Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Reverse (-)

27276053 .. 27278300

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGAAGTTGCTGTTCTATGTGCTCCGGGCATAATAGCGACGAGATTCATTTTGAGGGTTGTCTTGCCAGTGGAAATGTGCACCTTATAAAGACCATGGAAAGTTGGGAGGCAAAGTTATCAGAAGCAGTCAAGGATGGCAAGATTGTTGTAGCAAATTTCAGTGCATCGTGGTGTAGACCTTGTATAATGATTGCACCAGCCTACTGTGAGCTTGCTGACAAGTATCCTTCTATCGTATTTCTAACCTTGGATGTCGATGATCTTGCTGAGTTGAGTACTTCATGGGATATAAAGGCCACTCCGACATTTATTTTTCTTAAAGATGGAAGACAAGTGGACAAACTTGTTGGAAGCAACAAGCCAGAGCTCCAGAAGAAGACAGCAGCTGTGGCTCATTTAGCAACCAAGTCTCATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

141

Amino Acids

15.25

Weight (kDa)

5.91

Isoelectric Point (pI)

19.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	1 cut(s)	280
AluBI	AGCT	3 cut(s)	214, 370, 389
AluI	AGCT	3 cut(s)	214, 370, 389
Alw21I	GWGCWC	3 cut(s)	26, 84, 372
Alw26I	GTCTC	1 cut(s)	417
Alw44I	GTGCAC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	297
ApaLI	GTGCAC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	2 cut(s)	337, 386
Bbv12I	GWGCWC	3 cut(s)	26, 84, 372
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	2 cut(s)	131, 320
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	2 cut(s)	337, 386
BpmI	CTGGAG	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	96, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	96, 249
BseGI	GGATG	2 cut(s)	142, 259
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	398
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	3 cut(s)	26, 84, 372
BsiSI	CCGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	417
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	26, 84, 372
Bsp143I	GATC	1 cut(s)	262
Bsp19I	CCATGG	1 cut(s)	96
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	96, 249
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	2 cut(s)	96, 249
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	142, 259
BstKTI	GATC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstSCI	CCNGG	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	2 cut(s)	337, 386
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	142, 259
BtsIMutI	CAGTG	2 cut(s)	76, 169
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	97, 285
CviJI	RGCY	7 cut(s)	203, 214, 299, 364, 370, 389, 395
CviKI_1	RGCY	7 cut(s)	203, 214, 299, 364, 370, 389, 395
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	96, 249
Eco24I	GRGCYC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	96, 249
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	96, 249
FaeI	CATG	2 cut(s)	100, 288
FaiI	YATR	8 cut(s)	20, 33, 89, 98, 188, 286, 293, 417
FatI	CATG	2 cut(s)	96, 284
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	149, 266
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	100, 288
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	3 cut(s)	82, 179, 340
Hpy188I	TCNGA	2 cut(s)	124, 306
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	3 cut(s)	82, 179, 340
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	82, 167, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	100, 288
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	2 cut(s)	29, 375
LpnPI	CCDG	5 cut(s)	40, 82, 213, 378, 386
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	176
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	3 cut(s)	342, 388, 391
MhlI	GDGCHC	3 cut(s)	26, 84, 372
MluCI	AATT	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	329, 331
MnlI	CCTC	2 cut(s)	49, 103
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	172
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	100, 288
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	262
ScaI	AGTACT	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	3 cut(s)	26, 84, 372
SetI	ASST	6 cut(s)	87, 184, 216, 251, 372, 391
SfaNI	GCATC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	157
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	96, 249
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	258
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	76, 169
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	38, 273
TspRI	CASTG	2 cut(s)	76, 169
VneI	GTGCAC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.