Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Reverse (-)

41489583 .. 41491511

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCTACTGTGCCGTGTATCACTAGTTTGGTGTTGAACATCAAGATGGGAGCTTGCGCGTCCAAGTCTAAAACTATGGGAGATGACGAGTCTGAACATACTGGTGAGTTTACTGGTGGGAATGTGCACCTCATCACCACCATAGAAAAGTGGGATCAAAAGTTGGCGGAAGCAAAGACAGATGGCAAAGTTGTGATTGCAAACTTCAGTGCAACATGGTGTGGTCCTTGCAAACAGATTGCACCATTATATCGCGAGTTATCTGAGCAATACACTTCTTTAATGTTCCTTTTGATCGACGTTGATGAACTTACTGATTTCAGCACTTCATGGGATATCAAAGCCACTCCAACTTTCTTCTTCCTCCGAGATGGTCAGCAAGTCGACAAGCTCGTCGGAGCCAACAAGCCAGAGTTGCAGAAGAAGATAGTTGCCATTGTAGATTCAGCCCCTTGTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

155

Amino Acids

16.98

Weight (kDa)

5.39

Isoelectric Point (pI)

23.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	45 - 143	8.1e-24	Thioredoxin
Thioredoxin_2	PF13098	58 - 141	6e-06	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccI	GTMKAC	2 cut(s)	5, 384
AccII	CGCG	2 cut(s)	59, 255
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	162
AcuI	CTGAAG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	23
AluBI	AGCT	2 cut(s)	53, 391
AluI	AGCT	2 cut(s)	53, 391
Alw21I	GWGCWC	1 cut(s)	129
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	162
ApaLI	GTGCAC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	116, 127
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	3 cut(s)	40, 176, 365
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	106, 118
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	106, 118
BseSI	GKGCMC	1 cut(s)	129
Bsh1236I	CGCG	2 cut(s)	59, 255
BsiHKAI	GWGCWC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	154, 294
Bsp68I	TCGCGA	1 cut(s)	255
BspACI	CCGC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	59, 255
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	106, 118
BssMI	GATC	2 cut(s)	154, 294
Bst4CI	ACNGT	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	264
BstFNI	CGCG	2 cut(s)	59, 255
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	157, 297
BstMBI	GATC	2 cut(s)	154, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	2 cut(s)	59, 255
BtsIMutI	CAGTG	1 cut(s)	214
BtuMI	TCGCGA	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	1 cut(s)	48
CviAII	CATG	2 cut(s)	216, 330
CviJI	RGCY	6 cut(s)	53, 344, 391, 401, 409, 449
CviKI_1	RGCY	6 cut(s)	53, 344, 391, 401, 409, 449
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	156, 296
DpnII	GATC	2 cut(s)	154, 294
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	2 cut(s)	219, 333
FaiI	YATR	6 cut(s)	77, 99, 143, 217, 250, 331
FatI	CATG	2 cut(s)	215, 329
FblI	GTMKAC	2 cut(s)	5, 384
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	58
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	219, 333
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	89, 443
HphI	GGTGA	2 cut(s)	116, 127
Hpy166II	GTNNAC	4 cut(s)	6, 111, 127, 385
Hpy188I	TCNGA	4 cut(s)	94, 265, 368, 398
Hpy188III	TCNNGA	2 cut(s)	43, 254
Hpy8I	GTNNAC	4 cut(s)	6, 111, 127, 385
Hpy99I	CGWCG	2 cut(s)	302, 398
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	127, 200, 212, 231, 242, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	219, 333
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	154, 294
LmnI	GCTCC	2 cut(s)	50, 398
LpnPI	CCDG	3 cut(s)	87, 99, 423
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	300
MalI	GATC	2 cut(s)	156, 296
MboI	GATC	2 cut(s)	154, 294
MboII	GAAGA	4 cut(s)	349, 352, 433, 436
MhlI	GDGCHC	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	374, 376
MnlI	CCTC	2 cut(s)	140, 374
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	2 cut(s)	44, 102
MvnI	CGCG	2 cut(s)	59, 255
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	2 cut(s)	154, 294
NlaIII	CATG	2 cut(s)	219, 333
NlaIV	GGNNCC	1 cut(s)	400
NruI	TCGCGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	443
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	255
RseI	CAYNNNNRTG	2 cut(s)	44, 102
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	154, 294
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	4 cut(s)	55, 132, 303, 393
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	2 cut(s)	44, 102
SpeI	ACTAGT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	297, 384
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	318, 321
TspRI	CASTG	1 cut(s)	214
VneI	GTGCAC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	224
XmiI	GTMKAC	2 cut(s)	5, 384
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.