FvH4_6g01250

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
680379 .. 682925
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01250.t1

Sequence Viewer

Length: 1350 bp
ATGGCCAGGACAGGTGTCTCGGAAGAGACTGATAAAGAAGCAGCCATGGAGATAAAGAAGCAGTTGAGGAAACTGGTCAAGGACATTGTTGAAGAAGAAGACTATAGGGTAGAGACTGCTGAGGAGGCTATGAGGGCCTTGTCTTCTTTGAAGAACTTGAAGAGTTCTAAAAAGTCTCTCTCTTTCAAACTTGATGTTCCTCAAGAATTTAGGTGTCCTATTTCTGGAGAGCTCATGATTGACCCTGTTGTCTTGGCCACTGGACAGACTTATGATAGGCCATTCATCCAGAGGTTGTTGAATGAAGGTAGCCAGATATGCCCTCAGACCAAGCAAGTCCTTGCTCATACTATCCTGACCCCAAATAACTTGGTCCGACAAATGATTTCACAATGGTGCAAGGAGCATGGTATTGAGTCTCCGAAACCTGTTCAAGATATTGGTGAGGAAATTGTCACTAGTGCAGACCGAAACTATCTGAATGCACTGCTTCAGAAGACTTCATCATCTTCCCTGTCTGATCAGAAAGAAGCAGCAAAGGAACTTCGACTGCTAACAAAGAGGAGTTCATCATTTCGGGCTTTGTTTGGCGAGTCGGCTGAGATCATTGCACAACTGCTGAGTCCACTTTCACAGGGTCAAGTTGCCACTCATCCTGACCTTCAAGAAGACTTGATCACGACTCTACTAAACCTTTCAATTCATGACAACAATAAGAGATTAGTTGCTGAAAACCCATTGGTGATCCCTCTCCTTATTGAATCCTTAGTGTTTGGAACCATTCAAACAAAAAGCAATGCTGCAGCAACTTTCTTCACATTATCAGCCATCGATTCCAACAAGATTGTTATTGGCGCATCTGGTGCTCTCAAACCTCTGATTGACTTGTTACATGAGGGGCATCCATTAGCCATGAAGGATGTTGCCACGGCCATATTCCGCCTATGTACAGACCTTGAAAATAGAGGAAGAGCCGTCAATGCTGGAGTGGTGTGGGTGATTCTGAAGAAGATAATGGATGGTGTATTGGTTGCTGAGTTGCTGGCTATACTTGCAATCATTTCGACCAATCAGAAGGCTATTCAGGACATGTGTGAATTTGGTGCTGTGTCTTGTTTGGTTAAAATCATCAGGGAGAGTAATTGTGAGCGCGACAAGGAGAACTGCATTGTGATCCTGTACAATATCTGCTTTAGTGCTCGGTCTAAACTGAAGGAGATTAAGGACGAGGAAATGTCGAATGGTACATTTTCTAGACTTGCACAGAGTGGAACTTCAAGAGCTAAAAGGAAGGCCATTGGAATTCTTGAGAGGTTGAATAAGACTGGTACAGTAACACACACTGCTTGA

Protein Analysis

450

Amino Acids

49.58

Weight (kDa)

7.55

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 66 - 136 1.4e-20 U-box domain
ARM_PUB PF25598 342 - 447 8.6e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AccII CGCG 1 cut(s) 1152
AciI CCGC 1 cut(s) 940
AclWI GGATC 2 cut(s) 739, 1168
AcoI YGGCCR 3 cut(s) 3, 255, 930
AcsI RAATTY 3 cut(s) 206, 1097, 1302
AcuI CTGAAG 3 cut(s) 476, 1025, 1232
AdeI CACNNNGTG 1 cut(s) 1268
AfaI GTAC 4 cut(s) 949, 1181, 1246, 1330
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 1089
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 394
AluBI AGCT 2 cut(s) 232, 1283
AluI AGCT 2 cut(s) 232, 1283
Alw21I GWGCWC 3 cut(s) 234, 868, 1201
Alw26I GTCTC 5 cut(s) 20, 22, 107, 180, 423
AlwI GGATC 2 cut(s) 739, 1168
AoxI GGCC 6 cut(s) 3, 135, 255, 278, 930, 1293
ApeKI GCWGC 4 cut(s) 41, 533, 800, 803
ApoI RAATTY 3 cut(s) 206, 1097, 1302
AspLEI GCGC 2 cut(s) 857, 1152
AspS9I GGNCC 2 cut(s) 135, 373
AsuHPI GGTGA 3 cut(s) 455, 754, 1009
AvaII GGWCC 1 cut(s) 373
BalI TGGCCA 2 cut(s) 5, 257
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 4 cut(s) 105, 135, 503, 675
Bbv12I GWGCWC 3 cut(s) 234, 868, 1201
BbvCI CCTCAGC 1 cut(s) 120
BbvI GCAGC 4 cut(s) 53, 545, 787, 815
BccI CCATC 2 cut(s) 836, 1013
BceAI ACGGC 2 cut(s) 945, 959
BcgI CGANNNNNNTGC 2 cut(s) 1044, 1078
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 2 cut(s) 520, 675
BcoDI GTCTC 5 cut(s) 20, 22, 107, 180, 423
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 2 cut(s) 459, 1254
BfmI CTRYAG 2 cut(s) 103, 801
BisI GCNGC 4 cut(s) 42, 534, 801, 804
BlsI GCNGC 4 cut(s) 43, 535, 802, 805
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 135, 373
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 2 cut(s) 866, 910
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 4 cut(s) 105, 135, 503, 675
BpmI CTGGAG 2 cut(s) 246, 1005
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 186, 1328
Bsa29I ATCGAT 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 45, 927
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 3 cut(s) 78, 265, 1330
Bse3DI GCAATG 2 cut(s) 606, 802
BseBI CCWGG 1 cut(s) 7
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 45, 927
BseGI GGATG 5 cut(s) 285, 652, 901, 925, 1024
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 2 cut(s) 606, 802
BseMII CTCAG 5 cut(s) 111, 338, 591, 611, 1026
BseNI ACTGG 3 cut(s) 78, 265, 1330
BseRI GAGGAG 2 cut(s) 137, 577
BseXI GCAGC 4 cut(s) 53, 545, 787, 815
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 1152
BshFI GGCC 6 cut(s) 5, 137, 257, 280, 932, 1295
BshVI ATCGAT 1 cut(s) 831
BsiHKAI GWGCWC 3 cut(s) 234, 868, 1201
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 5 cut(s) 20, 22, 107, 180, 423
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 6 cut(s) 5, 137, 257, 280, 932, 1295
Bsp1286I GDGCHC 3 cut(s) 234, 868, 1201
Bsp1407I TGTACA 2 cut(s) 947, 1179
Bsp143I GATC 5 cut(s) 520, 603, 675, 744, 1173
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 940
BspANI GGCC 6 cut(s) 5, 137, 257, 280, 932, 1295
BspCNI CTCAG 5 cut(s) 112, 337, 592, 612, 1027
BspDI ATCGAT 1 cut(s) 831
BspFNI CGCG 1 cut(s) 1152
BspHI TCATGA 2 cut(s) 234, 703
BspLI GGNNCC 1 cut(s) 778
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 2 cut(s) 739, 1168
BspQI GCTCTTC 1 cut(s) 964
BsrDI GCAATG 2 cut(s) 606, 802
BsrGI TGTACA 2 cut(s) 947, 1179
BsrI ACTGG 3 cut(s) 78, 265, 1330
BssECI CCNNGG 2 cut(s) 45, 927
BssMI GATC 5 cut(s) 520, 603, 675, 744, 1173
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 1333
Bst6I CTCTTC 3 cut(s) 18, 155, 964
BstAPI GCANNNNNTGC 1 cut(s) 863
BstAUI TGTACA 2 cut(s) 947, 1179
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 6 cut(s) 120, 324, 600, 620, 766, 1035
BstDSI CCRYGG 2 cut(s) 45, 927
BstF5I GGATG 5 cut(s) 285, 652, 901, 925, 1024
BstFNI CGCG 1 cut(s) 1152
BstHHI GCGC 2 cut(s) 857, 1152
BstKTI GATC 5 cut(s) 523, 606, 678, 747, 1176
BstMAI GTCTC 5 cut(s) 20, 22, 107, 180, 423
BstMBI GATC 5 cut(s) 520, 603, 675, 744, 1173
BstMWI GCNNNNNNNGC 6 cut(s) 125, 134, 318, 863, 980, 1052
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 1093
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 2 cut(s) 103, 801
BstUI CGCG 1 cut(s) 1152
BstV1I GCAGC 4 cut(s) 53, 545, 787, 815
BstV2I GAAGAC 4 cut(s) 105, 135, 503, 675
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 6 cut(s) 5, 137, 257, 280, 932, 1295
BsuTUI ATCGAT 1 cut(s) 831
BtgI CCRYGG 2 cut(s) 45, 927
BtsCI GGATG 5 cut(s) 285, 652, 901, 925, 1024
BtsI GCAGTG 2 cut(s) 485, 1341
BtsIMutI CAGTG 3 cut(s) 258, 485, 1341
Cac8I GCNNGC 1 cut(s) 1044
CciI TCATGA 2 cut(s) 234, 703
CfoI GCGC 2 cut(s) 857, 1152
Cfr13I GGNCC 2 cut(s) 135, 373
ClaI ATCGAT 1 cut(s) 831
Csp6I GTAC 4 cut(s) 948, 1180, 1245, 1329
CviAII CATG 7 cut(s) 46, 235, 407, 704, 893, 913, 1090
CviQI GTAC 4 cut(s) 948, 1180, 1245, 1329
DdeI CTNAG 6 cut(s) 120, 324, 600, 620, 766, 1035
DpnI GATC 5 cut(s) 522, 605, 677, 746, 1175
DpnII GATC 5 cut(s) 520, 603, 675, 744, 1173
DraIII CACNNNGTG 1 cut(s) 1268
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 3 cut(s) 3, 255, 930
Eam1104I CTCTTC 3 cut(s) 18, 155, 964
EarI CTCTTC 3 cut(s) 18, 155, 964
EciI GGCGGA 1 cut(s) 929
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 373
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 3 cut(s) 476, 1025, 1232
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 1302
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 7 cut(s) 49, 238, 410, 707, 896, 916, 1093
FatI CATG 7 cut(s) 45, 234, 406, 703, 892, 912, 1089
FbaI TGATCA 2 cut(s) 520, 675
Fnu4HI GCNGC 4 cut(s) 42, 534, 801, 804
FokI GGATG 5 cut(s) 272, 639, 888, 932, 1031
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 42, 534, 801, 804
FspBI CTAG 2 cut(s) 459, 1254
GlaI GCGC 2 cut(s) 856, 1151
GluI GCNGC 4 cut(s) 42, 534, 801, 804
GsuI CTGGAG 2 cut(s) 246, 1005
HaeIII GGCC 6 cut(s) 5, 137, 257, 280, 932, 1295
HhaI GCGC 2 cut(s) 857, 1152
Hin1II CATG 7 cut(s) 49, 238, 410, 707, 896, 916, 1093
Hin6I GCGC 2 cut(s) 855, 1150
HinP1I GCGC 2 cut(s) 855, 1150
HinfI GANTC 7 cut(s) 416, 593, 622, 682, 761, 833, 1000
HphI GGTGA 3 cut(s) 455, 754, 1009
Hpy166II GTNNAC 1 cut(s) 626
Hpy8I GTNNAC 1 cut(s) 626
HpyAV CCTTC 6 cut(s) 299, 671, 910, 1069, 1207, 1285
HpyCH4III ACNGT 1 cut(s) 1333
HpyCH4V TGCA 8 cut(s) 399, 464, 485, 611, 803, 1055, 1167, 1262
HpyF10VI GCNNNNNNNGC 6 cut(s) 125, 134, 318, 863, 980, 1052
HpyF3I CTNAG 6 cut(s) 120, 324, 600, 620, 766, 1035
Hsp92II CATG 7 cut(s) 49, 238, 410, 707, 896, 916, 1093
HspAI GCGC 2 cut(s) 855, 1150
Ksp22I TGATCA 2 cut(s) 520, 675
Kzo9I GATC 5 cut(s) 520, 603, 675, 744, 1173
LguI GCTCTTC 1 cut(s) 964
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 4 cut(s) 53, 545, 787, 815
LweI GCATC 2 cut(s) 866, 910
MaeI CTAG 2 cut(s) 459, 1254
MaeIII GTNAC 3 cut(s) 454, 888, 1333
MalI GATC 5 cut(s) 522, 605, 677, 746, 1175
MboI GATC 5 cut(s) 520, 603, 675, 744, 1173
MhlI GDGCHC 3 cut(s) 234, 868, 1201
MlsI TGGCCA 2 cut(s) 5, 257
MluCI AATT 6 cut(s) 206, 450, 699, 1097, 1141, 1302
MluNI TGGCCA 2 cut(s) 5, 257
MlyI GAGTC 4 cut(s) 425, 602, 631, 676
MmeI TCCRAC 2 cut(s) 400, 861
Mox20I TGGCCA 2 cut(s) 5, 257
MscI TGGCCA 2 cut(s) 5, 257
MseI TTAA 2 cut(s) 1122, 1221
MslI CAYNNNNRTG 1 cut(s) 394
Msp20I TGGCCA 2 cut(s) 5, 257
MspR9I CCNGG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 1152
MwoI GCNNNNNNNGC 6 cut(s) 125, 134, 318, 863, 980, 1052
NcoI CCATGG 1 cut(s) 45
NdeII GATC 5 cut(s) 520, 603, 675, 744, 1173
NlaIII CATG 7 cut(s) 49, 238, 410, 707, 896, 916, 1093
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 1 cut(s) 1093
OliI CACNNNNGTG 1 cut(s) 394
PagI TCATGA 2 cut(s) 234, 703
PciI ACATGT 1 cut(s) 1089
PciSI GCTCTTC 1 cut(s) 964
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 3 cut(s) 761, 833, 1000
PkrI GCNGC 4 cut(s) 43, 535, 802, 805
PleI GAGTC 4 cut(s) 424, 601, 630, 676
PpsI GAGTC 4 cut(s) 424, 601, 630, 676
PscI ACATGT 1 cut(s) 1089
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 2 cut(s) 135, 373
PstI CTGCAG 1 cut(s) 805
RsaI GTAC 4 cut(s) 949, 1181, 1246, 1330
RsaNI GTAC 4 cut(s) 948, 1180, 1245, 1329
RseI CAYNNNNRTG 1 cut(s) 394
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 964
SaqAI TTAA 2 cut(s) 1122, 1221
SatI GCNGC 4 cut(s) 42, 534, 801, 804
Sau3AI GATC 5 cut(s) 520, 603, 675, 744, 1173
Sau96I GGNCC 2 cut(s) 135, 373
SchI GAGTC 4 cut(s) 425, 602, 631, 676
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 3 cut(s) 234, 868, 1201
SfaNI GCATC 2 cut(s) 866, 910
SfcI CTRYAG 2 cut(s) 103, 801
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 394
SmlI CTYRAG 2 cut(s) 201, 1307
SmoI CTYRAG 2 cut(s) 201, 1307
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 6 cut(s) 206, 450, 699, 1097, 1141, 1302
SsiI CCGC 1 cut(s) 940
SspMI CTAG 2 cut(s) 459, 1254
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 1333
TaqI TCGA 4 cut(s) 547, 831, 1064, 1238
TaqII GACCGA 2 cut(s) 483, 1191
TasI AATT 6 cut(s) 206, 450, 699, 1097, 1141, 1302
TatI WGTACW 2 cut(s) 947, 1179
TfiI GAWTC 3 cut(s) 761, 833, 1000
Tru1I TTAA 2 cut(s) 1122, 1221
Tru9I TTAA 2 cut(s) 1122, 1221
TscAI CASTG 3 cut(s) 265, 492, 1348
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 4 cut(s) 41, 533, 800, 803
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 6 cut(s) 274, 318, 492, 558, 692, 929
TspRI CASTG 3 cut(s) 265, 492, 1348
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 3 cut(s) 206, 1097, 1302
XbaI TCTAGA 1 cut(s) 1253
XceI RCATGY 1 cut(s) 1093
XspI CTAG 2 cut(s) 459, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.