Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001451

Physical Location & Seq

Genomic Coordinates Forward (+)

12874301 .. 12875272

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATATCGCAATGGTGTAGGAATCGAGGGATTGAATTGTCAGATCCCGTTCTCCATGTCAATGAGGATGGTATAACAGAATCTGATCGAGACCATTTTCTCTCTTTGCTCCGGAAGATGTCTTCGACGTTCCCTGAGCAGAAAGAAGCTGCGAAGGAGCTTCGGATGCTGACAAAGAGGATGCCTTCTTTCCGGGCGCTTTTCAACGAGTCTATACATGCCATTCCTCAATTGCTCAGTCATCCATCTGAAGGGAAGTTTGAAGATGGTATTGACCCGGAACTCCAAGAAGATATTATCACAACGCTATTGAATTTGTCAATCCACGACAACAACAAGAAGCTTGTGGCTGAAACTTTAATGGTAATTCCTTTACTTATGGAAGCATTGCAATCGGGGACTATTCAAACAAGGAGCAATGCAGCTGCAGCTCTTTTCACTTTGTCAGCTCTTGAGTCCAACAAGGCACTTATTGGAAAATCAGGTGCCCTAAAGCCACTCATTGCCCTCCTAGACGAGGGACATCCATTAGCTATGAAAGATGTCGCCTCTGCAATTTTCAATCTATGCATTACTCATGAGAACAAGGCAAGAATTGTGAGAGACGGGGCAGTGAGGACGATTCTGAAAAAGATAGCGAACAGTGTGCATGTTGATGAGTTGTTGGCCATCCTCGCAATGATCTCAAGCCATCCTAAGGCTGTGGAGGAAATGGGAGAGCTTGGAGGTGTTTCTTGCTTGCTCCGTGTTATCAGGGAGACCAATTGCTCACGCAACAAGGAGAATTGCATTGCAGTCCTTCACACAATCTGTTTGAATGACCGAACCAAGTGGAAGGAAATTAGGGAAGAAGAGAACACTTATGGAACGATATCTGAGCTTGCAAATAATGGAACTTCAAGGGCTAAGAGGAAAGCTAGTGGCATTCTTGATAGACTGAACAGATCTGTAAATCTCACACATACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

324

Amino Acids

35.81

Weight (kDa)

6.84

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	46 - 210	4.7e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360 AT3G07360
fragaria_vesca	FvH4_2g18070 FvH4_6g01250
malus_domestica	MD04G1235600.v1.1 MD05G1165400.v1.1 MD10G1154600.v1.1 MD12G1253300.v1.1
prunus_persica	Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.6G355500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1 Prupe.8G193500_v2.0.a1
pyrus_communis	pycom04g20910 pycom05g15400 pycom10g09710 pycom10g13370 pycom12g23240
rosa_chinensis	RchiOBHm_Chr3g0448811 RchiOBHm_Chr6g0283461
rosa_laevigata	RLG00000012824 RLG00000025873
rosa_multiflora	Rmu_sc0003116.1_g000024 Rmu_sc0004959.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427030 Rroxscaffold_7G00185520
rosa_rugosa	Rorug02G0616500.1 Rorug02G0616600 Rorug06G0154400
rosa_samantha	Rh3AG014900 Rh3BG014700 Rh3CG013600 Rh3DG015200 Rh6AG266700 Rh6BG269200 Rh6CG269100 Rh6DG262500
rosa_wichuraiana	Rw3G001100 Rw6G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccIII	TCCGGA	1 cut(s)	111
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	251, 517, 697
AgsI	TTSAA	8 cut(s)	35, 205, 263, 313, 407, 562, 817, 900
Alw26I	GTCTC	3 cut(s)	84, 597, 752
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	4 cut(s)	149, 422, 425, 428
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	199
AsuC2I	CCSGG	2 cut(s)	194, 278
AxyI	CCTNAGG	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	136, 412, 434, 440
BccI	CCATC	5 cut(s)	62, 253, 260, 677, 699
BcgI	CGANNNNNNTGC	4 cut(s)	375, 409, 628, 662
BcnI	CCSGG	2 cut(s)	194, 278
BcoDI	GTCTC	3 cut(s)	84, 597, 752
BfaI	CTAG	2 cut(s)	512, 918
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	200
BglII	AGATCT	1 cut(s)	944
BisI	GCNGC	4 cut(s)	150, 423, 426, 429
BlsI	GCNGC	4 cut(s)	151, 424, 427, 430
Bme1390I	CCNGG	2 cut(s)	194, 278
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	2 cut(s)	194, 278
BmsI	GCATC	2 cut(s)	156, 171
BpiI	GAAGAC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	473, 670
BpuMI	CCSGG	2 cut(s)	194, 278
BsaI	GGTCTC	2 cut(s)	84, 752
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 517, 697
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	6 cut(s)	17, 386, 424, 501, 684, 789
BseAI	TCCGGA	1 cut(s)	111
BseGI	GGATG	7 cut(s)	73, 171, 186, 241, 523, 669, 691
BseLI	CCNNNNNNNGG	3 cut(s)	251, 517, 697
BseMI	GCAATG	6 cut(s)	17, 386, 424, 501, 684, 789
BseMII	CTCAG	3 cut(s)	126, 250, 867
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	4 cut(s)	136, 412, 434, 440
BshFI	GGCC	1 cut(s)	668
BshNI	GGYRCC	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	112, 193, 278
BslFI	GGGAC	2 cut(s)	412, 534
BslI	CCNNNNNNNGG	3 cut(s)	251, 517, 697
BsmAI	GTCTC	3 cut(s)	84, 597, 752
BsmBI	CGTCTC	1 cut(s)	597
BsmFI	GGGAC	2 cut(s)	412, 534
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	668
Bso31I	GGTCTC	2 cut(s)	84, 752
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	43, 85, 681, 944
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	127, 249, 868
BspEI	TCCGGA	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	2 cut(s)	84, 752
BsrDI	GCAATG	6 cut(s)	17, 386, 424, 501, 684, 789
BssMI	GATC	4 cut(s)	43, 85, 681, 944
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	846
BstC8I	GCNNGC	2 cut(s)	740, 882
BstDEI	CTNAG	5 cut(s)	135, 236, 696, 876, 906
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	7 cut(s)	73, 171, 186, 241, 523, 669, 691
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	46, 88, 684, 947
BstMAI	GTCTC	3 cut(s)	84, 597, 752
BstMBI	GATC	4 cut(s)	43, 85, 681, 944
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 428, 674
BstNSI	RCATGY	2 cut(s)	221, 653
BstSCI	CCNGG	2 cut(s)	192, 276
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	4 cut(s)	136, 412, 434, 440
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	43, 944
BstYI	RGATCY	2 cut(s)	43, 944
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	668
BtsCI	GGATG	7 cut(s)	73, 171, 186, 241, 523, 669, 691
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	2 cut(s)	618, 649
Cac8I	GCNNGC	2 cut(s)	740, 882
CaiI	CAGNNNCTG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	199
CviAII	CATG	5 cut(s)	56, 218, 578, 650, 969
DdeI	CTNAG	5 cut(s)	135, 236, 696, 876, 906
DpnI	GATC	4 cut(s)	45, 87, 683, 946
DpnII	GATC	4 cut(s)	43, 85, 681, 944
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Eco31I	GGTCTC	2 cut(s)	84, 752
Eco32I	GATATC	2 cut(s)	6, 873
Eco57I	CTGAAG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRV	GATATC	2 cut(s)	6, 873
EcoT22I	ATGCAT	1 cut(s)	572
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	5 cut(s)	59, 221, 581, 653, 972
FaqI	GGGAC	2 cut(s)	412, 534
FatI	CATG	5 cut(s)	55, 217, 577, 649, 968
Fnu4HI	GCNGC	4 cut(s)	150, 423, 426, 429
FokI	GGATG	7 cut(s)	80, 178, 193, 228, 510, 656, 678
Fsp4HI	GCNGC	4 cut(s)	150, 423, 426, 429
FspBI	CTAG	2 cut(s)	512, 918
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	150, 423, 426, 429
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	3 cut(s)	112, 193, 278
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	59, 221, 581, 653, 972
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	5 cut(s)	22, 80, 209, 455, 622
HpaII	CCGG	3 cut(s)	112, 193, 278
Hpy188I	TCNGA	6 cut(s)	43, 85, 165, 250, 627, 877
Hpy188III	TCNNGA	5 cut(s)	89, 112, 452, 578, 929
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	5 cut(s)	148, 195, 245, 809, 829
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 428, 674
HpyF3I	CTNAG	5 cut(s)	135, 236, 696, 876, 906
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	59, 221, 581, 653, 972
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	43, 85, 681, 944
LmnI	GCTCC	4 cut(s)	114, 157, 414, 747
LpnPI	CCDG	6 cut(s)	125, 147, 206, 291, 468, 739
Lsp1109I	GCAGC	4 cut(s)	136, 412, 434, 440
LweI	GCATC	2 cut(s)	156, 171
MaeI	CTAG	2 cut(s)	512, 918
MaeII	ACGT	1 cut(s)	128
MalI	GATC	4 cut(s)	45, 87, 683, 946
MboI	GATC	4 cut(s)	43, 85, 681, 944
MboII	GAAGA	6 cut(s)	114, 127, 275, 302, 860, 863
MfeI	CAATTG	2 cut(s)	230, 763
MflI	RGATCY	2 cut(s)	43, 944
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	9 cut(s)	35, 230, 313, 366, 555, 594, 763, 784, 840
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	2 cut(s)	218, 464
MmeI	TCCRAC	1 cut(s)	483
Mox20I	TGGCCA	1 cut(s)	668
Mph1103I	ATGCAT	1 cut(s)	572
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	2 cut(s)	60, 654
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	112, 193, 278
MspR9I	CCNGG	2 cut(s)	194, 278
MunI	CAATTG	2 cut(s)	230, 763
Mva1269I	GAATGC	1 cut(s)	924
MwoI	GCNNNNNNNGC	3 cut(s)	166, 428, 674
NciI	CCSGG	2 cut(s)	194, 278
NdeII	GATC	4 cut(s)	43, 85, 681, 944
NlaIII	CATG	5 cut(s)	59, 221, 581, 653, 972
NlaIV	GGNNCC	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	572
NspI	RCATGY	2 cut(s)	221, 653
PagI	TCATGA	1 cut(s)	577
PctI	GAATGC	1 cut(s)	924
PfeI	GAWTC	3 cut(s)	22, 80, 622
PkrI	GCNGC	4 cut(s)	151, 424, 427, 430
PleI	GAGTC	2 cut(s)	217, 463
PpsI	GAGTC	2 cut(s)	217, 463
PspN4I	GGNNCC	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	43, 944
PvuII	CAGCTG	1 cut(s)	425
RseI	CAYNNNNRTG	2 cut(s)	60, 654
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	4 cut(s)	150, 423, 426, 429
Sau3AI	GATC	4 cut(s)	43, 85, 681, 944
SchI	GAGTC	2 cut(s)	218, 464
ScrFI	CCNGG	2 cut(s)	194, 278
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	156, 171
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	60, 654
SmlI	CTYRAG	2 cut(s)	452, 685
SmoI	CTYRAG	2 cut(s)	452, 685
Sse9I	AATT	9 cut(s)	35, 230, 313, 366, 555, 594, 763, 784, 840
SspMI	CTAG	2 cut(s)	512, 918
StyD4I	CCNGG	2 cut(s)	192, 276
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	3 cut(s)	25, 88, 125
TaqII	GACCGA	1 cut(s)	837
TasI	AATT	9 cut(s)	35, 230, 313, 366, 555, 594, 763, 784, 840
TfiI	GAWTC	3 cut(s)	22, 80, 622
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	2 cut(s)	618, 649
TseI	GCWGC	4 cut(s)	149, 422, 425, 428
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	2 cut(s)	618, 649
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	2 cut(s)	221, 653
XspI	CTAG	2 cut(s)	512, 918
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.