Rorug02G0616600

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
73493157 .. 73496151
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0616600.1

Sequence Viewer

Length: 1158 bp
ATGGCCACCCTACCATTTCCCAAGTTGTACCTTGAAGATGTGAAGCTAGAGGCAGAACTGGACATTAAGAAGGCTTGGGTCAGAGAAGTACTTCGAGGGATTATGTGGAGAATGTCCAAGGGCATCAACAGTGGATCCCTGGACCCTAAGCTAATTGAAATCATTGACAACAGAGCTATGTTGCCGGAGGAAGCAGTCATAGAGGGCATACATCCACCATACCTTCTCGCCATCAAGTCCTTCGTCACTGATTTCCATGCCAGTGACTATCCAAAGATGAGCCCAAGGGACCGGCTGCAGTACGATGACTTTGTGTCTTTTTTAGACACACTCACCACTCTGTATGTGCTACCTTCCCTCTTTTTCTTTCCATTTGCAAGTTATGGATCTGCAACATGTGCATTTGTTGCTTTTATGAGGCAGCTGATATTACTGAGCAACCATCCACATCTGCAAAATGAAGTTGAGTCATGTGCATTCTTACCCGGAGCACGAAGCGTGCTTTATGACACTCTACAAAATCCCAACCATGCTTTCCCCAGTCGCCGCCACTTCCCAAAACTCAGCGGCAGTCATCACCAAGTTGGACAAGCTGTGGCAACAGATCCTACGTTGATGAGGTGGGAAAATGCATATAGTAGACTGGTCAAACAGACGAGGACCAAAAGAGTTAATATCAGAAAATCAGTCTCAGAACTTGATCCAGAATTTCTCCAGTTATTTGAGGATGGGTATGGCTATACTGAACCAAAACGTTACCTTGATCATGACCCTGTGCACGAGCTCTTTTATTTCTGCAATGCAATTAAGCATTTGGGCAAATATTATCCAAAGGAAAAGATAACTACTGAGATAACTACGGCTAACTTGTTGCTCACGGTGTCTCCAACCATGCTGATTGAAATGTTCCGGTTTTTCTGGTGTTATGATGGCATCGCAGGAATTGATCTCTGCAATGTCATAGGAAGAAGAATTGAGGAGGGAGGCCCTGGACGAATTTTCCCAGGAGACTATCAATCAGTACCTGCAACAGTATTTCAGGTTGGAGGCATATACTGTTGGTATCCTCGGGAAGAATTGTCTGATGAAGAAGATGTGCAAAGGGGACTGAGGGATTTAAATGTTTACTTCCCCAGCCAGATGTTTGGATACACATAG

Protein Analysis

385

Amino Acids

44.36

Weight (kDa)

5.91

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1033
AccI GTMKAC 1 cut(s) 640
AciI CCGC 2 cut(s) 547, 567
AclI AACGTT 1 cut(s) 754
AclWI GGATC 5 cut(s) 129, 142, 394, 599, 695
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 707, 996
AfaI GTAC 4 cut(s) 29, 90, 302, 1023
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 3 cut(s) 35, 158, 902
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 3 cut(s) 138, 988, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 6 cut(s) 46, 151, 176, 424, 593, 784
AluI AGCT 6 cut(s) 46, 151, 176, 424, 593, 784
Alw21I GWGCWC 3 cut(s) 493, 780, 786
Alw26I GTCTC 3 cut(s) 694, 888, 1002
Alw44I GTGCAC 1 cut(s) 776
AlwI GGATC 5 cut(s) 129, 142, 394, 599, 695
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 1 cut(s) 1068
AoxI GGCC 2 cut(s) 3, 985
ApaLI GTGCAC 1 cut(s) 776
ApeKI GCWGC 2 cut(s) 295, 421
ApoI RAATTY 2 cut(s) 707, 996
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 142, 289, 660, 986
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 325, 569
AvaI CYCGRG 1 cut(s) 1068
AvaII GGWCC 3 cut(s) 142, 289, 660
BaeGI GKGCMC 1 cut(s) 780
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 134
BanII GRGCYC 2 cut(s) 284, 786
BauI CACGAG 1 cut(s) 779
Bbv12I GWGCWC 3 cut(s) 493, 780, 786
BbvI GCAGC 2 cut(s) 282, 433
BccI CCATC 4 cut(s) 239, 450, 722, 923
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 3 cut(s) 140, 990, 1005
BciVI GTATCC 2 cut(s) 1074, 1142
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 3 cut(s) 694, 888, 1002
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 1033
BfuI GTATCC 2 cut(s) 1074, 1142
BisI GCNGC 4 cut(s) 296, 422, 547, 568
BlsI GCNGC 4 cut(s) 297, 423, 548, 569
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 4 cut(s) 140, 486, 990, 1005
Bme18I GGWCC 3 cut(s) 142, 289, 660
BmeRI GACNNNNNGTC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 1068
BmgT120I GGNCC 4 cut(s) 142, 289, 660, 986
BmiI GGNNCC 3 cut(s) 136, 144, 290
BmrFI CCNGG 4 cut(s) 140, 486, 990, 1005
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 2 cut(s) 132, 942
BmuI ACTGGG 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 698
Bpu10I CCTNAGC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 486
BsaJI CCNNGG 6 cut(s) 117, 138, 284, 988, 1003, 1067
BsaWI WCCGGW 1 cut(s) 909
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 5 cut(s) 63, 261, 540, 648, 715
Bse3DI GCAATG 2 cut(s) 805, 961
BseBI CCWGG 3 cut(s) 140, 990, 1005
BseDI CCNNGG 6 cut(s) 117, 138, 284, 988, 1003, 1067
BseGI GGATG 3 cut(s) 211, 442, 733
BseMI GCAATG 2 cut(s) 805, 961
BseMII CTCAG 5 cut(s) 425, 577, 705, 840, 1100
BseNI ACTGG 5 cut(s) 63, 261, 540, 648, 715
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 780
BseXI GCAGC 2 cut(s) 282, 433
BseYI CCCAGC 1 cut(s) 1133
BshFI GGCC 2 cut(s) 5, 987
BsiHKAI GWGCWC 3 cut(s) 493, 780, 786
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 4 cut(s) 185, 292, 486, 910
BslFI GGGAC 2 cut(s) 302, 1119
BsmAI GTCTC 3 cut(s) 694, 888, 1002
BsmFI GGGAC 2 cut(s) 302, 1119
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 5, 987
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 4 cut(s) 284, 493, 780, 786
Bsp143I GATC 6 cut(s) 134, 386, 604, 700, 763, 946
BspACI CCGC 2 cut(s) 547, 567
BspANI GGCC 2 cut(s) 5, 987
BspCNI CTCAG 5 cut(s) 426, 576, 704, 841, 1101
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 3 cut(s) 136, 144, 290
BspMAI CTGCAG 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 5 cut(s) 129, 142, 394, 599, 695
BsrDI GCAATG 2 cut(s) 805, 961
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 5 cut(s) 63, 261, 540, 648, 715
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 6 cut(s) 117, 138, 284, 988, 1003, 1067
BssMI GATC 6 cut(s) 134, 386, 604, 700, 763, 946
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 117, 284
Bst2BI CACGAG 1 cut(s) 779
Bst2UI CCWGG 3 cut(s) 140, 990, 1005
Bst4CI ACNGT 4 cut(s) 131, 880, 1033, 1058
BstAPI GCANNNNNTGC 2 cut(s) 398, 407
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 6 cut(s) 147, 434, 563, 691, 849, 1109
BstF5I GGATG 3 cut(s) 211, 442, 733
BstKTI GATC 6 cut(s) 137, 389, 607, 703, 766, 949
BstMAI GTCTC 3 cut(s) 694, 888, 1002
BstMBI GATC 6 cut(s) 134, 386, 604, 700, 763, 946
BstMWI GCNNNNNNNGC 2 cut(s) 398, 407
BstNI CCWGG 3 cut(s) 140, 990, 1005
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 4 cut(s) 138, 484, 988, 1003
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 780
BstV1I GCAGC 2 cut(s) 282, 433
BstX2I RGATCY 3 cut(s) 134, 386, 604
BstXI CCANNNNNNTGG 1 cut(s) 1145
BstYI RGATCY 3 cut(s) 134, 386, 604
BsuI GTATCC 2 cut(s) 1074, 1142
BsuRI GGCC 2 cut(s) 5, 987
BtgZI GCGATG 1 cut(s) 919
BtsCI GGATG 3 cut(s) 211, 442, 733
BtsIMutI CAGTG 3 cut(s) 136, 246, 268
BveI ACCTGC 1 cut(s) 1033
Cac8I GCNNGC 1 cut(s) 500
CaiI CAGNNNCTG 1 cut(s) 1025
CciI TCATGA 1 cut(s) 766
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 4 cut(s) 142, 289, 660, 986
Csp6I GTAC 4 cut(s) 28, 89, 301, 1022
CviAII CATG 6 cut(s) 257, 396, 471, 530, 767, 892
CviQI GTAC 4 cut(s) 28, 89, 301, 1022
DdeI CTNAG 6 cut(s) 147, 434, 563, 691, 849, 1109
DpnI GATC 6 cut(s) 136, 388, 606, 702, 765, 948
DpnII GATC 6 cut(s) 134, 386, 604, 700, 763, 946
DraI TTTAAA 1 cut(s) 1119
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 313
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 2 cut(s) 117, 284
Eco24I GRGCYC 2 cut(s) 284, 786
Eco47I GGWCC 3 cut(s) 142, 289, 660
Eco53kI GAGCTC 1 cut(s) 784
Eco88I CYCGRG 1 cut(s) 1068
EcoICRI GAGCTC 1 cut(s) 784
EcoO109I RGGNCCY 1 cut(s) 986
EcoRII CCWGG 3 cut(s) 138, 988, 1003
EcoT14I CCWWGG 2 cut(s) 117, 284
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 2 cut(s) 284, 786
ErhI CCWWGG 2 cut(s) 117, 284
FaeI CATG 6 cut(s) 260, 399, 474, 533, 770, 895
FaqI GGGAC 2 cut(s) 302, 1119
FatI CATG 6 cut(s) 256, 395, 470, 529, 766, 891
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 4 cut(s) 296, 422, 547, 568
FokI GGATG 3 cut(s) 198, 429, 740
FriOI GRGCYC 2 cut(s) 284, 786
Fsp4HI GCNGC 4 cut(s) 296, 422, 547, 568
FspBI CTAG 1 cut(s) 47
GluI GCNGC 4 cut(s) 296, 422, 547, 568
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 2 cut(s) 5, 987
HapII CCGG 4 cut(s) 185, 292, 486, 910
Hin1II CATG 6 cut(s) 260, 399, 474, 533, 770, 895
HinfI GANTC 1 cut(s) 467
HpaII CCGG 4 cut(s) 185, 292, 486, 910
HphI GGTGA 2 cut(s) 325, 569
Hpy166II GTNNAC 3 cut(s) 641, 778, 1126
Hpy188I TCNGA 4 cut(s) 83, 680, 694, 1084
Hpy188III TCNNGA 3 cut(s) 704, 767, 1070
Hpy8I GTNNAC 3 cut(s) 641, 778, 1126
HpyAV CCTTC 4 cut(s) 64, 233, 250, 363
HpyCH4III ACNGT 4 cut(s) 131, 880, 1033, 1058
HpyCH4IV ACGT 2 cut(s) 611, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 407
HpyF3I CTNAG 6 cut(s) 147, 434, 563, 691, 849, 1109
HpySE526I ACGT 2 cut(s) 611, 754
Hsp92II CATG 6 cut(s) 260, 399, 474, 533, 770, 895
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 6 cut(s) 134, 386, 604, 700, 763, 946
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 2 cut(s) 282, 433
LweI GCATC 2 cut(s) 132, 942
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 611, 754
MaeIII GTNAC 3 cut(s) 244, 263, 755
MalI GATC 6 cut(s) 136, 388, 606, 702, 765, 948
MboI GATC 6 cut(s) 134, 386, 604, 700, 763, 946
MboII GAAGA 6 cut(s) 47, 978, 981, 1085, 1100, 1103
MflI RGATCY 3 cut(s) 134, 386, 604
MhlI GDGCHC 4 cut(s) 284, 493, 780, 786
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 153, 707, 804, 942, 972, 996, 1076
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 3 cut(s) 565, 911, 1024
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 634
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 66, 672, 807, 1118
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 424, 567
MspI CCGG 4 cut(s) 185, 292, 486, 910
MspR9I CCNGG 4 cut(s) 140, 486, 990, 1005
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 3 cut(s) 140, 990, 1005
MwoI GCNNNNNNNGC 2 cut(s) 398, 407
NciI CCSGG 1 cut(s) 486
NdeII GATC 6 cut(s) 134, 386, 604, 700, 763, 946
NlaIII CATG 6 cut(s) 260, 399, 474, 533, 770, 895
NlaIV GGNNCC 3 cut(s) 136, 144, 290
NmuCI GTSAC 2 cut(s) 244, 263
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 399
PagI TCATGA 1 cut(s) 766
PciI ACATGT 1 cut(s) 395
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 90
PkrI GCNGC 4 cut(s) 297, 423, 548, 569
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PscI ACATGT 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 754
Psp6I CCWGG 3 cut(s) 138, 988, 1003
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 3 cut(s) 138, 988, 1003
PspN4I GGNNCC 3 cut(s) 136, 144, 290
PspPI GGNCC 4 cut(s) 142, 289, 660, 986
PstI CTGCAG 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 3 cut(s) 134, 386, 604
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 4 cut(s) 29, 90, 302, 1023
RsaNI GTAC 4 cut(s) 28, 89, 301, 1022
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 786
SaqAI TTAA 4 cut(s) 66, 672, 807, 1118
SatI GCNGC 4 cut(s) 296, 422, 547, 568
Sau3AI GATC 6 cut(s) 134, 386, 604, 700, 763, 946
Sau96I GGNCC 4 cut(s) 142, 289, 660, 986
ScaI AGTACT 1 cut(s) 90
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 4 cut(s) 140, 486, 990, 1005
SduI GDGCHC 4 cut(s) 284, 493, 780, 786
SfaNI GCATC 2 cut(s) 132, 942
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 3 cut(s) 142, 289, 660
SmiI ATTTAAAT 1 cut(s) 1119
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 7 cut(s) 153, 707, 804, 942, 972, 996, 1076
SsiI CCGC 2 cut(s) 547, 567
SspI AATATT 1 cut(s) 824
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 786
StyD4I CCNGG 4 cut(s) 138, 484, 988, 1003
StyI CCWWGG 2 cut(s) 117, 284
SwaI ATTTAAAT 1 cut(s) 1119
TaaI ACNGT 4 cut(s) 131, 880, 1033, 1058
TaiI ACGT 2 cut(s) 614, 757
TaqI TCGA 1 cut(s) 94
TasI AATT 7 cut(s) 153, 707, 804, 942, 972, 996, 1076
TatI WGTACW 1 cut(s) 88
TauI GCSGC 2 cut(s) 549, 570
Tru1I TTAA 4 cut(s) 66, 672, 807, 1118
Tru9I TTAA 4 cut(s) 66, 672, 807, 1118
TscAI CASTG 3 cut(s) 136, 253, 268
TseFI GTSAC 2 cut(s) 244, 263
TseI GCWGC 2 cut(s) 295, 421
Tsp45I GTSAC 2 cut(s) 244, 263
TspDTI ATGAA 2 cut(s) 474, 1101
TspRI CASTG 3 cut(s) 136, 253, 268
VneI GTGCAC 1 cut(s) 776
VpaK11BI GGWCC 3 cut(s) 142, 289, 660
XapI RAATTY 2 cut(s) 707, 996
XceI RCATGY 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.