FvH4_7g26200

Thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003133
Physical Location & Seq
Reverse (-)
19871762 .. 19872444
683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26200.t1

Sequence Viewer

Length: 429 bp
ATGGGAACTTGTTGTTCTTCTTGTATGTTTTCTGGAGATGATAGTGATAACGGTCAACATAATGTTCGTGAAGCCGGTGGGAATATGCATTTTATAAGGACCATGGATAATTGGGAAACAATGTTATCAGAAGCAATCAAGGAAGACAAACTTGTTGTTGCAAACTTTGGTGCATCATGGTGCAATCCTTGTATAACTATTGCACCGGTCTTTGCTGAGGTAGCAGCTAAACATCCTTCAATATTATTTCTAACCGTGGATGTCGACGACCTCGCTGAGTTGAGTAATTCATGGGACATAAAAGCCACTCCAACATTTGTTTTTCTCAAAAATGGAAGACAAGTCGATACGCTAGTTGGAGGAAACAAGACTGAGCTCCAGAAGAAGATAGCTGCTATGTCTCAGTTAGCAACCATGTCTCGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

143

Amino Acids

15.54

Weight (kDa)

5.23

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 35 - 131 3.8e-21 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AccI GTMKAC 1 cut(s) 264
AgeI ACCGGT 1 cut(s) 205
AgsI TTSAA 1 cut(s) 240
AluBI AGCT 3 cut(s) 227, 376, 392
AluI AGCT 3 cut(s) 227, 376, 392
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 2 cut(s) 405, 423
ApeKI GCWGC 2 cut(s) 224, 392
AsiGI ACCGGT 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 99
AvaII GGWCC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 339, 372
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 2 cut(s) 150, 343
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 236, 379
BcoDI GTCTC 2 cut(s) 405, 423
BfaI CTAG 1 cut(s) 353
BisI GCNGC 2 cut(s) 225, 393
BlsI GCNGC 2 cut(s) 226, 394
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmsI GCATC 1 cut(s) 182
BpiI GAAGAC 2 cut(s) 150, 343
BpmI CTGGAG 2 cut(s) 54, 362
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 102, 255
BsaWI WCCGGW 1 cut(s) 205
Bse118I RCCGGY 2 cut(s) 74, 205
BseDI CCNNGG 2 cut(s) 102, 255
BseGI GGATG 2 cut(s) 232, 265
BseMII CTCAG 4 cut(s) 207, 267, 363, 416
BseXI GCAGC 2 cut(s) 236, 379
BshTI ACCGGT 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 2 cut(s) 75, 206
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 405, 423
BsmFI GGGAC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 378
Bsp19I CCATGG 1 cut(s) 102
BspCNI CTCAG 4 cut(s) 208, 268, 364, 415
BsrFI RCCGGY 2 cut(s) 74, 205
BssAI RCCGGY 2 cut(s) 74, 205
BssECI CCNNGG 2 cut(s) 102, 255
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 53, 256
BstDEI CTNAG 4 cut(s) 216, 276, 372, 402
BstDSI CCRYGG 2 cut(s) 102, 255
BstF5I GGATG 2 cut(s) 232, 265
BstMAI GTCTC 2 cut(s) 405, 423
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 236, 379
BstV2I GAAGAC 2 cut(s) 150, 343
BtgI CCRYGG 2 cut(s) 102, 255
BtsCI GGATG 2 cut(s) 232, 265
Cfr10I RCCGGY 2 cut(s) 74, 205
Cfr13I GGNCC 1 cut(s) 99
CspAI ACCGGT 1 cut(s) 205
CviAII CATG 4 cut(s) 103, 177, 291, 415
CviJI RGCY 5 cut(s) 74, 227, 305, 376, 392
CviKI_1 RGCY 5 cut(s) 74, 227, 305, 376, 392
DdeI CTNAG 4 cut(s) 216, 276, 372, 402
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 4 cut(s) 106, 180, 294, 418
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 102, 176, 290, 414
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 225, 393
FokI GGATG 2 cut(s) 219, 272
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 2 cut(s) 225, 393
FspBI CTAG 1 cut(s) 353
GluI GCNGC 2 cut(s) 225, 393
GsuI CTGGAG 2 cut(s) 54, 362
HapII CCGG 2 cut(s) 75, 206
Hin1II CATG 4 cut(s) 106, 180, 294, 418
HincII GTYRAC 2 cut(s) 56, 265
HindII GTYRAC 2 cut(s) 56, 265
HpaII CCGG 2 cut(s) 75, 206
Hpy166II GTNNAC 2 cut(s) 56, 265
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 33, 68, 379
Hpy8I GTNNAC 2 cut(s) 56, 265
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 2 cut(s) 53, 256
HpyCH4V TGCA 5 cut(s) 88, 161, 173, 183, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 4 cut(s) 216, 276, 372, 402
Hsp92II CATG 4 cut(s) 106, 180, 294, 418
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 4 cut(s) 18, 88, 219, 392
Lsp1109I GCAGC 2 cut(s) 236, 379
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 353
MboII GAAGA 5 cut(s) 9, 155, 348, 394, 397
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 2 cut(s) 109, 286
MmeI TCCRAC 2 cut(s) 335, 337
MnlI CCTC 3 cut(s) 211, 281, 353
Mph1103I ATGCAT 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 2 cut(s) 75, 206
MwoI GCNNNNNNNGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 102
NlaIII CATG 4 cut(s) 106, 180, 294, 418
NsiI ATGCAT 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 205
PkrI GCNGC 2 cut(s) 226, 394
PsiI TTATAA 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 178
SacI GAGCTC 1 cut(s) 378
SalI GTCGAC 1 cut(s) 263
SatI GCNGC 2 cut(s) 225, 393
Sau96I GGNCC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 378
SetI ASST 5 cut(s) 222, 229, 273, 378, 394
SfaNI GCATC 1 cut(s) 182
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 178
Sse9I AATT 2 cut(s) 109, 286
SspI AATATT 1 cut(s) 243
SspMI CTAG 1 cut(s) 353
SstI GAGCTC 1 cut(s) 378
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 53, 256
TaqI TCGA 2 cut(s) 264, 345
TasI AATT 2 cut(s) 109, 286
TseI GCWGC 2 cut(s) 224, 392
TspDTI ATGAA 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.