Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001451

Physical Location & Seq

Genomic Coordinates Reverse (-)

882808 .. 884710

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCCAGGACAGGTGTCTTGGCAGAGACTGATAAAGAAGCAGCCATGGAGATAAAGAAGCAGTTGGGGAAACTGGTCAAGGAGATTGTTGAAGAAGAAGACTACAGGATAGAGACTGCTGATGAGGCTATAAGGGCCTTGTCTTGTTTAAAGAACTTGCAGAGGTCTACAAAGTCTCTCTCTTTTAAACTTGGTGTTCTTGATGTTCCTCAAGAGTTTAGGTGTCCTATTTCTGGAGAGCTCATGACTGATCCTGTTGTCTTGGCCACTGGACAGACTTATGATAGGCCATTCATCCAGAGGTTGTTGAATGAAGGCAGCCGGACATGCCCTCAGACCAAGCAAGTCCTTGCTCACACTATCCTGACCCCAAATAACTTGGTCCAAGAAATGATTTCACAATGGTGCAAGGAGCATGGTATTGAGTCTCCGAAACCTGTTCAGGATACTGGTGAGGAAGTTGTCACCAAGGCAGACCGAAACTATCTGAATGCACTGCTCAACAAGACTTCATCATCATCCCTGGCTGATCAGAAAGAAGCAAGATTAGTTGCTGAAAACCCCTTGGTGATCCCTCTCCTTATTGATTCCTTAATATCTGGAACAATTCAAACAAAAAGCAATGCTGCTGCAACTTTCTTCACACTATCAGCCATCGATTCCAGCAAGATTGTTATCGGAACATCTGGTGCTCTCAAACCTTTGATTGACCTGTTGCATGAGGGGCATCCATTAGCCATGAAGGATGTTGCTACGGGCCATTTCCGCCTATGTACAGACCTTGAAAATAGAGGAAGAGCCGTCAATGCTGGAGTGGTGTGGGTGATTCTGAATAAGATAATGGATGGTGTATTGGTTGCTGAGTTGCTGGCTATACTCGCAATAATTTCAACCAATCAGAAGGCTATTCAGGAAATGTGTGAGCTTGGCGCTGTGTCTTGCTTGATTAGGATCATAAGGGAGAGTGATTGTGAGCGTGACAAGGAGAACTGCATCGTAATCCTTTACAATATCTGCTTTAGTGGTCGCTCCAAATTGAAGGAGATTAAGGACGAGGAAATGGTAAATGGTACATTTTCTAGACTTGCACAGAGTGGAACTTCAAGAGCTAAGAGGAAAGCCATTGGAATTCTTCAGAGGTTGAATAAAACTGGTTCAGTAACACACACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

391

Amino Acids

42.95

Weight (kDa)

7.0

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	69 - 139	5.5e-21	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360
fragaria_vesca	FvH4_2g18070 FvH4_6g01250
malus_domestica	MD04G1235600.v1.1 MD05G1165400.v1.1 MD10G1154600.v1.1 MD12G1253300.v1.1
prunus_persica	Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1
pyrus_communis	pycom04g20910 pycom05g15400 pycom10g09710 pycom10g13370 pycom12g23240
rosa_chinensis	RchiOBHm_Chr3g0448811 RchiOBHm_Chr6g0283461
rosa_laevigata	RLG00000012824 RLG00000025873
rosa_multiflora	Rmu_sc0003116.1_g000024 Rmu_sc0004959.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427030 Rroxscaffold_7G00185520
rosa_rugosa	Rorug02G0616500.1 Rorug02G0616600 Rorug06G0154400
rosa_samantha	Rh3AG014900 Rh3BG014700 Rh3CG013600 Rh3DG015200 Rh6AG266700 Rh6BG269200 Rh6CG269100 Rh6DG262500
rosa_wichuraiana	Rw3G001100 Rw6G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	3 cut(s)	245, 565, 959
AcoI	YGGCCR	2 cut(s)	3, 264
AcsI	RAATTY	1 cut(s)	1128
AcuI	CTGAAG	1 cut(s)	1118
AdeI	CACNNNGTG	1 cut(s)	1094
AfaI	GTAC	2 cut(s)	775, 1072
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	8 cut(s)	92, 310, 611, 785, 891, 1039, 1104, 1144
AjnI	CCWGG	2 cut(s)	5, 522
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	3 cut(s)	241, 925, 1109
AluI	AGCT	3 cut(s)	241, 925, 1109
Alw21I	GWGCWC	2 cut(s)	243, 694
Alw26I	GTCTC	4 cut(s)	20, 107, 180, 432
AlwI	GGATC	3 cut(s)	245, 565, 959
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	5 cut(s)	3, 135, 264, 287, 757
ApeKI	GCWGC	4 cut(s)	41, 318, 626, 629
ApoI	RAATTY	1 cut(s)	1128
AspLEI	GCGC	1 cut(s)	932
AspS9I	GGNCC	3 cut(s)	135, 382, 757
AsuHPI	GGTGA	4 cut(s)	457, 464, 580, 835
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	2 cut(s)	5, 266
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	2 cut(s)	243, 694
BbvI	GCAGC	4 cut(s)	53, 330, 613, 616
BccI	CCATC	2 cut(s)	662, 839
BceAI	ACGGC	1 cut(s)	785
BciT130I	CCWGG	2 cut(s)	7, 524
BciVI	GTATCC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	4 cut(s)	20, 107, 180, 432
BfaI	CTAG	1 cut(s)	1080
BfmI	CTRYAG	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	439
BisI	GCNGC	4 cut(s)	42, 319, 627, 630
BlsI	GCNGC	4 cut(s)	43, 320, 628, 631
Bme1390I	CCNGG	2 cut(s)	7, 524
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	3 cut(s)	135, 382, 757
BmrFI	CCNGG	2 cut(s)	7, 524
BmsI	GCATC	2 cut(s)	736, 1002
BoxI	GACNNNNGTC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	2 cut(s)	255, 831
BpuEI	CTTGAG	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	657
BsaBI	GATNNNNATC	2 cut(s)	674, 950
BsaJI	CCNNGG	4 cut(s)	45, 468, 522, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	4 cut(s)	78, 274, 454, 1156
Bse3DI	GCAATG	1 cut(s)	628
Bse8I	GATNNNNATC	2 cut(s)	674, 950
BseBI	CCWGG	2 cut(s)	7, 524
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	45, 468, 522, 564
BseGI	GGATG	5 cut(s)	294, 518, 727, 751, 850
BseJI	GATNNNNATC	2 cut(s)	674, 950
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	2 cut(s)	347, 852
BseNI	ACTGG	4 cut(s)	78, 274, 454, 1156
BseXI	GCAGC	4 cut(s)	53, 330, 613, 616
BshFI	GGCC	5 cut(s)	5, 137, 266, 289, 759
BshVI	ATCGAT	1 cut(s)	657
BsiHKAI	GWGCWC	2 cut(s)	243, 694
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	4 cut(s)	20, 107, 180, 432
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	5 cut(s)	5, 137, 266, 289, 759
Bsp1286I	GDGCHC	2 cut(s)	243, 694
Bsp1407I	TGTACA	1 cut(s)	773
Bsp143I	GATC	4 cut(s)	250, 529, 570, 951
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	766
BspANI	GGCC	5 cut(s)	5, 137, 266, 289, 759
BspCNI	CTCAG	2 cut(s)	346, 853
BspDI	ATCGAT	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	3 cut(s)	245, 565, 959
BspQI	GCTCTTC	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	773
BsrI	ACTGG	4 cut(s)	78, 274, 454, 1156
BssECI	CCNNGG	4 cut(s)	45, 468, 522, 564
BssMI	GATC	4 cut(s)	250, 529, 570, 951
BssT1I	CCWWGG	3 cut(s)	45, 468, 564
Bst2UI	CCWGG	2 cut(s)	7, 524
Bst6I	CTCTTC	1 cut(s)	790
BstAUI	TGTACA	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	870
BstDEI	CTNAG	3 cut(s)	333, 861, 1110
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	5 cut(s)	294, 518, 727, 751, 850
BstH2I	RGCGCY	1 cut(s)	933
BstHHI	GCGC	1 cut(s)	932
BstKTI	GATC	4 cut(s)	253, 532, 573, 954
BstMAI	GTCTC	4 cut(s)	20, 107, 180, 432
BstMBI	GATC	4 cut(s)	250, 529, 570, 951
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 134, 327, 724, 765, 806, 878
BstNI	CCWGG	2 cut(s)	7, 524
BstNSI	RCATGY	1 cut(s)	330
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	5, 522
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	53, 330, 613, 616
BstV2I	GAAGAC	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	5 cut(s)	5, 137, 266, 289, 759
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	5 cut(s)	294, 518, 727, 751, 850
BtsI	GCAGTG	2 cut(s)	494, 1167
BtsIMutI	CAGTG	3 cut(s)	267, 494, 1167
Cac8I	GCNNGC	1 cut(s)	870
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	932
Cfr13I	GGNCC	3 cut(s)	135, 382, 757
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	774, 1071
CviAII	CATG	6 cut(s)	46, 244, 327, 416, 719, 739
CviQI	GTAC	2 cut(s)	774, 1071
DdeI	CTNAG	3 cut(s)	333, 861, 1110
DpnI	GATC	4 cut(s)	252, 531, 572, 953
DpnII	GATC	4 cut(s)	250, 529, 570, 951
DraI	TTTAAA	2 cut(s)	150, 187
DraIII	CACNNNGTG	1 cut(s)	1094
EaeI	YGGCCR	2 cut(s)	3, 264
Eam1104I	CTCTTC	1 cut(s)	790
EarI	CTCTTC	1 cut(s)	790
EciI	GGCGGA	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	3 cut(s)	45, 468, 564
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	1118
EcoICRI	GAGCTC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	1128
EcoRII	CCWGG	2 cut(s)	5, 522
EcoT14I	CCWWGG	3 cut(s)	45, 468, 564
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	3 cut(s)	45, 468, 564
FaeI	CATG	6 cut(s)	49, 247, 330, 419, 722, 742
FatI	CATG	6 cut(s)	45, 243, 326, 415, 718, 738
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	4 cut(s)	42, 319, 627, 630
FokI	GGATG	5 cut(s)	281, 505, 714, 758, 857
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	4 cut(s)	42, 319, 627, 630
FspBI	CTAG	1 cut(s)	1080
GlaI	GCGC	1 cut(s)	931
GluI	GCNGC	4 cut(s)	42, 319, 627, 630
GsuI	CTGGAG	2 cut(s)	255, 831
HaeII	RGCGCY	1 cut(s)	933
HaeIII	GGCC	5 cut(s)	5, 137, 266, 289, 759
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	932
Hin1II	CATG	6 cut(s)	49, 247, 330, 419, 722, 742
Hin6I	GCGC	1 cut(s)	930
HinP1I	GCGC	1 cut(s)	930
HinfI	GANTC	4 cut(s)	425, 587, 659, 826
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	4 cut(s)	457, 464, 580, 835
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	8 cut(s)	336, 432, 489, 534, 680, 831, 900, 1137
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	4 cut(s)	308, 736, 895, 1033
HpyCH4V	TGCA	7 cut(s)	160, 408, 494, 632, 718, 993, 1088
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 134, 327, 724, 765, 806, 878
HpyF3I	CTNAG	3 cut(s)	333, 861, 1110
Hsp92II	CATG	6 cut(s)	49, 247, 330, 419, 722, 742
HspAI	GCGC	1 cut(s)	930
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	250, 529, 570, 951
LguI	GCTCTTC	1 cut(s)	790
LmnI	GCTCC	2 cut(s)	412, 1034
Lsp1109I	GCAGC	4 cut(s)	53, 330, 613, 616
LweI	GCATC	2 cut(s)	736, 1002
MaeI	CTAG	1 cut(s)	1080
MaeIII	GTNAC	3 cut(s)	463, 977, 1159
MalI	GATC	4 cut(s)	252, 531, 572, 953
MboI	GATC	4 cut(s)	250, 529, 570, 951
MboII	GAAGA	6 cut(s)	104, 107, 110, 631, 807, 1124
MhlI	GDGCHC	2 cut(s)	243, 694
MlsI	TGGCCA	2 cut(s)	5, 266
MluCI	AATT	4 cut(s)	606, 885, 1034, 1128
MluNI	TGGCCA	2 cut(s)	5, 266
MlyI	GAGTC	1 cut(s)	434
Mox20I	TGGCCA	2 cut(s)	5, 266
MscI	TGGCCA	2 cut(s)	5, 266
MseI	TTAA	4 cut(s)	149, 186, 593, 1047
MslI	CAYNNNNRTG	1 cut(s)	403
Msp20I	TGGCCA	2 cut(s)	5, 266
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	7, 524
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	2 cut(s)	7, 524
MwoI	GCNNNNNNNGC	7 cut(s)	125, 134, 327, 724, 765, 806, 878
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	250, 529, 570, 951
NlaIII	CATG	6 cut(s)	49, 247, 330, 419, 722, 742
NmuCI	GTSAC	2 cut(s)	463, 977
NspI	RCATGY	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	403
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	790
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	587, 659, 826
PkrI	GCNGC	4 cut(s)	43, 320, 628, 631
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PshAI	GACNNNNGTC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	5, 522
PspGI	CCWGG	2 cut(s)	5, 522
PspPI	GGNCC	3 cut(s)	135, 382, 757
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	775, 1072
RsaNI	GTAC	2 cut(s)	774, 1071
RseI	CAYNNNNRTG	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	790
SaqAI	TTAA	4 cut(s)	149, 186, 593, 1047
SatI	GCNGC	4 cut(s)	42, 319, 627, 630
Sau3AI	GATC	4 cut(s)	250, 529, 570, 951
Sau96I	GGNCC	3 cut(s)	135, 382, 757
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	7, 524
SduI	GDGCHC	2 cut(s)	243, 694
SfaNI	GCATC	2 cut(s)	736, 1002
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	606, 885, 1034, 1128
SsiI	CCGC	1 cut(s)	766
SspMI	CTAG	1 cut(s)	1080
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	5, 522
StyI	CCWWGG	3 cut(s)	45, 468, 564
TaqI	TCGA	1 cut(s)	657
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	4 cut(s)	606, 885, 1034, 1128
TatI	WGTACW	1 cut(s)	773
TfiI	GAWTC	3 cut(s)	587, 659, 826
Tru1I	TTAA	4 cut(s)	149, 186, 593, 1047
Tru9I	TTAA	4 cut(s)	149, 186, 593, 1047
TscAI	CASTG	3 cut(s)	274, 501, 1174
TseFI	GTSAC	2 cut(s)	463, 977
TseI	GCWGC	4 cut(s)	41, 318, 626, 629
Tsp45I	GTSAC	2 cut(s)	463, 977
TspDTI	ATGAA	4 cut(s)	283, 327, 501, 755
TspRI	CASTG	3 cut(s)	274, 501, 1174
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	1128
XbaI	TCTAGA	1 cut(s)	1079
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.