Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Reverse (-)

27074537 .. 27077864

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G296000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAGCTTGCGTGAGCAAGAGTAAAACTAAAGAACAGGATTCTGAACAAAGTGGTGCTGAGTTTACTGGTGCGAATGTGCACCTCATCACCACCACAGAAAGTTGGGATCAAAAGATGGAAGAAGCAAAAAGGGATGGCAAAACTGTGATTGCAAACTTCAGTGCAACATGGTGTGGTCCTTGCAAAATGATTGCACCACTATATCGCGAGTTATCGGAGCAATACACTTCTCTAATGTTCCTTGTGATCGATGTTGATGAACTGACTGATTTCAGTACTTCATGGGATATCAAAGCCACTCCCACTTTCTTCTTCCTTCGGGATGGCCAGCAAATCGACAAGCTAGTGGGAGCCAACAAGCCAGAGTTGCAGAAGAAGATAATTTCCGTAGTAGATTCTGCCCCGTGCCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

140

Amino Acids

15.52

Weight (kDa)

5.02

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	280
AluBI	AGCT	2 cut(s)	8, 346
AluI	AGCT	2 cut(s)	8, 346
Alw21I	GWGCWC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	328
ApaLI	GTGCAC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	3 cut(s)	112, 131, 320
BfaI	CTAG	1 cut(s)	347
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	355
Bsa29I	ATCGAT	1 cut(s)	252
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	252
BseGI	GGATG	2 cut(s)	142, 331
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	109, 249
Bsp68I	TCGCGA	1 cut(s)	210
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	109, 249
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	10, 332
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	142, 331
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	112, 252
BstMBI	GATC	2 cut(s)	109, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	84
BstUI	CGCG	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	142, 331
BtsIMutI	CAGTG	1 cut(s)	169
BtuMI	TCGCGA	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	10, 332
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	171, 285
CviJI	RGCY	6 cut(s)	8, 299, 330, 346, 356, 364
CviKI_1	RGCY	6 cut(s)	8, 299, 330, 346, 356, 364
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	111, 251
DpnII	GATC	2 cut(s)	109, 249
EaeI	YGGCCR	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	292
FaeI	CATG	2 cut(s)	174, 288
FaiI	YATR	3 cut(s)	172, 205, 286
FatI	CATG	2 cut(s)	170, 284
FokI	GGATG	2 cut(s)	149, 338
FspBI	CTAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	174, 288
HinfI	GANTC	2 cut(s)	41, 398
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	66, 82
Hpy188I	TCNGA	2 cut(s)	46, 220
Hpy188III	TCNNGA	2 cut(s)	209, 323
Hpy8I	GTNNAC	2 cut(s)	66, 82
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	6 cut(s)	82, 155, 167, 186, 197, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	174, 288
Kzo9I	GATC	2 cut(s)	109, 249
LmnI	GCTCC	3 cut(s)	5, 220, 353
LpnPI	CCDG	4 cut(s)	23, 54, 344, 378
MaeI	CTAG	1 cut(s)	347
MalI	GATC	2 cut(s)	111, 251
MboI	GATC	2 cut(s)	109, 249
MboII	GAAGA	5 cut(s)	134, 304, 307, 388, 391
MhlI	GDGCHC	1 cut(s)	84
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	330
MnlI	CCTC	1 cut(s)	95
Mox20I	TGGCCA	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	330
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	2 cut(s)	109, 249
NlaIII	CATG	2 cut(s)	174, 288
NlaIV	GGNNCC	1 cut(s)	355
NruI	TCGCGA	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	41, 398
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	210
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	109, 249
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	3 cut(s)	10, 87, 348
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	384
SspMI	CTAG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	252, 339
TasI	AATT	1 cut(s)	384
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	41, 398
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	273, 276
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	179
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.