Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001451

Physical Location & Seq

Genomic Coordinates Reverse (-)

47627825 .. 47630192

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGACTGATCCTGTTGTCTTGGCCACTGGACAGACTTATGATAGGCCATTCATCCAGAGGTTGTTGAATGAAGGCAGCCGGACATGCCCTCAGACCAAGCAAGTCCTTGCTCACACTATCCTGACCCCAAATAACTTGGTCCAAGAAATGATTTCACAATGGTGCAAGGAGCATGGTATTGAGTCTCCGAAACCTGTTCAGGATACTGGTGAGGAAGTTGTCACCAACGCAGACCGAAACTATCTGACTGCACTGCTCAATAAGACTTCATCATCATCCCTGGCTGATCAGAAAGCAGCAGCAAAGGAACTTCGGCTGCTAACAAAGAGGAGTTCATCATTTCGGGCATTGTTTGGCGAGTCTGCTGAGATCATTCCACAACTGCTGAGTCCACTTTCACAAGGCCAGGTTGCCACTCATCCTGATCTTCAAGAAGACTTGATCACGACTCTACTAAACCTTTCGATTCATGACAACAATAAGAGATTAGTTGCTGAAAACCCCTTGGTGATCCCTCTCCTAATTGATTCCTTAATATCTGGAACAATTCAAACAAAAAGCAATGCTGCTGCAACTTTCTTCACACTATCAGCCATCGATTCCAGCAAGATTGTTATCGGAACATCTGGTGCTCTTAAACCTTTGATTGACCTGTTGCATGAGGGGCATCCATTAGCCATGAAGGATGTTGCTACGGCCATATTCCGCCTATGTACAGACCTTGAAAATAGAGGAAGAGCCGTCAATGCTGGAGTGGTGTGGGTGATTCTGAATAAGATAATGGATGGTGTATTGGTCGCTGAGTTGCTGGCTATACTCGCAATAATTTCAACCAATCAGAAGGCTATTCAGGAAATGTGTGAGCTTGGCGCTGTGTCTTGCTTGATTAGGATCATGAGGGAGAGTGATTGTGAGCGTGACAAGGAGAACTGCATCGTAATCCTTTACAATATCTGCTTTAGTGGTCGCTCCAAATTGAAGGAGATTAAGGACGAGGAAATGGCAAATGGTACATTTTCTAGACTTGCACAGAGTGGAACTTCAAGAGCTAAGAGGAAAGCCATTGGAATTCTTGAGAGGTTGAATAAAACTGGTTCAGTAACACACACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

371

Amino Acids

40.54

Weight (kDa)

7.04

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	1 - 58	1.8e-13	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360
fragaria_vesca	FvH4_2g18070 FvH4_6g01250
malus_domestica	MD04G1235600.v1.1 MD05G1165400.v1.1 MD10G1154600.v1.1 MD12G1253300.v1.1
prunus_persica	Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1
pyrus_communis	pycom04g20910 pycom05g15400 pycom10g09710 pycom10g13370 pycom12g23240
rosa_chinensis	RchiOBHm_Chr3g0448811 RchiOBHm_Chr6g0283461
rosa_laevigata	RLG00000012824 RLG00000025873
rosa_multiflora	Rmu_sc0003116.1_g000024 Rmu_sc0004959.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427030 Rroxscaffold_7G00185520
rosa_rugosa	Rorug02G0616500.1 Rorug02G0616600 Rorug06G0154400
rosa_samantha	Rh3AG014900 Rh3BG014700 Rh3CG013600 Rh3DG015200 Rh6AG266700 Rh6BG269200 Rh6CG269100 Rh6DG262500
rosa_wichuraiana	Rw3G001100 Rw6G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	706
AclWI	GGATC	3 cut(s)	2, 505, 899
AcoI	YGGCCR	2 cut(s)	21, 696
AcsI	RAATTY	1 cut(s)	1068
AdeI	CACNNNGTG	1 cut(s)	1034
AfaI	GTAC	2 cut(s)	715, 1012
AgsI	TTSAA	8 cut(s)	67, 431, 551, 725, 831, 979, 1044, 1084
AjnI	CCWGG	2 cut(s)	279, 405
AleI	CACNNNNGTG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	865, 1049
AluI	AGCT	2 cut(s)	865, 1049
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	3 cut(s)	2, 505, 899
AoxI	GGCC	4 cut(s)	21, 44, 403, 696
ApeKI	GCWGC	6 cut(s)	75, 296, 299, 316, 566, 569
ApoI	RAATTY	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	214, 221, 520, 775
AvaII	GGWCC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	6 cut(s)	87, 303, 308, 311, 553, 556
BccI	CCATC	2 cut(s)	602, 779
BceAI	ACGGC	2 cut(s)	711, 725
BciT130I	CCWGG	2 cut(s)	281, 407
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	2 cut(s)	286, 441
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	1020
BfoI	RGCGCY	1 cut(s)	873
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	6 cut(s)	76, 297, 300, 317, 567, 570
BlsI	GCNGC	6 cut(s)	77, 298, 301, 318, 568, 571
Bme1390I	CCNGG	2 cut(s)	281, 407
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	281, 407
BmsI	GCATC	2 cut(s)	676, 942
BpiI	GAAGAC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	1094
Bsa29I	ATCGAT	1 cut(s)	597
BsaBI	GATNNNNATC	2 cut(s)	614, 890
BsaJI	CCNNGG	2 cut(s)	279, 504
Bse1I	ACTGG	3 cut(s)	31, 211, 1096
Bse3DI	GCAATG	1 cut(s)	568
Bse8I	GATNNNNATC	2 cut(s)	614, 890
BseBI	CCWGG	2 cut(s)	281, 407
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	279, 504
BseGI	GGATG	6 cut(s)	51, 275, 418, 667, 691, 790
BseJI	GATNNNNATC	2 cut(s)	614, 890
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	4 cut(s)	104, 357, 377, 792
BseNI	ACTGG	3 cut(s)	31, 211, 1096
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	6 cut(s)	87, 303, 308, 311, 553, 556
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	23, 46, 405, 698
BshVI	ATCGAT	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	4 cut(s)	23, 46, 405, 698
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp1407I	TGTACA	1 cut(s)	713
Bsp143I	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
BspACI	CCGC	1 cut(s)	706
BspANI	GGCC	4 cut(s)	23, 46, 405, 698
BspCNI	CTCAG	4 cut(s)	103, 358, 378, 793
BspDI	ATCGAT	1 cut(s)	597
BspHI	TCATGA	2 cut(s)	469, 894
BspPI	GGATC	3 cut(s)	2, 505, 899
BspQI	GCTCTTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	31, 211, 1096
BssECI	CCNNGG	2 cut(s)	279, 504
BssMI	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	281, 407
Bst6I	CTCTTC	1 cut(s)	730
BstAUI	TGTACA	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	5 cut(s)	90, 366, 386, 801, 1050
BstF5I	GGATG	6 cut(s)	51, 275, 418, 667, 691, 790
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	7 cut(s)	10, 289, 372, 427, 444, 513, 894
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 664, 746, 818
BstNI	CCWGG	2 cut(s)	281, 407
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	279, 405
BstV1I	GCAGC	6 cut(s)	87, 303, 308, 311, 553, 556
BstV2I	GAAGAC	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	23, 46, 405, 698
BsuTUI	ATCGAT	1 cut(s)	597
BtsCI	GGATG	6 cut(s)	51, 275, 418, 667, 691, 790
BtsI	GCAGTG	2 cut(s)	251, 1107
BtsIMutI	CAGTG	3 cut(s)	24, 251, 1107
Cac8I	GCNNGC	1 cut(s)	810
CciI	TCATGA	2 cut(s)	469, 894
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	714, 1011
CviAII	CATG	6 cut(s)	84, 173, 470, 659, 679, 895
CviQI	GTAC	2 cut(s)	714, 1011
DdeI	CTNAG	5 cut(s)	90, 366, 386, 801, 1050
DpnI	GATC	7 cut(s)	9, 288, 371, 426, 443, 512, 893
DpnII	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
DraIII	CACNNNGTG	1 cut(s)	1034
EaeI	YGGCCR	2 cut(s)	21, 696
Eam1104I	CTCTTC	1 cut(s)	730
EarI	CTCTTC	1 cut(s)	730
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	1068
EcoRII	CCWGG	2 cut(s)	279, 405
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	6 cut(s)	87, 176, 473, 662, 682, 898
FatI	CATG	6 cut(s)	83, 172, 469, 658, 678, 894
FbaI	TGATCA	2 cut(s)	286, 441
Fnu4HI	GCNGC	6 cut(s)	76, 297, 300, 317, 567, 570
FokI	GGATG	6 cut(s)	38, 262, 405, 654, 698, 797
Fsp4HI	GCNGC	6 cut(s)	76, 297, 300, 317, 567, 570
FspBI	CTAG	1 cut(s)	1020
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	6 cut(s)	76, 297, 300, 317, 567, 570
GsuI	CTGGAG	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	873
HaeIII	GGCC	4 cut(s)	23, 46, 405, 698
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	872
Hin1II	CATG	6 cut(s)	87, 176, 473, 662, 682, 898
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HinfI	GANTC	8 cut(s)	182, 359, 388, 448, 466, 527, 599, 766
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	4 cut(s)	214, 221, 520, 775
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	7 cut(s)	93, 189, 246, 291, 620, 771, 840
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	4 cut(s)	65, 676, 835, 973
HpyCH4V	TGCA	6 cut(s)	165, 251, 572, 658, 933, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 664, 746, 818
HpyF3I	CTNAG	5 cut(s)	90, 366, 386, 801, 1050
Hsp92II	CATG	6 cut(s)	87, 176, 473, 662, 682, 898
HspAI	GCGC	1 cut(s)	870
Ksp22I	TGATCA	2 cut(s)	286, 441
Kzo9I	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
LguI	GCTCTTC	1 cut(s)	730
LmnI	GCTCC	2 cut(s)	169, 974
Lsp1109I	GCAGC	6 cut(s)	87, 303, 308, 311, 553, 556
LweI	GCATC	2 cut(s)	676, 942
MaeI	CTAG	1 cut(s)	1020
MaeIII	GTNAC	3 cut(s)	220, 917, 1099
MalI	GATC	7 cut(s)	9, 288, 371, 426, 443, 512, 893
MboI	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
MboII	GAAGA	4 cut(s)	419, 446, 571, 747
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	5 cut(s)	522, 546, 825, 974, 1068
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	4 cut(s)	191, 368, 397, 442
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	3 cut(s)	533, 636, 987
MslI	CAYNNNNRTG	1 cut(s)	160
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	281, 407
MvaI	CCWGG	2 cut(s)	281, 407
MwoI	GCNNNNNNNGC	4 cut(s)	84, 664, 746, 818
NdeII	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
NlaIII	CATG	6 cut(s)	87, 176, 473, 662, 682, 898
NmuCI	GTSAC	2 cut(s)	220, 917
NspI	RCATGY	1 cut(s)	87
OliI	CACNNNNGTG	1 cut(s)	160
PagI	TCATGA	2 cut(s)	469, 894
PciSI	GCTCTTC	1 cut(s)	730
PfeI	GAWTC	4 cut(s)	466, 527, 599, 766
PkrI	GCNGC	6 cut(s)	77, 298, 301, 318, 568, 571
PleI	GAGTC	4 cut(s)	190, 367, 396, 442
PpsI	GAGTC	4 cut(s)	190, 367, 396, 442
Psp6I	CCWGG	2 cut(s)	279, 405
PspGI	CCWGG	2 cut(s)	279, 405
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	715, 1012
RsaNI	GTAC	2 cut(s)	714, 1011
RseI	CAYNNNNRTG	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	730
SaqAI	TTAA	3 cut(s)	533, 636, 987
SatI	GCNGC	6 cut(s)	76, 297, 300, 317, 567, 570
Sau3AI	GATC	7 cut(s)	7, 286, 369, 424, 441, 510, 891
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	4 cut(s)	191, 368, 397, 442
ScrFI	CCNGG	2 cut(s)	281, 407
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	2 cut(s)	676, 942
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
Sse9I	AATT	5 cut(s)	522, 546, 825, 974, 1068
SsiI	CCGC	1 cut(s)	706
SspMI	CTAG	1 cut(s)	1020
StyD4I	CCNGG	2 cut(s)	279, 405
StyI	CCWWGG	1 cut(s)	504
TaqI	TCGA	2 cut(s)	464, 597
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	522, 546, 825, 974, 1068
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	4 cut(s)	466, 527, 599, 766
Tru1I	TTAA	3 cut(s)	533, 636, 987
Tru9I	TTAA	3 cut(s)	533, 636, 987
TscAI	CASTG	3 cut(s)	31, 258, 1114
TseFI	GTSAC	2 cut(s)	220, 917
TseI	GCWGC	6 cut(s)	75, 296, 299, 316, 566, 569
Tsp45I	GTSAC	2 cut(s)	220, 917
TspDTI	ATGAA	6 cut(s)	40, 84, 258, 324, 458, 695
TspRI	CASTG	3 cut(s)	31, 258, 1114
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	1068
XbaI	TCTAGA	1 cut(s)	1019
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.