Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Forward (+)

2645078 .. 2646604

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGTAGCTGCGTCTCTAAGGGTAAAGGAGACGATGATTCCGTCCATAACGTCGAGTTTTCCGGTGGCAATGTTCATCTGATTACAACAAAAGAGAGTTGGGATGACAAATTAGCTGAAGCTGATCGTGATGGCAAAATCGTGGTTGCAAACTTCAGTGCGACATGGTGTGGTCCGTGTAAAATTGTGGCACCATTTTTCATCGAGCTCTCAGAGAAACATTCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCGATTTTAGCTCATCATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAAGCTTGTTGGAGCAAACAAACCGGAGCTACAGAAGAAGGTTACTTCTATCATTGATTCTGTGCCTGAAAGTCCTCAACGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

140

Amino Acids

15.33

Weight (kDa)

5.12

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	27 - 126	4.4e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AcuI	CTGAAG	2 cut(s)	138, 139
AluBI	AGCT	7 cut(s)	9, 116, 122, 208, 273, 340, 364
AluI	AGCT	7 cut(s)	9, 116, 122, 208, 273, 340, 364
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	19, 24
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	19, 24
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	192
BsaWI	WCCGGW	2 cut(s)	62, 358
Bse3DI	GCAATG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	225, 274
BshFI	GGCC	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	63, 359
BslFI	GGGAC	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	19, 24
BsmBI	CGTCTC	2 cut(s)	19, 24
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	2 cut(s)	224, 273
BspLI	GGNNCC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	76
BssMI	GATC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	18, 211, 260
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	19, 24
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	2 cut(s)	165, 279
CviJI	RGCY	8 cut(s)	9, 116, 122, 208, 273, 340, 364, 418
CviKI_1	RGCY	8 cut(s)	9, 116, 122, 208, 273, 340, 364, 418
DdeI	CTNAG	3 cut(s)	18, 211, 260
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	138, 139
EcoICRI	GAGCTC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	210
Esp3I	CGTCTC	2 cut(s)	19, 24
FaeI	CATG	2 cut(s)	168, 282
FaiI	YATR	4 cut(s)	48, 166, 233, 280
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	2 cut(s)	164, 278
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	2 cut(s)	63, 359
Hin1II	CATG	2 cut(s)	168, 282
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	38, 392
HpaII	CCGG	2 cut(s)	63, 359
Hpy188I	TCNGA	2 cut(s)	81, 214
Hpy188III	TCNNGA	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	248, 313, 367
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	3 cut(s)	18, 211, 260
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	168, 282
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	347, 361
LpnPI	CCDG	3 cut(s)	76, 372, 414
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	216, 298, 301, 382
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	110, 183
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	288
MspI	CCGG	2 cut(s)	63, 359
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	168, 282
NlaIV	GGNNCC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	38, 392
PkrI	GCNGC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	173
Sse9I	AATT	2 cut(s)	110, 183
SstI	GAGCTC	1 cut(s)	210
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	54, 204
TasI	AATT	2 cut(s)	110, 183
TfiI	GAWTC	2 cut(s)	38, 392
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	3 cut(s)	65, 190, 270
TspGWI	ACGGA	2 cut(s)	31, 165
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.