Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001451

Physical Location & Seq

Genomic Coordinates Forward (+)

48853850 .. 48855672

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATTTCACAATGGTGCAAGGAGCATGGTATTGAGTCTCCAAAACCTGTTCAGGATACTGGTGAGGAAGTTGTCACCAACGCAGACCGAAACTATCTGAATGCACTGCTCAATAAGACTTCATCATCATCCCTGGCTGATCAGAAAGAAGCAGCAAAGGAACTTCGGCTGCTGACAAAGAGGAGTTCATCATTTCGGGCATTGTTTGGCGAGTCTGCTGAGATCATTCCACAACTGCTGAGTCCACTTTCACAAGGCCAGGTTGCCACTCATCCTGACCTTCAAGAAGACTTGATCACGACTCTATTAAACCTTTCGATTCATGACAACAATAAGAGATTAGTTGCTGAAAACCCCTTGGTGATCCCTCTCCTTATTGATTCCTTAATATCTGGAACAATTCAAACAAAAAGCAATGCTGCTGCAACTTTCTTCACACTATCAGCCATCGATTCCAGCAAGATTGTTATCGGAACATCTGGTGCTCTCAAACCTTTGATTGACCTGTTGCATGAGGGGCATCCATTAGCCATGAAGGATGTTGCTACGGCCATATTCCGCCTGTGTACAGACCTTGAAAATAGAGGAAGAGCCGTCAATGCTGGAATGGTGTGGGTGATTCTGAATAAGATAATGGATGGCGTATTGGTCGCTGAGTTGCTGGCTATACTCGCAATAATTTCAACCAATCAGAAGGCTATTCAGGAAATGTGTGAGCTTGGCGCTGTGTCTTGCTTGATTAGGATCATAAGGGAGAGTGATTGTGAGCGTGACAAGGAGAACTGCATCGTAATCCTTTACAATATCTGCTTTAGTGGTCGCTCCAAATTGAAGGAGATTAAGGACGAGGAAATGGCAAATGGTACATTTTCTAGACTTGCACAGAGTGGAACTTCAAGAGCTAAGAGGAAAGCCATTGGAATTCTTGAGAGGTTGAATAAAACTGGTTCAGTAACACACACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

323

Amino Acids

35.13

Weight (kDa)

6.61

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	34 - 207	7.1e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360
fragaria_vesca	FvH4_2g18070 FvH4_6g01250
malus_domestica	MD04G1235600.v1.1 MD05G1165400.v1.1 MD10G1154600.v1.1 MD12G1253300.v1.1
prunus_persica	Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1
pyrus_communis	pycom04g20910 pycom05g15400 pycom10g09710 pycom10g13370 pycom12g23240
rosa_chinensis	RchiOBHm_Chr3g0448811 RchiOBHm_Chr6g0283461
rosa_laevigata	RLG00000012824 RLG00000025873
rosa_multiflora	Rmu_sc0003116.1_g000024 Rmu_sc0004959.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427030 Rroxscaffold_7G00185520
rosa_rugosa	Rorug02G0616500.1 Rorug02G0616600 Rorug06G0154400
rosa_samantha	Rh3AG014900 Rh3BG014700 Rh3CG013600 Rh3DG015200 Rh6AG266700 Rh6BG269200 Rh6CG269100 Rh6DG262500
rosa_wichuraiana	Rw3G001100 Rw6G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	559
AclWI	GGATC	2 cut(s)	358, 752
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	921
AdeI	CACNNNGTG	1 cut(s)	887
AfaI	GTAC	2 cut(s)	568, 865
AgsI	TTSAA	7 cut(s)	284, 404, 578, 684, 832, 897, 937
AjnI	CCWGG	2 cut(s)	132, 258
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	718, 902
AluI	AGCT	2 cut(s)	718, 902
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	358, 752
AoxI	GGCC	2 cut(s)	256, 549
ApeKI	GCWGC	4 cut(s)	152, 169, 419, 422
ApoI	RAATTY	1 cut(s)	921
AspLEI	GCGC	1 cut(s)	725
AsuHPI	GGTGA	4 cut(s)	67, 74, 373, 628
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	4 cut(s)	156, 164, 406, 409
BccI	CCATC	2 cut(s)	455, 632
BceAI	ACGGC	2 cut(s)	564, 578
BciT130I	CCWGG	2 cut(s)	134, 260
BciVI	GTATCC	1 cut(s)	49
BclI	TGATCA	2 cut(s)	139, 294
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	873
BfoI	RGCGCY	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	4 cut(s)	153, 170, 420, 423
BlsI	GCNGC	4 cut(s)	154, 171, 421, 424
Bme1390I	CCNGG	2 cut(s)	134, 260
BmrFI	CCNGG	2 cut(s)	134, 260
BmsI	GCATC	2 cut(s)	529, 795
BpiI	GAAGAC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	947
Bsa29I	ATCGAT	1 cut(s)	450
BsaBI	GATNNNNATC	2 cut(s)	467, 743
BsaJI	CCNNGG	2 cut(s)	132, 357
Bse1I	ACTGG	2 cut(s)	64, 949
Bse3DI	GCAATG	1 cut(s)	421
Bse8I	GATNNNNATC	2 cut(s)	467, 743
BseBI	CCWGG	2 cut(s)	134, 260
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	132, 357
BseGI	GGATG	5 cut(s)	128, 271, 520, 544, 643
BseJI	GATNNNNATC	2 cut(s)	467, 743
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	3 cut(s)	210, 230, 645
BseNI	ACTGG	2 cut(s)	64, 949
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	4 cut(s)	156, 164, 406, 409
BshFI	GGCC	2 cut(s)	258, 551
BshVI	ATCGAT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	258, 551
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	5 cut(s)	139, 222, 294, 363, 744
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	2 cut(s)	258, 551
BspCNI	CTCAG	3 cut(s)	211, 231, 646
BspDI	ATCGAT	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	322
BspPI	GGATC	2 cut(s)	358, 752
BspQI	GCTCTTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	64, 949
BssECI	CCNNGG	2 cut(s)	132, 357
BssMI	GATC	5 cut(s)	139, 222, 294, 363, 744
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	134, 260
Bst6I	CTCTTC	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	4 cut(s)	219, 239, 654, 903
BstF5I	GGATG	5 cut(s)	128, 271, 520, 544, 643
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	5 cut(s)	142, 225, 297, 366, 747
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	5 cut(s)	139, 222, 294, 363, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	517, 599, 671
BstNI	CCWGG	2 cut(s)	134, 260
BstSCI	CCNGG	2 cut(s)	132, 258
BstV1I	GCAGC	4 cut(s)	156, 164, 406, 409
BstV2I	GAAGAC	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	258, 551
BsuTUI	ATCGAT	1 cut(s)	450
BtsCI	GGATG	5 cut(s)	128, 271, 520, 544, 643
BtsI	GCAGTG	2 cut(s)	104, 960
BtsIMutI	CAGTG	2 cut(s)	104, 960
Cac8I	GCNNGC	1 cut(s)	663
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	725
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	567, 864
CviAII	CATG	4 cut(s)	26, 323, 512, 532
CviQI	GTAC	2 cut(s)	567, 864
DdeI	CTNAG	4 cut(s)	219, 239, 654, 903
DpnI	GATC	5 cut(s)	141, 224, 296, 365, 746
DpnII	GATC	5 cut(s)	139, 222, 294, 363, 744
DraIII	CACNNNGTG	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	921
EcoRII	CCWGG	2 cut(s)	132, 258
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	4 cut(s)	29, 326, 515, 535
FaiI	YATR	7 cut(s)	27, 324, 513, 533, 554, 668, 749
FatI	CATG	4 cut(s)	25, 322, 511, 531
FbaI	TGATCA	2 cut(s)	139, 294
Fnu4HI	GCNGC	4 cut(s)	153, 170, 420, 423
FokI	GGATG	5 cut(s)	115, 258, 507, 551, 650
Fsp4HI	GCNGC	4 cut(s)	153, 170, 420, 423
FspBI	CTAG	1 cut(s)	873
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	4 cut(s)	153, 170, 420, 423
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	2 cut(s)	258, 551
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	4 cut(s)	29, 326, 515, 535
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HinfI	GANTC	8 cut(s)	35, 212, 241, 301, 319, 380, 452, 619
HphI	GGTGA	4 cut(s)	67, 74, 373, 628
Hpy166II	GTNNAC	2 cut(s)	245, 567
Hpy188I	TCNGA	5 cut(s)	99, 144, 473, 624, 693
Hpy8I	GTNNAC	2 cut(s)	245, 567
HpyAV	CCTTC	4 cut(s)	290, 529, 688, 826
HpyCH4V	TGCA	6 cut(s)	18, 104, 425, 511, 786, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	517, 599, 671
HpyF3I	CTNAG	4 cut(s)	219, 239, 654, 903
Hsp92II	CATG	4 cut(s)	29, 326, 515, 535
HspAI	GCGC	1 cut(s)	723
Ksp22I	TGATCA	2 cut(s)	139, 294
Kzo9I	GATC	5 cut(s)	139, 222, 294, 363, 744
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	22, 827
Lsp1109I	GCAGC	4 cut(s)	156, 164, 406, 409
LweI	GCATC	2 cut(s)	529, 795
MaeI	CTAG	1 cut(s)	873
MaeIII	GTNAC	3 cut(s)	73, 770, 952
MalI	GATC	5 cut(s)	141, 224, 296, 365, 746
MboI	GATC	5 cut(s)	139, 222, 294, 363, 744
MboII	GAAGA	3 cut(s)	299, 424, 600
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	4 cut(s)	399, 678, 827, 921
MlyI	GAGTC	4 cut(s)	44, 221, 250, 295
MnlI	CCTC	8 cut(s)	58, 174, 378, 508, 578, 841, 900, 924
MseI	TTAA	4 cut(s)	308, 386, 840, 967
MslI	CAYNNNNRTG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	134, 260
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	2 cut(s)	134, 260
MwoI	GCNNNNNNNGC	3 cut(s)	517, 599, 671
NdeII	GATC	5 cut(s)	139, 222, 294, 363, 744
NlaIII	CATG	4 cut(s)	29, 326, 515, 535
NmuCI	GTSAC	2 cut(s)	73, 770
OliI	CACNNNNGTG	1 cut(s)	13
PagI	TCATGA	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	583
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	319, 380, 452, 619
PkrI	GCNGC	4 cut(s)	154, 171, 421, 424
PleI	GAGTC	4 cut(s)	43, 220, 249, 295
PpsI	GAGTC	4 cut(s)	43, 220, 249, 295
Psp6I	CCWGG	2 cut(s)	132, 258
PspGI	CCWGG	2 cut(s)	132, 258
RsaI	GTAC	2 cut(s)	568, 865
RsaNI	GTAC	2 cut(s)	567, 864
RseI	CAYNNNNRTG	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	4 cut(s)	308, 386, 840, 967
SatI	GCNGC	4 cut(s)	153, 170, 420, 423
Sau3AI	GATC	5 cut(s)	139, 222, 294, 363, 744
SchI	GAGTC	4 cut(s)	44, 221, 250, 295
ScrFI	CCNGG	2 cut(s)	134, 260
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	529, 795
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	4 cut(s)	399, 678, 827, 921
SsiI	CCGC	1 cut(s)	559
SspMI	CTAG	1 cut(s)	873
StyD4I	CCNGG	2 cut(s)	132, 258
StyI	CCWWGG	1 cut(s)	357
TaqI	TCGA	2 cut(s)	317, 450
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	399, 678, 827, 921
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	319, 380, 452, 619
Tru1I	TTAA	4 cut(s)	308, 386, 840, 967
Tru9I	TTAA	4 cut(s)	308, 386, 840, 967
TscAI	CASTG	2 cut(s)	111, 967
TseFI	GTSAC	2 cut(s)	73, 770
TseI	GCWGC	4 cut(s)	152, 169, 419, 422
Tsp45I	GTSAC	2 cut(s)	73, 770
TspDTI	ATGAA	4 cut(s)	111, 177, 311, 548
TspRI	CASTG	2 cut(s)	111, 967
XapI	RAATTY	1 cut(s)	921
XbaI	TCTAGA	1 cut(s)	872
XspI	CTAG	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.