Prupe.8G193500_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
18681775 .. 18684557
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G193500.5

Sequence Viewer

Length: 1539 bp
ATGGCCAAGACTGGCGTGTTTGATTCTGATCCGGCTATGGTGGCCAAAGCCACAGAATTGAAGAAGGAGCTGCAGAGGCTGGTGAGGGCTATTGTTGACGACGAGGATTTCAGCACCCAAACAATCGATCAGGCCAAAGACACTCTCTCGGCTCTCAAGGAATTGAAGTTCAAAAAGAGATCGCTGTCTCTGAAGCTGAATGATGTTCTTTCTTGCCCTGAAGAGTTTCGATGTCCGCTTTCCAAGGAGTTGATGAGAGACCCTGTGATTGTTTCTACAGGCGAGTTTCTGCAATCTCCCTTCATCTTCTGTTTTGTTGGGCTGAGAAAATGTCGGCAAGGAAAAGATCTTAGATTCTTTATGCATTTGAAGTTTTTATTTTGTTTTCCTTTCACTTTCTCAGCAACCAAACGGAGCTCTGAGGATTTAATTTGTGTGGTACGTAAAAGGAAGACATATGATAGACCATTCATCCAAAAAGGGCTAAAGGCGGGCAACAGGATATGCCCTCGAACCCAACAAGTACTCTCACACACAATCCTTACTCCCAATCACTTGGTTCGTGAAATGATATCGCAATGGTGTAAGAATAGAGGGATTGAATTGTCGGATCCTGTTCTCCTTGTCAATGAGGATGGTATAACAGAATCGGAACGAGACCATTTTCTTTCTTTGCTCCAGAAGATGTCTTCTGGATTGCCTGAGCAGAAAGAAGCTGCAAAGGAGCTTCGGTCGTTGACAAAGAGGATGCCTTCTTTCCGGGCACTTTTTGGTGAGTCTATACATGCCATCCCTCAACTGCTCAGTCCACTATCTGAAGGCAAGTTTGAAGATGGTATTCACCCGGAACTCCAAGAAGATGTGATCACAACGCTCTTGAATCTTTCAATCCATGACAACAACAAGAAGCATGTGGCAGAAAGTCCAATGGTAATTCCTTTACTAATTGAAGCATTGCAATCAGGAACCATTCAAACAAGGAGCAATGCAGCAGCAGCCCTTTTCACTTTGTCAGCTCTGGATTCCAACAAGGCACTTATTGGGAAATCCGGTGCCCTAAAACCCCTCATCGCCCTCCTAGATGAGGGGCATCCATTAGCTATGAAAGATGTTGCTTCTGCAATTTTCAACCTATGCATCACCCATGAGAACAAGGCAAGAGCTGTGAGAGATGGGGCAGTGAGGACGATTCTGAAGAAGATAAGAAACCGTATGCATGTTGATGAGTTGTTGGCCATCCTTGCAATGCTCTCAAGCCATCCCAAGGCTGTGGAGGAAATGGGAGAGCTTGGAGCCGTTCCTTGCTTGCTCCGTGTTATCAGGGAGACCAATTGCGGACGCAACAAGGAGAATTGCATTGCAGTCCTTCACACAATCTGTTTAAACGATCGAACCAAGTGGAAGGAAATTCGGGAAGAAGAGAACACGTACGGAACAATATCTGAGCTTGCACAGAATGGGACTTCAAGGTCTAAGAGGAAAGCTAGTGGCATTCTTGATAGACTGAACAGGACTGTAAATCTCACACATACTGCATGA

Protein Analysis

513

Amino Acids

57.47

Weight (kDa)

9.1

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1468
AccB1I GGYRCC 1 cut(s) 1052
AciI CCGC 3 cut(s) 236, 491, 1335
AclWI GGATC 3 cut(s) 23, 605, 618
AcoI YGGCCR 3 cut(s) 3, 42, 1233
AcsI RAATTY 1 cut(s) 1407
AcuI CTGAAG 4 cut(s) 212, 240, 837, 1214
AfaI GTAC 3 cut(s) 441, 525, 1430
AfiI CCNNNNNNNGG 2 cut(s) 1084, 1264
AflIII ACRYGT 1 cut(s) 1425
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 4 cut(s) 192, 252, 651, 1319
AlwI GGATC 3 cut(s) 23, 605, 618
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 4 cut(s) 3, 42, 132, 1233
ApeKI GCWGC 5 cut(s) 70, 716, 989, 992, 995
ApoI RAATTY 1 cut(s) 1407
Asp700I GAANNNNTTC 1 cut(s) 225
AsuC2I CCSGG 2 cut(s) 761, 845
AsuHPI GGTGA 4 cut(s) 94, 785, 833, 1132
BaeGI GKGCMC 2 cut(s) 766, 1057
BalI TGGCCA 3 cut(s) 5, 44, 1235
BamHI GGATCC 1 cut(s) 610
BanI GGYRCC 1 cut(s) 1052
BanII GRGCYC 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 458, 681
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 5 cut(s) 57, 703, 1001, 1004, 1007
BccI CCATC 6 cut(s) 629, 797, 827, 1166, 1244, 1266
BceAI ACGGC 1 cut(s) 1280
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 2 cut(s) 761, 845
BcoDI GTCTC 4 cut(s) 192, 252, 651, 1319
BfaI CTAG 2 cut(s) 1079, 1485
BfmI CTRYAG 2 cut(s) 71, 276
BglII AGATCT 1 cut(s) 346
BisI GCNGC 5 cut(s) 71, 717, 990, 993, 996
BlsI GCNGC 5 cut(s) 72, 718, 991, 994, 997
BmcAI AGTACT 1 cut(s) 525
Bme1390I CCNGG 2 cut(s) 761, 845
BmiI GGNNCC 4 cut(s) 612, 967, 1054, 1294
BmrFI CCNGG 2 cut(s) 761, 845
BmsI GCATC 3 cut(s) 738, 1099, 1146
BpiI GAAGAC 2 cut(s) 458, 681
BpmI CTGGAG 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 140, 1237
BpuMI CCSGG 2 cut(s) 761, 845
Bsa29I ATCGAT 1 cut(s) 126
BsaAI YACGTR 2 cut(s) 443, 1428
BsaBI GATNNNNATC 1 cut(s) 27
BsaI GGTCTC 3 cut(s) 252, 651, 1319
BsaJI CCNNGG 2 cut(s) 243, 1263
BsaWI WCCGGW 1 cut(s) 1049
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 1084, 1264
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 5 cut(s) 584, 953, 991, 1251, 1356
Bse8I GATNNNNATC 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 243, 1263
BseGI GGATG 7 cut(s) 471, 640, 753, 789, 1090, 1236, 1258
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 1084, 1264
BseMI GCAATG 5 cut(s) 584, 953, 991, 1251, 1356
BseMII CTCAG 6 cut(s) 314, 411, 414, 693, 817, 1434
BseNI ACTGG 1 cut(s) 16
BseSI GKGCMC 2 cut(s) 766, 1057
BseXI GCAGC 5 cut(s) 57, 703, 1001, 1004, 1007
Bsh1285I CGRYCG 2 cut(s) 734, 1390
BshFI GGCC 4 cut(s) 5, 44, 134, 1235
BshNI GGYRCC 1 cut(s) 1052
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 2 cut(s) 734, 1390
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 4 cut(s) 32, 760, 845, 1050
BsiWI CGTACG 1 cut(s) 1428
BslFI GGGAC 1 cut(s) 1474
BslI CCNNNNNNNGG 2 cut(s) 1084, 1264
BsmAI GTCTC 4 cut(s) 192, 252, 651, 1319
BsmFI GGGAC 1 cut(s) 1474
BsmI GAATGC 1 cut(s) 1491
BsnI GGCC 4 cut(s) 5, 44, 134, 1235
Bso31I GGTCTC 3 cut(s) 252, 651, 1319
Bsp1286I GDGCHC 3 cut(s) 419, 766, 1057
Bsp143I GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
BspACI CCGC 3 cut(s) 236, 491, 1335
BspANI GGCC 4 cut(s) 5, 44, 134, 1235
BspCNI CTCAG 6 cut(s) 315, 412, 413, 694, 816, 1435
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 612, 967, 1054, 1294
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 3 cut(s) 23, 605, 618
BspT107I GGYRCC 1 cut(s) 1052
BspTNI GGTCTC 3 cut(s) 252, 651, 1319
BsrDI GCAATG 5 cut(s) 584, 953, 991, 1251, 1356
BsrI ACTGG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 243, 1263
BssMI GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
BssT1I CCWWGG 2 cut(s) 243, 1263
Bst4CI ACNGT 2 cut(s) 1211, 1516
Bst6I CTCTTC 2 cut(s) 216, 1413
BstBAI YACGTR 2 cut(s) 443, 1428
BstC8I GCNNGC 3 cut(s) 493, 1307, 1449
BstDEI CTNAG 8 cut(s) 323, 350, 400, 420, 702, 803, 1443, 1473
BstENI CCTNNNNNAGG 1 cut(s) 1082
BstF5I GGATG 7 cut(s) 471, 640, 753, 789, 1090, 1236, 1258
BstKTI GATC 7 cut(s) 31, 130, 182, 349, 613, 867, 1390
BstMAI GTCTC 4 cut(s) 192, 252, 651, 1319
BstMBI GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
BstMCI CGRYCG 2 cut(s) 734, 1390
BstMWI GCNNNNNNNGC 4 cut(s) 41, 76, 995, 1241
BstNSI RCATGY 3 cut(s) 788, 914, 1220
BstSCI CCNGG 2 cut(s) 759, 843
BstSFI CTRYAG 2 cut(s) 71, 276
BstSLI GKGCMC 2 cut(s) 766, 1057
BstSNI TACGTA 1 cut(s) 443
BstV1I GCAGC 5 cut(s) 57, 703, 1001, 1004, 1007
BstV2I GAAGAC 2 cut(s) 458, 681
BstX2I RGATCY 2 cut(s) 346, 610
BstXI CCANNNNNNTGG 2 cut(s) 556, 1270
BstYI RGATCY 2 cut(s) 346, 610
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 4 cut(s) 5, 44, 134, 1235
BsuTUI ATCGAT 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 1054
BtsCI GGATG 7 cut(s) 471, 640, 753, 789, 1090, 1236, 1258
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 1 cut(s) 1185
Cac8I GCNNGC 3 cut(s) 493, 1307, 1449
CaiI CAGNNNCTG 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 1347
Csp6I GTAC 3 cut(s) 440, 524, 1429
CviAII CATG 6 cut(s) 785, 893, 911, 1145, 1217, 1536
CviQI GTAC 3 cut(s) 440, 524, 1429
DdeI CTNAG 8 cut(s) 323, 350, 400, 420, 702, 803, 1443, 1473
DpnI GATC 7 cut(s) 30, 129, 181, 348, 612, 866, 1389
DpnII GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
DraI TTTAAA 1 cut(s) 1383
DrdI GACNNNNNNGTC 1 cut(s) 1468
DseDI GACNNNNNNGTC 1 cut(s) 1468
EaeI YGGCCR 3 cut(s) 3, 42, 1233
Eam1104I CTCTTC 2 cut(s) 216, 1413
EarI CTCTTC 2 cut(s) 216, 1413
Ecl136II GAGCTC 1 cut(s) 417
Eco105I TACGTA 1 cut(s) 443
Eco130I CCWWGG 2 cut(s) 243, 1263
Eco24I GRGCYC 1 cut(s) 419
Eco31I GGTCTC 3 cut(s) 252, 651, 1319
Eco32I GATATC 1 cut(s) 573
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 4 cut(s) 212, 240, 837, 1214
EcoICRI GAGCTC 1 cut(s) 417
EcoNI CCTNNNNNAGG 1 cut(s) 1082
EcoRV GATATC 1 cut(s) 573
EcoT14I CCWWGG 2 cut(s) 243, 1263
EcoT22I ATGCAT 3 cut(s) 366, 1139, 1218
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 2 cut(s) 243, 1263
FaeI CATG 6 cut(s) 788, 896, 914, 1148, 1220, 1539
FaqI GGGAC 1 cut(s) 1474
FatI CATG 6 cut(s) 784, 892, 910, 1144, 1216, 1535
FauI CCCGC 1 cut(s) 484
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 5 cut(s) 71, 717, 990, 993, 996
FokI GGATG 7 cut(s) 458, 647, 760, 776, 1077, 1223, 1245
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 5 cut(s) 71, 717, 990, 993, 996
FspBI CTAG 2 cut(s) 1079, 1485
GluI GCNGC 5 cut(s) 71, 717, 990, 993, 996
GsuI CTGGAG 1 cut(s) 662
HaeIII GGCC 4 cut(s) 5, 44, 134, 1235
HapII CCGG 4 cut(s) 32, 760, 845, 1050
HgaI GACGC 1 cut(s) 1347
Hin1II CATG 6 cut(s) 788, 896, 914, 1148, 1220, 1539
HincII GTYRAC 2 cut(s) 97, 738
HindII GTYRAC 2 cut(s) 97, 738
HinfI GANTC 7 cut(s) 23, 354, 647, 776, 880, 1022, 1189
HpaII CCGG 4 cut(s) 32, 760, 845, 1050
HphI GGTGA 4 cut(s) 94, 785, 833, 1132
Hpy166II GTNNAC 3 cut(s) 97, 738, 809
Hpy188I TCNGA 8 cut(s) 28, 192, 421, 610, 652, 817, 1194, 1444
Hpy188III TCNNGA 8 cut(s) 563, 679, 693, 877, 963, 1019, 1412, 1496
Hpy8I GTNNAC 3 cut(s) 97, 738, 809
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 6 cut(s) 58, 310, 762, 812, 1376, 1396
HpyCH4III ACNGT 2 cut(s) 1211, 1516
HpyCH4IV ACGT 2 cut(s) 442, 1427
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 76, 995, 1241
HpyF3I CTNAG 8 cut(s) 323, 350, 400, 420, 702, 803, 1443, 1473
HpySE526I ACGT 2 cut(s) 442, 1427
Hsp92II CATG 6 cut(s) 788, 896, 914, 1148, 1220, 1539
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
LmnI GCTCC 7 cut(s) 67, 414, 681, 724, 981, 1292, 1314
Lsp1109I GCAGC 5 cut(s) 57, 703, 1001, 1004, 1007
LweI GCATC 3 cut(s) 738, 1099, 1146
MaeI CTAG 2 cut(s) 1079, 1485
MaeII ACGT 2 cut(s) 442, 1427
MalI GATC 7 cut(s) 30, 129, 181, 348, 612, 866, 1389
MboI GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
MfeI CAATTG 1 cut(s) 1330
MflI RGATCY 2 cut(s) 346, 610
MhlI GDGCHC 3 cut(s) 419, 766, 1057
MlsI TGGCCA 3 cut(s) 5, 44, 1235
MluNI TGGCCA 3 cut(s) 5, 44, 1235
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 2 cut(s) 588, 1050
Mox20I TGGCCA 3 cut(s) 5, 44, 1235
Mph1103I ATGCAT 3 cut(s) 366, 1139, 1218
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 3 cut(s) 5, 44, 1235
MseI TTAA 2 cut(s) 428, 1382
MslI CAYNNNNRTG 1 cut(s) 1221
Msp20I TGGCCA 3 cut(s) 5, 44, 1235
MspI CCGG 4 cut(s) 32, 760, 845, 1050
MspR9I CCNGG 2 cut(s) 761, 845
MssI GTTTAAAC 1 cut(s) 1383
MunI CAATTG 1 cut(s) 1330
Mva1269I GAATGC 1 cut(s) 1491
MwoI GCNNNNNNNGC 4 cut(s) 41, 76, 995, 1241
NciI CCSGG 2 cut(s) 761, 845
NdeI CATATG 1 cut(s) 457
NdeII GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
NlaIII CATG 6 cut(s) 788, 896, 914, 1148, 1220, 1539
NlaIV GGNNCC 4 cut(s) 612, 967, 1054, 1294
NmeAIII GCCGAG 1 cut(s) 128
NsiI ATGCAT 3 cut(s) 366, 1139, 1218
NspI RCATGY 3 cut(s) 788, 914, 1220
PctI GAATGC 1 cut(s) 1491
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 6 cut(s) 23, 354, 647, 880, 1022, 1189
Pfl23II CGTACG 1 cut(s) 1428
PkrI GCNGC 5 cut(s) 72, 718, 991, 994, 997
Ple19I CGATCG 1 cut(s) 1390
PleI GAGTC 1 cut(s) 784
PmeI GTTTAAAC 1 cut(s) 1383
PpsI GAGTC 1 cut(s) 784
Ppu21I YACGTR 2 cut(s) 443, 1428
Psp124BI GAGCTC 1 cut(s) 419
PspLI CGTACG 1 cut(s) 1428
PspN4I GGNNCC 4 cut(s) 612, 967, 1054, 1294
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 346, 610
PvuI CGATCG 1 cut(s) 1390
RsaI GTAC 3 cut(s) 441, 525, 1430
RsaNI GTAC 3 cut(s) 440, 524, 1429
RseI CAYNNNNRTG 1 cut(s) 1221
SacI GAGCTC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 428, 1382
SatI GCNGC 5 cut(s) 71, 717, 990, 993, 996
Sau3AI GATC 7 cut(s) 28, 127, 179, 346, 610, 864, 1387
ScaI AGTACT 1 cut(s) 525
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 2 cut(s) 761, 845
SduI GDGCHC 3 cut(s) 419, 766, 1057
SfaNI GCATC 3 cut(s) 738, 1099, 1146
SfcI CTRYAG 2 cut(s) 71, 276
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 2 cut(s) 155, 1252
SmoI CTYRAG 2 cut(s) 155, 1252
SnaBI TACGTA 1 cut(s) 443
SsiI CCGC 3 cut(s) 236, 491, 1335
SspMI CTAG 2 cut(s) 1079, 1485
SstI GAGCTC 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 759, 843
StyI CCWWGG 2 cut(s) 243, 1263
TaaI ACNGT 2 cut(s) 1211, 1516
TaiI ACGT 2 cut(s) 445, 1430
TaqI TCGA 4 cut(s) 126, 229, 511, 1390
TaqII GACCGA 1 cut(s) 720
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 6 cut(s) 23, 354, 647, 880, 1022, 1189
Tru1I TTAA 2 cut(s) 428, 1382
Tru9I TTAA 2 cut(s) 428, 1382
TscAI CASTG 1 cut(s) 1185
TseI GCWGC 5 cut(s) 70, 716, 989, 992, 995
TspDTI ATGAA 3 cut(s) 292, 460, 1118
TspGWI ACGGA 3 cut(s) 427, 1301, 1446
TspRI CASTG 1 cut(s) 1185
XagI CCTNNNNNAGG 1 cut(s) 1082
XapI RAATTY 1 cut(s) 1407
XceI RCATGY 3 cut(s) 788, 914, 1220
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 1079, 1485
ZrmI AGTACT 1 cut(s) 525
Zsp2I ATGCAT 3 cut(s) 366, 1139, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.