Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Forward (+)

8222833 .. 8225939

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAGATGACGAGTCTGAACATACTGTTGAGTTTACTGGTGGGAATGTGCACCTCATCACCACCATAGAAAAGTGGGATCAAAAGTTGGCCGAAGCAAAGACAGATGGCAAAGTTGTGATTGCAAACTTCAGTGCAACATGGTGTGGTCCTTGCAAACAGATTGCACCATTATATCGCGAGTTATCTGAGCAATACACTTCTTTAATGTTCCTTGTGATCGACGTTGATGAACTTACTGATTTCAGTACTTCATGGGATATCAAAGCCACTCCAACTTTCTTCTTCCTCCAAGATGGTCAGCAAGTTGACAAGCTTGTCGGAGCCAACAAGCCAGAGTTGCAGAAGAAGATAGTTGCCATTGTAGATTCAGTCCCTTGTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

129

Amino Acids

14.44

Weight (kDa)

4.72

Isoelectric Point (pI)

17.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	20 - 118	3.9e-24	Thioredoxin
Thioredoxin_2	PF13098	33 - 116	1e-06	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AccII	CGCG	1 cut(s)	180
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	115
AfaI	GTAC	1 cut(s)	250
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	54
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	90
ApaLI	GTGCAC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	2 cut(s)	101, 290
BmcAI	AGTACT	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	79, 219
Bsp68I	TCGCGA	1 cut(s)	180
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	79, 219
Bst4CI	ACNGT	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	82, 222
BstMBI	GATC	2 cut(s)	79, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	139
BtuMI	TCGCGA	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	141, 255
CviJI	RGCY	5 cut(s)	92, 269, 316, 326, 334
CviKI_1	RGCY	5 cut(s)	92, 269, 316, 326, 334
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	81, 221
DpnII	GATC	2 cut(s)	79, 219
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	262
FaeI	CATG	2 cut(s)	144, 258
FaiI	YATR	5 cut(s)	24, 68, 142, 175, 256
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	2 cut(s)	140, 254
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	144, 258
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	14, 368
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	36, 52, 310
Hpy188I	TCNGA	3 cut(s)	19, 190, 323
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	3 cut(s)	36, 52, 310
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	6 cut(s)	52, 125, 137, 156, 167, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	144, 258
Kzo9I	GATC	2 cut(s)	79, 219
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	2 cut(s)	24, 348
MaeII	ACGT	1 cut(s)	225
MalI	GATC	2 cut(s)	81, 221
MboI	GATC	2 cut(s)	79, 219
MboII	GAAGA	4 cut(s)	274, 277, 358, 361
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	299, 301
MnlI	CCTC	2 cut(s)	65, 299
MseI	TTAA	1 cut(s)	206
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	2 cut(s)	79, 219
NlaIII	CATG	2 cut(s)	144, 258
NlaIV	GGNNCC	1 cut(s)	325
NruI	TCGCGA	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	368
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	149
RruI	TCGCGA	1 cut(s)	180
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	79, 219
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	250
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	3 cut(s)	57, 228, 318
SinI	GGWCC	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	222
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	243, 246
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.