Prupe.6G355500_v2.0.a1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
30188611 .. 30191795
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G355500.5

Sequence Viewer

Length: 1395 bp
ATGGCCAGGACAGGTGTCTTGGAGGAGACTGAGACTGAGACTGAGAGTGACTCGTCTATGGTGGTAGCAAAGGCCGTGGAGATAAAGAAGCAGTTGGAGAGACTGGTCAAGGCCATTGTTGATGAAGATGACTATAGGGTTGAGACTGCTGATGAGGCTATCAGAGCCTTGTCTTCTTTGAAGGGCTTGAAGCTAAAAAAGTCTCTGTCGTTCAAACCTGATGGCCATGGCAATCTTCTTGATGTTCCTGAAGACTTCAGATGTCCCATCTCTGGAGAACTCATGAAGGACCCTGTTGTCTTGGCCACTGGACAGACTTATGACCGACCATTCATCCAGAGGTGGTTGAATGAAGGCAACCGAACATGCCCTCAAACAAAGCAAGTCCTCTCTCATACTGTCCTTACCCCTAATCATCTGGTTCAAGAAATGATTTCACAATGGTGCAGGGAGCATGGAATGGAGCTTCCAAAACCTGTTCAGGATATTGATGAGGAAGTTGTCAGCAATGCTGACCGGGGATATCTAAATTCATTGCTTCAGAAGATGTCATCATCCCTATCTGATCAGAAAGAAGCAGCAAAAGAGCTTCGACTGCTAACAAAGCGAAGTTCACCATTTCGGGCACTTTTTGGTGAGTCTATTGAGACCATTCCACAATTGCTCAGTCCACTTTCACCGGGCCAGGCTGATACTGATCCTGATCTTCAAGAAGATTTGATCACTACACTACTAAACCTTTCAATTCATGATAATAACAAAAGATTGGTTGCAGAGCATCCCTTGGTCATCCCTCTGCTTATTGAATCCTTAATATCTGGAACCATTCAAACAAAAAGCAATGCTGCTGCAACTTTCTTCACATTAGCAGCTATTGATTCCAACAAGATTATTATAGGAACGTCTGGTGCTCTCAATCCTTTGATTGACCTTTTAGATGAGGGGCATCCACTGGCCATGAAAGATGTTGCTTCAGCCATATTCAGCTTGTGTAGTGTTCTTGAAAATAAAGGAAGGGCCATCAATGCTGGAGCAGTCAAGGTAATTCTGCAGAAGATAATGGATCGCGTGTTAGTTGCGGAGTTGTTGGCTATACTTGCTATGCTTTCTAGCCATCAGAAGGCTGTTCAGGAAATGTGCGAGCTTGGCACTGTATCTTGCTTGTTTGGCATCATAAGGGAGAGCGATTGTGAGCACAACAAGGAGAATTGTATTGCAATCCTTTACACCATCTGCTTTGCTGATCGGACCAAATTGAAAGAAATTAAGGAAGAGGAAATGGCCAATGGTACAGTTTCCAGACTTGCACGGACCGGGACTTCGAGGGCCAAGAGAAAGGCCAGTGGAATTCTTGAGAGGCTGAATAAGACTGGCTCAATAACGCACACTGCTTGA

Protein Analysis

465

Amino Acids

51.07

Weight (kDa)

5.62

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccII CGCG 1 cut(s) 1068
AciI CCGC 1 cut(s) 1079
AclWI GGATC 2 cut(s) 692, 1071
AcoI YGGCCR 5 cut(s) 3, 223, 303, 954, 1281
AcsI RAATTY 2 cut(s) 529, 1347
AcuI CTGAAG 4 cut(s) 241, 270, 524, 957
AfaI GTAC 1 cut(s) 1291
AfiI CCNNNNNNNGG 2 cut(s) 272, 1120
AjnI CCWGG 2 cut(s) 5, 684
AleI CACNNNNGTG 1 cut(s) 442
AluBI AGCT 6 cut(s) 193, 466, 589, 872, 987, 1144
AluI AGCT 6 cut(s) 193, 466, 589, 872, 987, 1144
Alw21I GWGCWC 2 cut(s) 913, 1197
Alw26I GTCTC 7 cut(s) 20, 26, 32, 94, 137, 207, 641
AlwI GGATC 2 cut(s) 692, 1071
ApeKI GCWGC 4 cut(s) 578, 845, 848, 869
ApoI RAATTY 2 cut(s) 529, 1347
ArsI GACNNNNNNTTYG 2 cut(s) 1303, 1335
AspS9I GGNCC 6 cut(s) 289, 682, 1017, 1248, 1311, 1326
AsuC2I CCSGG 3 cut(s) 518, 681, 1315
AsuHPI GGTGA 3 cut(s) 606, 647, 669
AvaII GGWCC 3 cut(s) 289, 1248, 1311
BaeGI GKGCMC 1 cut(s) 628
BalI TGGCCA 5 cut(s) 5, 225, 305, 956, 1283
BbsI GAAGAC 2 cut(s) 165, 258
Bbv12I GWGCWC 2 cut(s) 913, 1197
BbvI GCAGC 4 cut(s) 590, 832, 835, 881
BccI CCATC 5 cut(s) 215, 275, 1028, 1122, 1238
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 7, 686
BclI TGATCA 2 cut(s) 565, 720
BcnI CCSGG 3 cut(s) 518, 681, 1315
BcoDI GTCTC 7 cut(s) 20, 26, 32, 94, 137, 207, 641
BfaI CTAG 1 cut(s) 1110
BfmI CTRYAG 2 cut(s) 133, 1049
BisI GCNGC 4 cut(s) 579, 846, 849, 870
BlsI GCNGC 4 cut(s) 580, 847, 850, 871
Bme1390I CCNGG 5 cut(s) 7, 518, 681, 686, 1315
Bme18I GGWCC 3 cut(s) 289, 1248, 1311
BmgT120I GGNCC 6 cut(s) 289, 682, 1017, 1248, 1311, 1326
BmiI GGNNCC 2 cut(s) 291, 823
BmrFI CCNGG 5 cut(s) 7, 518, 681, 686, 1315
BmsI GCATC 3 cut(s) 787, 955, 1179
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 165, 258
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 2 cut(s) 294, 1050
BpuEI CTTGAG 1 cut(s) 1373
BpuMI CCSGG 3 cut(s) 518, 681, 1315
BsaBI GATNNNNATC 2 cut(s) 696, 702
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 4 cut(s) 75, 226, 517, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 1120
Bse1I ACTGG 5 cut(s) 108, 313, 957, 1341, 1375
Bse3DI GCAATG 3 cut(s) 514, 533, 847
Bse8I GATNNNNATC 2 cut(s) 696, 702
BseBI CCWGG 2 cut(s) 7, 686
BseDI CCNNGG 4 cut(s) 75, 226, 517, 783
BseGI GGATG 5 cut(s) 333, 554, 778, 789, 946
BseJI GATNNNNATC 2 cut(s) 696, 702
BseLI CCNNNNNNNGG 2 cut(s) 272, 1120
BseMI GCAATG 3 cut(s) 514, 533, 847
BseMII CTCAG 4 cut(s) 21, 27, 33, 679
BseNI ACTGG 5 cut(s) 108, 313, 957, 1341, 1375
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 4 cut(s) 590, 832, 835, 881
BsgI GTGCAG 1 cut(s) 466
Bsh1236I CGCG 1 cut(s) 1068
BsiHKAI GWGCWC 2 cut(s) 913, 1197
BsiSI CCGG 3 cut(s) 517, 680, 1314
BslFI GGGAC 2 cut(s) 249, 1330
BslI CCNNNNNNNGG 2 cut(s) 272, 1120
BsmAI GTCTC 7 cut(s) 20, 26, 32, 94, 137, 207, 641
BsmFI GGGAC 2 cut(s) 249, 1330
Bso31I GGTCTC 1 cut(s) 641
Bsp1286I GDGCHC 3 cut(s) 628, 913, 1197
Bsp143I GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 1079
BspCNI CTCAG 4 cut(s) 22, 28, 34, 678
BspFNI CGCG 1 cut(s) 1068
BspHI TCATGA 2 cut(s) 282, 748
BspLI GGNNCC 2 cut(s) 291, 823
BspMAI CTGCAG 1 cut(s) 1053
BspPI GGATC 2 cut(s) 692, 1071
BspTNI GGTCTC 1 cut(s) 641
BsrDI GCAATG 3 cut(s) 514, 533, 847
BsrI ACTGG 5 cut(s) 108, 313, 957, 1341, 1375
BssECI CCNNGG 4 cut(s) 75, 226, 517, 783
BssMI GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
BssT1I CCWWGG 2 cut(s) 226, 783
Bst2UI CCWGG 2 cut(s) 7, 686
Bst4CI ACNGT 3 cut(s) 400, 1153, 1294
Bst6I CTCTTC 1 cut(s) 1266
BstC8I GCNNGC 1 cut(s) 1142
BstDEI CTNAG 4 cut(s) 30, 36, 42, 665
BstDSI CCRYGG 2 cut(s) 75, 226
BstF5I GGATG 5 cut(s) 333, 554, 778, 789, 946
BstFNI CGCG 1 cut(s) 1068
BstKTI GATC 6 cut(s) 568, 700, 706, 723, 1066, 1246
BstMAI GTCTC 7 cut(s) 20, 26, 32, 94, 137, 207, 641
BstMBI GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
BstMWI GCNNNNNNNGC 8 cut(s) 155, 164, 595, 604, 1025, 1097, 1146, 1167
BstNI CCWGG 2 cut(s) 7, 686
BstNSI RCATGY 1 cut(s) 369
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 5 cut(s) 5, 516, 679, 684, 1313
BstSFI CTRYAG 2 cut(s) 133, 1049
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 1 cut(s) 1068
BstV1I GCAGC 4 cut(s) 590, 832, 835, 881
BstV2I GAAGAC 2 cut(s) 165, 258
BtgI CCRYGG 2 cut(s) 75, 226
BtsCI GGATG 5 cut(s) 333, 554, 778, 789, 946
BtsI GCAGTG 1 cut(s) 1386
BtsIMutI CAGTG 5 cut(s) 306, 950, 1149, 1348, 1386
Cac8I GCNNGC 1 cut(s) 1142
CciI TCATGA 2 cut(s) 282, 748
Cfr13I GGNCC 6 cut(s) 289, 682, 1017, 1248, 1311, 1326
CpoI CGGWCCG 1 cut(s) 1311
Csp6I GTAC 1 cut(s) 1290
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CspI CGGWCCG 1 cut(s) 1311
CviAII CATG 6 cut(s) 227, 283, 366, 455, 749, 958
CviQI GTAC 1 cut(s) 1290
DdeI CTNAG 4 cut(s) 30, 36, 42, 665
DpnI GATC 6 cut(s) 567, 699, 705, 722, 1065, 1245
DpnII GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 5 cut(s) 3, 223, 303, 954, 1281
Eam1104I CTCTTC 1 cut(s) 1266
EarI CTCTTC 1 cut(s) 1266
Eco130I CCWWGG 2 cut(s) 226, 783
Eco31I GGTCTC 1 cut(s) 641
Eco32I GATATC 1 cut(s) 524
Eco47I GGWCC 3 cut(s) 289, 1248, 1311
Eco57I CTGAAG 4 cut(s) 241, 270, 524, 957
EcoO109I RGGNCCY 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 1347
EcoRII CCWGG 2 cut(s) 5, 684
EcoRV GATATC 1 cut(s) 524
EcoT14I CCWWGG 2 cut(s) 226, 783
ErhI CCWWGG 2 cut(s) 226, 783
FaeI CATG 6 cut(s) 230, 286, 369, 458, 752, 961
FaqI GGGAC 2 cut(s) 249, 1330
FatI CATG 6 cut(s) 226, 282, 365, 454, 748, 957
FbaI TGATCA 2 cut(s) 565, 720
Fnu4HI GCNGC 4 cut(s) 579, 846, 849, 870
FokI GGATG 5 cut(s) 320, 541, 765, 776, 933
Fsp4HI GCNGC 4 cut(s) 579, 846, 849, 870
FspBI CTAG 1 cut(s) 1110
GluI GCNGC 4 cut(s) 579, 846, 849, 870
GsuI CTGGAG 2 cut(s) 294, 1050
HapII CCGG 3 cut(s) 517, 680, 1314
Hin1II CATG 6 cut(s) 230, 286, 369, 458, 752, 961
HinfI GANTC 4 cut(s) 50, 638, 806, 878
HpaII CCGG 3 cut(s) 517, 680, 1314
HphI GGTGA 3 cut(s) 606, 647, 669
Hpy166II GTNNAC 2 cut(s) 614, 671
Hpy188I TCNGA 7 cut(s) 164, 260, 543, 565, 570, 1119, 1248
Hpy8I GTNNAC 2 cut(s) 614, 671
HpyAV CCTTC 5 cut(s) 175, 280, 347, 1008, 1114
HpyCH4III ACNGT 3 cut(s) 400, 1153, 1294
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 6 cut(s) 447, 773, 851, 1051, 1217, 1307
HpyF10VI GCNNNNNNNGC 8 cut(s) 155, 164, 595, 604, 1025, 1097, 1146, 1167
HpyF3I CTNAG 4 cut(s) 30, 36, 42, 665
HpySE526I ACGT 1 cut(s) 902
Hsp92II CATG 6 cut(s) 230, 286, 369, 458, 752, 961
Ksp22I TGATCA 2 cut(s) 565, 720
Kzo9I GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
LmnI GCTCC 3 cut(s) 451, 463, 1031
Lsp1109I GCAGC 4 cut(s) 590, 832, 835, 881
LweI GCATC 3 cut(s) 787, 955, 1179
MaeI CTAG 1 cut(s) 1110
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 1 cut(s) 47
MalI GATC 6 cut(s) 567, 699, 705, 722, 1065, 1245
MboI GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
MfeI CAATTG 1 cut(s) 659
MhlI GDGCHC 3 cut(s) 628, 913, 1197
MlsI TGGCCA 5 cut(s) 5, 225, 305, 956, 1283
MluCI AATT 8 cut(s) 529, 659, 744, 1044, 1207, 1253, 1263, 1347
MluNI TGGCCA 5 cut(s) 5, 225, 305, 956, 1283
MlyI GAGTC 2 cut(s) 44, 647
MmeI TCCRAC 2 cut(s) 75, 906
Mox20I TGGCCA 5 cut(s) 5, 225, 305, 956, 1283
MscI TGGCCA 5 cut(s) 5, 225, 305, 956, 1283
MseI TTAA 2 cut(s) 812, 1266
MslI CAYNNNNRTG 1 cut(s) 442
Msp20I TGGCCA 5 cut(s) 5, 225, 305, 956, 1283
MspI CCGG 3 cut(s) 517, 680, 1314
MspR9I CCNGG 5 cut(s) 7, 518, 681, 686, 1315
MunI CAATTG 1 cut(s) 659
MvaI CCWGG 2 cut(s) 7, 686
MvnI CGCG 1 cut(s) 1068
MwoI GCNNNNNNNGC 8 cut(s) 155, 164, 595, 604, 1025, 1097, 1146, 1167
NciI CCSGG 3 cut(s) 518, 681, 1315
NcoI CCATGG 1 cut(s) 226
NdeII GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
NlaIII CATG 6 cut(s) 230, 286, 369, 458, 752, 961
NlaIV GGNNCC 2 cut(s) 291, 823
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 369
OliI CACNNNNGTG 1 cut(s) 442
PagI TCATGA 2 cut(s) 282, 748
PfeI GAWTC 2 cut(s) 806, 878
PkrI GCNGC 4 cut(s) 580, 847, 850, 871
PleI GAGTC 2 cut(s) 44, 646
PpsI GAGTC 2 cut(s) 44, 646
PpuMI RGGWCCY 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 5, 684
PspGI CCWGG 2 cut(s) 5, 684
PspN4I GGNNCC 2 cut(s) 291, 823
PspPI GGNCC 6 cut(s) 289, 682, 1017, 1248, 1311, 1326
PspPPI RGGWCCY 1 cut(s) 289
PstI CTGCAG 1 cut(s) 1053
RsaI GTAC 1 cut(s) 1291
RsaNI GTAC 1 cut(s) 1290
RseI CAYNNNNRTG 1 cut(s) 442
Rsr2I CGGWCCG 1 cut(s) 1311
RsrII CGGWCCG 1 cut(s) 1311
SaqAI TTAA 2 cut(s) 812, 1266
SatI GCNGC 4 cut(s) 579, 846, 849, 870
Sau3AI GATC 6 cut(s) 565, 697, 703, 720, 1063, 1243
Sau96I GGNCC 6 cut(s) 289, 682, 1017, 1248, 1311, 1326
SchI GAGTC 2 cut(s) 44, 647
ScrFI CCNGG 5 cut(s) 7, 518, 681, 686, 1315
SduI GDGCHC 3 cut(s) 628, 913, 1197
SfaNI GCATC 3 cut(s) 787, 955, 1179
SfcI CTRYAG 2 cut(s) 133, 1049
SinI GGWCC 3 cut(s) 289, 1248, 1311
SmiMI CAYNNNNRTG 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 1352
SmoI CTYRAG 1 cut(s) 1352
Sse9I AATT 8 cut(s) 529, 659, 744, 1044, 1207, 1253, 1263, 1347
SsiI CCGC 1 cut(s) 1079
SspMI CTAG 1 cut(s) 1110
StyD4I CCNGG 5 cut(s) 5, 516, 679, 684, 1313
StyI CCWWGG 2 cut(s) 226, 783
TaaI ACNGT 3 cut(s) 400, 1153, 1294
TaiI ACGT 1 cut(s) 905
TaqI TCGA 2 cut(s) 592, 1322
TaqII GACCGA 1 cut(s) 339
TasI AATT 8 cut(s) 529, 659, 744, 1044, 1207, 1253, 1263, 1347
TfiI GAWTC 2 cut(s) 806, 878
Tru1I TTAA 2 cut(s) 812, 1266
Tru9I TTAA 2 cut(s) 812, 1266
TscAI CASTG 5 cut(s) 313, 957, 1156, 1348, 1393
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 578, 845, 848, 869
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 7 cut(s) 138, 299, 322, 366, 522, 737, 974
TspGWI ACGGA 1 cut(s) 1324
TspRI CASTG 5 cut(s) 313, 957, 1156, 1348, 1393
VpaK11BI GGWCC 3 cut(s) 289, 1248, 1311
XapI RAATTY 2 cut(s) 529, 1347
XceI RCATGY 1 cut(s) 369
XspI CTAG 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.