Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Reverse (-)

41156938 .. 41159826

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAGCTTGTGCGTCCAAGTCTAAAACTATGGGAGATGACGAGTCTGAACATACTGTTGAGTTTACTGGTGGGAATGTGCACCTCATCACCACCATAGAAAAGTGGGATCAAAAGTTGGCCGAAGCAAAGACAGATGGCAAAGTTGTGATTGCAAACTTCAGTGCAACATGGTGTGGTCCTTGCAAACAGATTGCACCATTATATCGCGAGTTATCTGAGCAATACACTTCTTTAATGTTCCTTGTGGTCGACGTTGATGAACTTACTGATTTCAGTACTTCATGGGATATCAAAGCCACTCCAACTTTCTTCTTCCTCCAAGATGGTCAGCAAGTTGACAAGCTTGTCGGAGCCAACAAGCCAGAGTTGCAGAAGAAGATAGTTGCCATTGTAGATTCAGCCCCTTGTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

139

Amino Acids

15.37

Weight (kDa)

4.99

Isoelectric Point (pI)

18.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	30 - 128	3e-24	Thioredoxin
Thioredoxin_2	PF13098	43 - 126	6.8e-07	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	280
AluBI	AGCT	2 cut(s)	8, 346
AluI	AGCT	2 cut(s)	8, 346
Alw21I	GWGCWC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	2 cut(s)	131, 320
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	109
Bsp68I	TCGCGA	1 cut(s)	210
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	169
BtuMI	TCGCGA	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	171, 285
CviJI	RGCY	7 cut(s)	8, 122, 299, 346, 356, 364, 404
CviKI_1	RGCY	7 cut(s)	8, 122, 299, 346, 356, 364, 404
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	292
FaeI	CATG	2 cut(s)	174, 288
FaiI	YATR	6 cut(s)	32, 54, 98, 172, 205, 286
FatI	CATG	2 cut(s)	170, 284
FblI	GTMKAC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	2 cut(s)	174, 288
HincII	GTYRAC	2 cut(s)	253, 340
HindII	GTYRAC	2 cut(s)	253, 340
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	2 cut(s)	44, 398
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	4 cut(s)	66, 82, 253, 340
Hpy188I	TCNGA	3 cut(s)	49, 220, 353
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	4 cut(s)	66, 82, 253, 340
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	82, 155, 167, 186, 197, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	174, 288
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	5, 353
LpnPI	CCDG	2 cut(s)	54, 378
MaeII	ACGT	1 cut(s)	255
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	304, 307, 388, 391
MhlI	GDGCHC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	329, 331
MnlI	CCTC	2 cut(s)	95, 329
MseI	TTAA	1 cut(s)	236
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	174, 288
NlaIV	GGNNCC	1 cut(s)	355
NruI	TCGCGA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	210
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	4 cut(s)	10, 87, 258, 348
SinI	GGWCC	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	252
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	273, 276
TspRI	CASTG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.