Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Forward (+)

3173601 .. 3175147

Gene Structure 1547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0040500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTACAATGACTACGGCAATTACAGACCAGGTTACTCCACCGGTGGGGTTGGAGCTTACACCGACCAATGGGGAAATCCAAGGCAAAGTTCTCACCCAGGTGTTGTTGAGCCAGTTAGAGGCTACGGCTATGCTGCTGATGACTCATGGCAGCGCAGGTCTTCGAGCCCCGTCAGAGGTGGTTATGGTTATGCTGACCAACCCTCCAGGATTGCACCATCCAATGGTGTGAATTGGCGCCAACAGCCCCATCAAACCGGACCCTACAGTGGCACTTCAGCAGGCTATAATGACTATAATGACTACAGCAACAAGCCAGGTCACAAGCATAGCGGAAAGACTGACCACTATGATGACCACTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGAGTGACAACTATGATGATCACTACCGCAAAAATGAAAGTAGCAGCTATGGACCAGCTGTCAACATGATATCAAACATGGTATCAAGCCGGCCTAAGCCAAGCCGTACTGTATATTCTACTGGTGCACTCCCCGTTCGCGGTGATGGCAGGCTCACTGTTCCAACAGATGACATGGAGAAGGCCTTGCACTACTTGAAGGAAAGTGCAAAGACTTCACCATGGCCACGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

210

Amino Acids

23.36

Weight (kDa)

9.15

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccII	CGCG	1 cut(s)	537
AciI	CCGC	3 cut(s)	336, 424, 537
AcoI	YGGCCR	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	7 cut(s)	48, 72, 122, 179, 227, 272, 536
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	595
AhdI	GACNNNNNGTC	1 cut(s)	455
AjnI	CCWGG	4 cut(s)	31, 100, 209, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	59, 444, 455
AluI	AGCT	3 cut(s)	59, 444, 455
Alw21I	GWGCWC	1 cut(s)	526
Alw44I	GTGCAC	1 cut(s)	522
AoxI	GGCC	3 cut(s)	488, 579, 620
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	3 cut(s)	137, 154, 441
AsiGI	ACCGGT	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	159, 243
AspS9I	GGNCC	2 cut(s)	263, 449
AsuHPI	GGTGA	3 cut(s)	89, 551, 606
AvaII	GGWCC	2 cut(s)	263, 449
BaeGI	GKGCMC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	124, 166, 453
BccI	CCATC	3 cut(s)	229, 261, 536
BceAI	ACGGC	3 cut(s)	34, 145, 486
BciT130I	CCWGG	4 cut(s)	33, 102, 211, 321
BclI	TGATCA	1 cut(s)	415
BfmI	CTRYAG	3 cut(s)	268, 307, 364
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	138, 155, 442
BlsI	GCNGC	3 cut(s)	139, 156, 443
Bme1390I	CCNGG	4 cut(s)	33, 102, 211, 321
Bme18I	GGWCC	2 cut(s)	263, 449
BmeRI	GACNNNNNGTC	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	263, 449
BmiI	GGNNCC	2 cut(s)	242, 265
BmrFI	CCNGG	4 cut(s)	33, 102, 211, 321
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	83, 100, 617
BsaWI	WCCGGW	2 cut(s)	44, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 72, 122, 179, 227, 272, 536
Bse118I	RCCGGY	2 cut(s)	44, 486
Bse1I	ACTGG	2 cut(s)	116, 523
BseBI	CCWGG	4 cut(s)	33, 102, 211, 321
BseDI	CCNNGG	3 cut(s)	83, 100, 617
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	7 cut(s)	48, 72, 122, 179, 227, 272, 536
BseNI	ACTGG	2 cut(s)	116, 523
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	3 cut(s)	124, 166, 453
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	3 cut(s)	490, 581, 622
BshNI	GGYRCC	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	3 cut(s)	45, 261, 487
BslI	CCNNNNNNNGG	7 cut(s)	48, 72, 122, 179, 227, 272, 536
BsnI	GGCC	3 cut(s)	490, 581, 622
Bsp1286I	GDGCHC	2 cut(s)	173, 526
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	3 cut(s)	336, 424, 537
BspANI	GGCC	3 cut(s)	490, 581, 622
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	242, 265
BspMI	ACCTGC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	240
BsrFI	RCCGGY	2 cut(s)	44, 486
BsrI	ACTGG	2 cut(s)	116, 523
BssAI	RCCGGY	2 cut(s)	44, 486
BssECI	CCNNGG	3 cut(s)	83, 100, 617
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	83, 617
Bst2UI	CCWGG	4 cut(s)	33, 102, 211, 321
Bst4CI	ACNGT	3 cut(s)	272, 508, 556
BstACI	GRCGYC	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	286, 488, 548
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	159, 243
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 543
BstNI	CCWGG	4 cut(s)	33, 102, 211, 321
BstSCI	CCNGG	4 cut(s)	31, 100, 209, 319
BstSFI	CTRYAG	3 cut(s)	268, 307, 364
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	124, 166, 453
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	490, 581, 622
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	277, 552
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	286, 488, 548
CfoI	GCGC	2 cut(s)	159, 243
Cfr10I	RCCGGY	2 cut(s)	44, 486
Cfr13I	GGNCC	2 cut(s)	263, 449
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	504
CspAI	ACCGGT	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	5 cut(s)	150, 463, 475, 571, 618
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	1 cut(s)	492
DinI	GGCGCC	1 cut(s)	242
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
DriI	GACNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	620
Eam1105I	GACNNNNNGTC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	83, 617
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	263, 449
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	4 cut(s)	31, 100, 209, 319
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	83, 617
EcoT38I	GRGCYC	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	83, 617
FaeI	CATG	5 cut(s)	153, 466, 478, 574, 621
FatI	CATG	5 cut(s)	149, 462, 474, 570, 617
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	138, 155, 442
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	138, 155, 442
GlaI	GCGC	2 cut(s)	158, 242
GluI	GCNGC	3 cut(s)	138, 155, 442
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	490, 581, 622
HapII	CCGG	3 cut(s)	45, 261, 487
HhaI	GCGC	2 cut(s)	159, 243
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	5 cut(s)	153, 466, 478, 574, 621
Hin6I	GCGC	2 cut(s)	157, 241
HinP1I	GCGC	2 cut(s)	157, 241
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	3 cut(s)	45, 261, 487
HphI	GGTGA	3 cut(s)	89, 551, 606
Hpy166II	GTNNAC	2 cut(s)	460, 524
Hpy188I	TCNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	460, 524
HpyAV	CCTTC	2 cut(s)	571, 589
HpyCH4III	ACNGT	3 cut(s)	272, 508, 556
HpyCH4V	TGCA	4 cut(s)	218, 524, 586, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 543
HpyF3I	CTNAG	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	5 cut(s)	153, 466, 478, 574, 621
HspAI	GCGC	2 cut(s)	157, 241
KasI	GGCGCC	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	486
KroNI	GCCGGC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	124, 166, 453
MabI	ACCWGGT	1 cut(s)	31
MaeIII	GTNAC	4 cut(s)	35, 323, 380, 401
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	173, 526
MlsI	TGGCCA	1 cut(s)	622
MluCI	AATT	2 cut(s)	22, 235
MluNI	TGGCCA	1 cut(s)	622
Mly113I	GGCGCC	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	34, 584
MnlI	CCTC	3 cut(s)	116, 173, 217
Mox20I	TGGCCA	1 cut(s)	622
MroNI	GCCGGC	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	622
MslI	CAYNNNNRTG	2 cut(s)	102, 354
Msp20I	TGGCCA	1 cut(s)	622
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	45, 261, 487
MspR9I	CCNGG	4 cut(s)	33, 102, 211, 321
MvaI	CCWGG	4 cut(s)	33, 102, 211, 321
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	247, 543
NaeI	GCCGGC	1 cut(s)	488
NarI	GGCGCC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	1 cut(s)	415
NgoMIV	GCCGGC	1 cut(s)	486
NlaIII	CATG	5 cut(s)	153, 466, 478, 574, 621
NlaIV	GGNNCC	2 cut(s)	242, 265
NmuCI	GTSAC	2 cut(s)	323, 401
OliI	CACNNNNGTG	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	581
PdiI	GCCGGC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	139, 156, 443
PleI	GAGTC	1 cut(s)	140
PluTI	GGCGCC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	4 cut(s)	31, 100, 209, 319
PspGI	CCWGG	4 cut(s)	31, 100, 209, 319
PspN4I	GGNNCC	2 cut(s)	242, 265
PspPI	GGNCC	2 cut(s)	263, 449
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	2 cut(s)	102, 354
SatI	GCNGC	3 cut(s)	138, 155, 442
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	2 cut(s)	263, 449
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	4 cut(s)	33, 102, 211, 321
SduI	GDGCHC	2 cut(s)	173, 526
SetI	ASST	8 cut(s)	37, 61, 106, 164, 184, 325, 446, 457
SexAI	ACCWGGT	1 cut(s)	31
SfcI	CTRYAG	3 cut(s)	268, 307, 364
SfoI	GGCGCC	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	263, 449
SmiMI	CAYNNNNRTG	2 cut(s)	102, 354
Sse9I	AATT	2 cut(s)	22, 235
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	3 cut(s)	336, 424, 537
SspDI	GGCGCC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	31, 100, 209, 319
StyI	CCWWGG	2 cut(s)	83, 617
TaaI	ACNGT	3 cut(s)	272, 508, 556
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	22, 235
TscAI	CASTG	2 cut(s)	277, 559
TseFI	GTSAC	2 cut(s)	323, 401
TseI	GCWGC	3 cut(s)	137, 154, 441
Tsp45I	GTSAC	2 cut(s)	323, 401
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	277, 559
Van91I	CCANNNNNTGG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	2 cut(s)	263, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.