Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001451

Physical Location & Seq

Genomic Coordinates Reverse (-)

18913242 .. 18914730

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAGACCCTGTGATTGTCTCCACAGGCGAGACATATGATAAGGCATTCATCGAAAAAGGACTGAAAGCGGGCAACAGGATATGCCCTCGAACGCAACAAGTGCTCACACACACTGTCCTTACTCCGAATCACTTGGTTCGTGAAATGATATCGCAATGGTGTAGGAATCGAGGGCTTGAATTGTCAGATCGCGTTCTCCATGTCAATGAGGATGGTATAACAGAATCTGATCGAGATCATTTTCTCTCTTTGCTCCGGAAGATGTCTTCGACGTTCCCTGAGCAGAAAGAAGCTGCGAAGGAGCTTCGGATGCTGACAAAGAGGATGCCTTCTTTCCGTGCGCTTTTTAACGAGTCTATACATGCCATTCCTCAATTGCTCAGTCCTCTATCTGAAGGGAAGTTTGAAGATGGTATTGACCCGGAACTCCAAGAAGATATTATCACAACACTATTGAATTTGTCAATCCACGACAACAACAAGAAGCTTGTGGCTGAAACTTTAATGGTAATTCCTTTACTTATGGAAGCATTGCAATCGGGGACTATTCAAACAAGGAGCAATGCAGCTGCAGCTCTTTTCACTTTGTCAGCTCTTGATTCCAACAAGGCACTTATTGGAAAATCAGGTGCCCTAAAGCCACTCATTGCCCTCCTAGACGAGGGACATCCATTAGCTATGAAAGATGTTGCCTCTGCAATTTTCAATCTATGCATTACTCATGAGAACAAGGCAAGAGCTGTGAGAGACGGGGCAGTGAGGACGATTCTGAAAAAGATAGCGAACAGTGTGCATGTTGATGAGCTGTTGGCCATCCTCGCAATGATCGATCAAGACATCCTAAGGCTGTGGAGGAAATGGGAGAGCTTGGAGGTGTTTCTTGCTTGCTCCGTGTTATCAGGGAGACCAATTGCTCACGCAACAAGGAGAATTGCATTGCAGTCCTTCACACAATCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

322

Amino Acids

35.8

Weight (kDa)

7.76

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	1 - 57	3e-12	U-box domain
ARM_PUB	PF25598	87 - 264	8.6e-07	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360
fragaria_vesca	FvH4_2g18070 FvH4_6g01250
malus_domestica	MD04G1235600.v1.1 MD05G1165400.v1.1 MD10G1154600.v1.1 MD12G1253300.v1.1
prunus_persica	Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1
pyrus_communis	pycom04g20910 pycom05g15400 pycom10g09710 pycom10g13370 pycom12g23240
rosa_chinensis	RchiOBHm_Chr3g0448811 RchiOBHm_Chr6g0283461
rosa_laevigata	RLG00000012824 RLG00000025873
rosa_multiflora	Rmu_sc0003116.1_g000024 Rmu_sc0004959.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427030 Rroxscaffold_7G00185520
rosa_rugosa	Rorug02G0616500.1 Rorug02G0616600 Rorug06G0154400
rosa_samantha	Rh3AG014900 Rh3BG014700 Rh3CG013600 Rh3DG015200 Rh6AG266700 Rh6BG269200 Rh6CG269100 Rh6DG262500
rosa_wichuraiana	Rw3G001100 Rw6G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccII	CGCG	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	664
AgsI	TTSAA	5 cut(s)	182, 410, 460, 554, 709
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	4 cut(s)	25, 26, 744, 901
AlwNI	CAGNNNCTG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	1 cut(s)	813
ApeKI	GCWGC	4 cut(s)	296, 569, 572, 575
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	815
BanI	GGYRCC	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	283, 559, 581, 587
BccI	CCATC	3 cut(s)	209, 407, 824
BcgI	CGANNNNNNTGC	4 cut(s)	522, 556, 775, 809
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	4 cut(s)	25, 26, 744, 901
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	573
BisI	GCNGC	4 cut(s)	297, 570, 573, 576
BlsI	GCNGC	4 cut(s)	298, 571, 574, 577
Bme1390I	CCNGG	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	303, 318
BpiI	GAAGAC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	901
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse21I	CCTNAGG	1 cut(s)	845
Bse3DI	GCAATG	6 cut(s)	164, 533, 571, 648, 831, 938
Bse8I	GATNNNNATC	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	831
BseGI	GGATG	6 cut(s)	220, 318, 333, 670, 816, 840
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMI	GCAATG	6 cut(s)	164, 533, 571, 648, 831, 938
BseMII	CTCAG	2 cut(s)	273, 397
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	4 cut(s)	283, 559, 581, 587
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	815
BshNI	GGYRCC	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	259, 425
BslFI	GGGAC	2 cut(s)	559, 681
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	4 cut(s)	25, 26, 744, 901
BsmBI	CGTCTC	1 cut(s)	744
BsmFI	GGGAC	2 cut(s)	559, 681
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	815
Bso31I	GGTCTC	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	108, 637
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	190, 232, 238, 828, 832
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	2 cut(s)	274, 396
BspDI	ATCGAT	1 cut(s)	831
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	634
BspMAI	CTGCAG	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	901
BsrDI	GCAATG	6 cut(s)	164, 533, 571, 648, 831, 938
BssMI	GATC	5 cut(s)	190, 232, 238, 828, 832
Bst4CI	ACNGT	2 cut(s)	118, 791
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	73, 889
BstDEI	CTNAG	3 cut(s)	282, 383, 845
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	6 cut(s)	220, 318, 333, 670, 816, 840
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	5 cut(s)	193, 235, 241, 831, 835
BstMAI	GTCTC	4 cut(s)	25, 26, 744, 901
BstMBI	GATC	5 cut(s)	190, 232, 238, 828, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 313, 575, 821
BstNSI	RCATGY	2 cut(s)	368, 800
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	283, 559, 581, 587
BstV2I	GAAGAC	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	845
BsuRI	GGCC	1 cut(s)	815
BsuTUI	ATCGAT	1 cut(s)	831
BtsCI	GGATG	6 cut(s)	220, 318, 333, 670, 816, 840
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	114, 765, 796
Cac8I	GCNNGC	2 cut(s)	73, 889
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	831
CviAII	CATG	4 cut(s)	203, 365, 725, 797
DdeI	CTNAG	3 cut(s)	282, 383, 845
DpnI	GATC	5 cut(s)	192, 234, 240, 830, 834
DpnII	GATC	5 cut(s)	190, 232, 238, 828, 832
EaeI	YGGCCR	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	901
Eco32I	GATATC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoRV	GATATC	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	719
Esp3I	CGTCTC	1 cut(s)	744
FaeI	CATG	4 cut(s)	206, 368, 728, 800
FaqI	GGGAC	2 cut(s)	559, 681
FatI	CATG	4 cut(s)	202, 364, 724, 796
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	297, 570, 573, 576
FokI	GGATG	6 cut(s)	227, 325, 340, 657, 803, 827
Fsp4HI	GCNGC	4 cut(s)	297, 570, 573, 576
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	4 cut(s)	297, 570, 573, 576
HaeIII	GGCC	1 cut(s)	815
HapII	CCGG	2 cut(s)	259, 425
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	206, 368, 728, 800
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	6 cut(s)	130, 169, 227, 356, 602, 769
HpaII	CCGG	2 cut(s)	259, 425
Hpy188I	TCNGA	6 cut(s)	129, 190, 232, 312, 397, 774
Hpy188III	TCNNGA	6 cut(s)	143, 236, 259, 599, 725, 836
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	4 cut(s)	295, 342, 392, 958
HpyCH4III	ACNGT	2 cut(s)	118, 791
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	8 cut(s)	538, 569, 575, 701, 717, 796, 938, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 313, 575, 821
HpyF3I	CTNAG	3 cut(s)	282, 383, 845
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	206, 368, 728, 800
HspAI	GCGC	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	258
Kzo9I	GATC	5 cut(s)	190, 232, 238, 828, 832
LmnI	GCTCC	4 cut(s)	261, 304, 561, 896
LpnPI	CCDG	8 cut(s)	12, 24, 64, 272, 294, 438, 615, 888
Lsp1109I	GCAGC	4 cut(s)	283, 559, 581, 587
LweI	GCATC	2 cut(s)	303, 318
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	275
MalI	GATC	5 cut(s)	192, 234, 240, 830, 834
MboI	GATC	5 cut(s)	190, 232, 238, 828, 832
MboII	GAAGA	4 cut(s)	261, 274, 422, 449
MfeI	CAATTG	2 cut(s)	377, 912
MhlI	GDGCHC	2 cut(s)	108, 637
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	7 cut(s)	182, 377, 460, 513, 702, 912, 933
MluNI	TGGCCA	1 cut(s)	815
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	630
Mox20I	TGGCCA	1 cut(s)	815
Mph1103I	ATGCAT	1 cut(s)	719
MroI	TCCGGA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	2 cut(s)	351, 506
MslI	CAYNNNNRTG	2 cut(s)	207, 801
Msp20I	TGGCCA	1 cut(s)	815
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	259, 425
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	2 cut(s)	377, 912
Mva1269I	GAATGC	1 cut(s)	47
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	103, 313, 575, 821
NciI	CCSGG	1 cut(s)	425
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	5 cut(s)	190, 232, 238, 828, 832
NlaIII	CATG	4 cut(s)	206, 368, 728, 800
NlaIV	GGNNCC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	719
NspI	RCATGY	2 cut(s)	368, 800
PagI	TCATGA	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	828
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	5 cut(s)	130, 169, 227, 602, 769
PkrI	GCNGC	4 cut(s)	298, 571, 574, 577
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	572
RseI	CAYNNNNRTG	2 cut(s)	207, 801
SaqAI	TTAA	2 cut(s)	351, 506
SatI	GCNGC	4 cut(s)	297, 570, 573, 576
Sau3AI	GATC	5 cut(s)	190, 232, 238, 828, 832
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	108, 637
SfaNI	GCATC	2 cut(s)	303, 318
SfcI	CTRYAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	207, 801
Sse9I	AATT	7 cut(s)	182, 377, 460, 513, 702, 912, 933
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	118, 791
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	6 cut(s)	54, 91, 172, 235, 272, 831
TasI	AATT	7 cut(s)	182, 377, 460, 513, 702, 912, 933
TfiI	GAWTC	5 cut(s)	130, 169, 227, 602, 769
Tru1I	TTAA	2 cut(s)	351, 506
Tru9I	TTAA	2 cut(s)	351, 506
TscAI	CASTG	3 cut(s)	121, 765, 796
TseI	GCWGC	4 cut(s)	296, 569, 572, 575
TspDTI	ATGAA	2 cut(s)	40, 698
TspGWI	ACGGA	2 cut(s)	329, 883
TspRI	CASTG	3 cut(s)	121, 765, 796
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	2 cut(s)	368, 800
XspI	CTAG	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.