Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Reverse (-)

27341961 .. 27345268

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1190800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGATCTTGCGCGAGCAAGGGTAAAACTAAAGAAGACGATTATGAAGATAAAATTGAGTTTACTGGTGCGAATGTGCACCTCATCACCACTACCGAAGCTTGGGATCAAAAGATGGAAGAAGCAAAAAAGGATGGCAAAGTTGTGATTGCAAACTTCAGTGCAACATGGTGTGGTCCTTGCAAAATAATTGCACCGCTATACCGCGAGTTATCCGAGCAATACACTTCTCTAATGTTCCTTGTGGTCGATGTTGATGAATTGACTGACTTCAGCACTTCATGGGACATCAAAGCCACTCCTACTTTCTTCTTCCTTCGGGATGGGCAGCAAATCGACAAGCTGGTGGGTGCCAACAAGCCAGAGTTGCAGAAGAAGATAGTTTCCGTTGTAGAGTCGATTGAAACGTGTGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

140

Amino Acids

15.65

Weight (kDa)

4.77

Isoelectric Point (pI)

23.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	29 - 127	8e-24	Thioredoxin
Thioredoxin_2	PF13098	42 - 125	6.3e-06	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	2 cut(s)	14, 207
AciI	CCGC	2 cut(s)	197, 205
AclWI	GGATC	2 cut(s)	13, 114
AcuI	CTGAAG	2 cut(s)	142, 256
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	2 cut(s)	101, 343
AluI	AGCT	2 cut(s)	101, 343
Alw21I	GWGCWC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	13, 114
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	109, 128, 317
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	139, 328
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	70
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	2 cut(s)	14, 207
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	5, 106
BspACI	CCGC	2 cut(s)	197, 205
BspFNI	CGCG	2 cut(s)	14, 207
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	13, 114
BspT107I	GGYRCC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	5, 106
BstC8I	GCNNGC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	139, 328
BstFNI	CGCG	2 cut(s)	14, 207
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	8, 109
BstMBI	GATC	2 cut(s)	5, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	2 cut(s)	14, 207
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	139, 328
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	176
CviAII	CATG	2 cut(s)	168, 282
CviJI	RGCY	4 cut(s)	101, 296, 343, 361
CviKI_1	RGCY	4 cut(s)	101, 296, 343, 361
DpnI	GATC	2 cut(s)	7, 108
DpnII	GATC	2 cut(s)	5, 106
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	142, 256
FaeI	CATG	2 cut(s)	171, 285
FaiI	YATR	4 cut(s)	45, 169, 202, 283
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	167, 281
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	2 cut(s)	146, 335
Fsp4HI	GCNGC	1 cut(s)	329
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	171, 285
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	1 cut(s)	395
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	63, 79
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	2 cut(s)	63, 79
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	6 cut(s)	79, 152, 164, 183, 194, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	171, 285
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	5, 106
LpnPI	CCDG	3 cut(s)	51, 329, 375
Lsp1109I	GCAGC	1 cut(s)	340
MaeII	ACGT	1 cut(s)	407
MalI	GATC	2 cut(s)	7, 108
MboI	GATC	2 cut(s)	5, 106
MboII	GAAGA	7 cut(s)	47, 59, 131, 301, 304, 385, 388
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	54, 189, 260
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	1 cut(s)	92
MvnI	CGCG	2 cut(s)	14, 207
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeII	GATC	2 cut(s)	5, 106
NlaIII	CATG	2 cut(s)	171, 285
NlaIV	GGNNCC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	5
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	2 cut(s)	5, 106
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	84, 103, 345, 410
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	3 cut(s)	54, 189, 260
SsiI	CCGC	2 cut(s)	197, 205
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	3 cut(s)	249, 336, 398
TasI	AATT	3 cut(s)	54, 189, 260
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	60, 270, 273
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.