCTGAGTTGCTGGCTATACTCGCAATAATTTCAACCAATCAGAAGGCTATTCAGGAAATGTGTGAGCTTGGCGCTGTGTCTTGCTTGATTAGGATCATAAGGGAGAGTGATTGTGAGCGTGACAAGGAGAACTGCATCGTAATCCTTTACAATATCTGCTTTAGTGGTCGCTCCAAATTGAAGGAGATTAAGGACGAGGAAATGGTAAATGGTACATTTTCTAGACTTGCACAGAGTGGAACTTCAAGAGCTAAGAGGAAAGCCATTGGAATTCTTGAGAGGTTGAATAAAACTGGTTCAGTAACACACACTGCTTGA

Protein Analysis

452

Amino Acids

49.81

Weight (kDa)

6.44

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 69 - 139 6e-21 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AciI CCGC 1 cut(s) 949
AclWI GGATC 3 cut(s) 245, 748, 1142
AcoI YGGCCR 3 cut(s) 3, 264, 939
AcsI RAATTY 1 cut(s) 1311
AdeI CACNNNGTG 1 cut(s) 1277
AfaI GTAC 2 cut(s) 958, 1255
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 9 cut(s) 92, 310, 674, 794, 968, 1074, 1222, 1287, 1327
AjnI CCWGG 2 cut(s) 5, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 1019, 1051
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 3 cut(s) 241, 1108, 1292
AluI AGCT 3 cut(s) 241, 1108, 1292
Alw21I GWGCWC 2 cut(s) 243, 877
Alw26I GTCTC 4 cut(s) 20, 107, 180, 432
AlwI GGATC 3 cut(s) 245, 748, 1142
AoxI GGCC 6 cut(s) 3, 135, 264, 287, 646, 939
ApeKI GCWGC 6 cut(s) 41, 318, 542, 559, 809, 812
ApoI RAATTY 1 cut(s) 1311
AspLEI GCGC 1 cut(s) 1115
AspS9I GGNCC 2 cut(s) 135, 382
AsuHPI GGTGA 4 cut(s) 457, 464, 763, 1018
AvaII GGWCC 1 cut(s) 382
BalI TGGCCA 2 cut(s) 5, 266
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 2 cut(s) 105, 684
Bbv12I GWGCWC 2 cut(s) 243, 877
BbvI GCAGC 6 cut(s) 53, 330, 546, 554, 796, 799
BccI CCATC 1 cut(s) 845
BceAI ACGGC 2 cut(s) 954, 968
BciT130I CCWGG 2 cut(s) 7, 524
BciVI GTATCC 1 cut(s) 439
BclI TGATCA 2 cut(s) 529, 684
BcoDI GTCTC 4 cut(s) 20, 107, 180, 432
BfaI CTAG 1 cut(s) 1263
BfmI CTRYAG 1 cut(s) 103
BfoI RGCGCY 1 cut(s) 1116
BfuI GTATCC 1 cut(s) 439
BisI GCNGC 6 cut(s) 42, 319, 543, 560, 810, 813
BlsI GCNGC 6 cut(s) 43, 320, 544, 561, 811, 814
Bme1390I CCNGG 2 cut(s) 7, 524
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 135, 382
BmrFI CCNGG 2 cut(s) 7, 524
BmsI GCATC 2 cut(s) 919, 1185
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 105, 684
BpmI CTGGAG 2 cut(s) 255, 1014
BpuEI CTTGAG 2 cut(s) 195, 1337
Bsa29I ATCGAT 1 cut(s) 840
BsaBI GATNNNNATC 2 cut(s) 857, 1133
BsaJI CCNNGG 3 cut(s) 45, 522, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 4 cut(s) 78, 274, 454, 1339
Bse3DI GCAATG 1 cut(s) 811
Bse8I GATNNNNATC 2 cut(s) 857, 1133
BseBI CCWGG 2 cut(s) 7, 524
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 3 cut(s) 45, 522, 747
BseGI GGATG 5 cut(s) 294, 518, 661, 910, 934
BseJI GATNNNNATC 2 cut(s) 857, 1133
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 811
BseMII CTCAG 4 cut(s) 347, 600, 620, 1035
BseNI ACTGG 4 cut(s) 78, 274, 454, 1339
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 6 cut(s) 53, 330, 546, 554, 796, 799
BshFI GGCC 6 cut(s) 5, 137, 266, 289, 648, 941
BshVI ATCGAT 1 cut(s) 840
BsiHKAI GWGCWC 2 cut(s) 243, 877
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 4 cut(s) 20, 107, 180, 432
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 6 cut(s) 5, 137, 266, 289, 648, 941
Bsp1286I GDGCHC 2 cut(s) 243, 877
Bsp1407I TGTACA 1 cut(s) 956
Bsp143I GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 949
BspANI GGCC 6 cut(s) 5, 137, 266, 289, 648, 941
BspCNI CTCAG 4 cut(s) 346, 601, 621, 1036
BspDI ATCGAT 1 cut(s) 840
BspHI TCATGA 2 cut(s) 243, 712
BspPI GGATC 3 cut(s) 245, 748, 1142
BspQI GCTCTTC 1 cut(s) 973
BsrDI GCAATG 1 cut(s) 811
BsrGI TGTACA 1 cut(s) 956
BsrI ACTGG 4 cut(s) 78, 274, 454, 1339
BssECI CCNNGG 3 cut(s) 45, 522, 747
BssMI GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
BssT1I CCWWGG 2 cut(s) 45, 747
Bst2UI CCWGG 2 cut(s) 7, 524
Bst6I CTCTTC 2 cut(s) 18, 973
BstAUI TGTACA 1 cut(s) 956
BstC8I GCNNGC 1 cut(s) 1053
BstDEI CTNAG 5 cut(s) 333, 609, 629, 1044, 1293
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 5 cut(s) 294, 518, 661, 910, 934
BstH2I RGCGCY 1 cut(s) 1116
BstHHI GCGC 1 cut(s) 1115
BstKTI GATC 6 cut(s) 253, 532, 615, 687, 756, 1137
BstMAI GTCTC 4 cut(s) 20, 107, 180, 432
BstMBI GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
BstMWI GCNNNNNNNGC 6 cut(s) 125, 134, 327, 907, 989, 1061
BstNI CCWGG 2 cut(s) 7, 524
BstNSI RCATGY 1 cut(s) 330
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 5, 522
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 6 cut(s) 53, 330, 546, 554, 796, 799
BstV2I GAAGAC 2 cut(s) 105, 684
Bsu15I ATCGAT 1 cut(s) 840
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 6 cut(s) 5, 137, 266, 289, 648, 941
BsuTUI ATCGAT 1 cut(s) 840
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 5 cut(s) 294, 518, 661, 910, 934
BtsI GCAGTG 2 cut(s) 494, 1350
BtsIMutI CAGTG 3 cut(s) 267, 494, 1350
Cac8I GCNNGC 1 cut(s) 1053
CciI TCATGA 2 cut(s) 243, 712
CfoI GCGC 1 cut(s) 1115
Cfr13I GGNCC 2 cut(s) 135, 382
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 2 cut(s) 957, 1254
CviAII CATG 7 cut(s) 46, 244, 327, 416, 713, 902, 922
CviQI GTAC 2 cut(s) 957, 1254
DdeI CTNAG 5 cut(s) 333, 609, 629, 1044, 1293
DpnI GATC 6 cut(s) 252, 531, 614, 686, 755, 1136
DpnII GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
DraI TTTAAA 2 cut(s) 150, 187
DraIII CACNNNGTG 1 cut(s) 1277
EaeI YGGCCR 3 cut(s) 3, 264, 939
Eam1104I CTCTTC 2 cut(s) 18, 973
EarI CTCTTC 2 cut(s) 18, 973
EciI GGCGGA 1 cut(s) 938
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 45, 747
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 1311
EcoRII CCWGG 2 cut(s) 5, 522
EcoT14I CCWWGG 2 cut(s) 45, 747
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 45, 747
FaeI CATG 7 cut(s) 49, 247, 330, 419, 716, 905, 925
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 7 cut(s) 45, 243, 326, 415, 712, 901, 921
FbaI TGATCA 2 cut(s) 529, 684
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 6 cut(s) 42, 319, 543, 560, 810, 813
FokI GGATG 5 cut(s) 281, 505, 648, 897, 941
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 6 cut(s) 42, 319, 543, 560, 810, 813
FspBI CTAG 1 cut(s) 1263
GlaI GCGC 1 cut(s) 1114
GluI GCNGC 6 cut(s) 42, 319, 543, 560, 810, 813
GsuI CTGGAG 2 cut(s) 255, 1014
HaeII RGCGCY 1 cut(s) 1116
HaeIII GGCC 6 cut(s) 5, 137, 266, 289, 648, 941
HapII CCGG 1 cut(s) 322
HhaI GCGC 1 cut(s) 1115
Hin1II CATG 7 cut(s) 49, 247, 330, 419, 716, 905, 925
Hin6I GCGC 1 cut(s) 1113
HinP1I GCGC 1 cut(s) 1113
HinfI GANTC 8 cut(s) 425, 602, 631, 691, 709, 770, 842, 1009
HpaII CCGG 1 cut(s) 322
HphI GGTGA 4 cut(s) 457, 464, 763, 1018
Hpy166II GTNNAC 2 cut(s) 168, 635
Hpy188I TCNGA 7 cut(s) 336, 432, 489, 534, 863, 1014, 1083
Hpy8I GTNNAC 2 cut(s) 168, 635
HpyAV CCTTC 5 cut(s) 308, 680, 919, 1078, 1216
HpyCH4V TGCA 7 cut(s) 160, 408, 494, 815, 901, 1176, 1271
HpyF10VI GCNNNNNNNGC 6 cut(s) 125, 134, 327, 907, 989, 1061
HpyF3I CTNAG 5 cut(s) 333, 609, 629, 1044, 1293
Hsp92II CATG 7 cut(s) 49, 247, 330, 419, 716, 905, 925
HspAI GCGC 1 cut(s) 1113
Ksp22I TGATCA 2 cut(s) 529, 684
Kzo9I GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
LguI GCTCTTC 1 cut(s) 973
LmnI GCTCC 2 cut(s) 412, 1217
Lsp1109I GCAGC 6 cut(s) 53, 330, 546, 554, 796, 799
LweI GCATC 2 cut(s) 919, 1185
MaeI CTAG 1 cut(s) 1263
MaeIII GTNAC 3 cut(s) 463, 1160, 1342
MalI GATC 6 cut(s) 252, 531, 614, 686, 755, 1136
MboI GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
MboII GAAGA 7 cut(s) 35, 104, 107, 110, 689, 814, 990
MhlI GDGCHC 2 cut(s) 243, 877
MlsI TGGCCA 2 cut(s) 5, 266
MluCI AATT 4 cut(s) 789, 1068, 1217, 1311
MluNI TGGCCA 2 cut(s) 5, 266
MlyI GAGTC 4 cut(s) 434, 611, 640, 685
Mox20I TGGCCA 2 cut(s) 5, 266
MscI TGGCCA 2 cut(s) 5, 266
MseI TTAA 4 cut(s) 149, 186, 776, 1230
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 2 cut(s) 5, 266
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 2 cut(s) 7, 524
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 2 cut(s) 7, 524
MwoI GCNNNNNNNGC 6 cut(s) 125, 134, 327, 907, 989, 1061
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
NlaIII CATG 7 cut(s) 49, 247, 330, 419, 716, 905, 925
NmuCI GTSAC 2 cut(s) 463, 1160
NspI RCATGY 1 cut(s) 330
OliI CACNNNNGTG 1 cut(s) 403
PagI TCATGA 2 cut(s) 243, 712
PciSI GCTCTTC 1 cut(s) 973
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 4 cut(s) 709, 770, 842, 1009
PkrI GCNGC 6 cut(s) 43, 320, 544, 561, 811, 814
PleI GAGTC 4 cut(s) 433, 610, 639, 685
PpsI GAGTC 4 cut(s) 433, 610, 639, 685
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 5, 522
PspGI CCWGG 2 cut(s) 5, 522
PspPI GGNCC 2 cut(s) 135, 382
RsaI GTAC 2 cut(s) 958, 1255
RsaNI GTAC 2 cut(s) 957, 1254
RseI CAYNNNNRTG 1 cut(s) 403
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 973
SaqAI TTAA 4 cut(s) 149, 186, 776, 1230
SatI GCNGC 6 cut(s) 42, 319, 543, 560, 810, 813
Sau3AI GATC 6 cut(s) 250, 529, 612, 684, 753, 1134
Sau96I GGNCC 2 cut(s) 135, 382
SchI GAGTC 4 cut(s) 434, 611, 640, 685
ScrFI CCNGG 2 cut(s) 7, 524
SduI GDGCHC 2 cut(s) 243, 877
SfaNI GCATC 2 cut(s) 919, 1185
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 2 cut(s) 210, 1316
SmoI CTYRAG 2 cut(s) 210, 1316
Sse9I AATT 4 cut(s) 789, 1068, 1217, 1311
SsiI CCGC 1 cut(s) 949
SspMI CTAG 1 cut(s) 1263
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 5, 522
StyI CCWWGG 2 cut(s) 45, 747
TaqI TCGA 2 cut(s) 707, 840
TaqII GACCGA 1 cut(s) 492
TasI AATT 4 cut(s) 789, 1068, 1217, 1311
TatI WGTACW 1 cut(s) 956
TfiI GAWTC 4 cut(s) 709, 770, 842, 1009
Tru1I TTAA 4 cut(s) 149, 186, 776, 1230
Tru9I TTAA 4 cut(s) 149, 186, 776, 1230
TscAI CASTG 3 cut(s) 274, 501, 1357
TseFI GTSAC 2 cut(s) 463, 1160
TseI GCWGC 6 cut(s) 41, 318, 542, 559, 809, 812
Tsp45I GTSAC 2 cut(s) 463, 1160
TspDTI ATGAA 7 cut(s) 283, 327, 501, 567, 701, 938, 1040
TspRI CASTG 3 cut(s) 274, 501, 1357
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 1 cut(s) 1311
XbaI TCTAGA 1 cut(s) 1262
XceI RCATGY 1 cut(s) 330
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.