Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Reverse (-)

18416001 .. 18418089

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAGCTTGCGGGAGTAAGCCTAAAACCAAAGAAGATGATTCTGAAGATAAACTTGAGTTTGCTGGTGCCAATGTGCACCTCATCACCACTACGGAAATTTGGGATCAAAAGATGGAAGAAGCAAAAAGGGACGGCAAAATTGTGATTGCAAACTTCAGTGCAACATGGTGTGGTCCTTGCAAAATGATTGCACCACTATACCGCGAGTTATCCGAGCAATACCCTTCTCTGATGTTCCTTGTGGTTGACGTTGATGAATTGACTGAATTCAGCACTTCATGGGACATCAAAGCCACTCCCACTTTCTTCTTCCTTCGGGATGGGCAGCAAATCGACAAGCTAGTTGGCGCCAACAAGCCAGAGTTGCAGAAGAAGATAGTTGCTGTTGTAGATTCAATTCCAGCGTGTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009536 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016020 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

140

Amino Acids

15.58

Weight (kDa)

4.84

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 350
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	12, 205
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	99, 269
AcuI	CTGAAG	2 cut(s)	66, 142
AcyI	GRCGYC	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	399
AluBI	AGCT	2 cut(s)	8, 343
AluI	AGCT	2 cut(s)	8, 343
Alw21I	GWGCWC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	114
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	99, 269
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	81
BanI	GGYRCC	2 cut(s)	68, 350
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	109, 317
BceAI	ACGGC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	70, 352
BpuEI	CTTGAG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	351
BseGI	GGATG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	207
BshNI	GGYRCC	2 cut(s)	68, 350
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	2 cut(s)	146, 299
BsmFI	GGGAC	2 cut(s)	146, 299
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	12, 205
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	70, 352
BspPI	GGATC	1 cut(s)	114
BspT107I	GGYRCC	2 cut(s)	68, 350
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	176
CviAII	CATG	2 cut(s)	168, 282
CviJI	RGCY	5 cut(s)	8, 22, 296, 343, 361
CviKI_1	RGCY	5 cut(s)	8, 22, 296, 343, 361
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	66, 142
EcoRI	GAATTC	1 cut(s)	269
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
FaeI	CATG	2 cut(s)	171, 285
FaiI	YATR	3 cut(s)	169, 202, 283
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	2 cut(s)	146, 299
FatI	CATG	2 cut(s)	167, 281
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	354
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	171, 285
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	41, 395
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	79, 250
Hpy188I	TCNGA	3 cut(s)	46, 217, 234
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	2 cut(s)	79, 250
HpyAV	CCTTC	2 cut(s)	237, 326
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	6 cut(s)	79, 152, 164, 183, 194, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	171, 285
HspAI	GCGC	1 cut(s)	351
KasI	GGCGCC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	2 cut(s)	51, 375
Lsp1109I	GCAGC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	252
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	7 cut(s)	47, 59, 131, 301, 304, 385, 388
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	5 cut(s)	99, 141, 260, 269, 399
Mly113I	GGCGCC	1 cut(s)	351
MnlI	CCTC	1 cut(s)	92
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	351
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	171, 285
NlaIV	GGNNCC	2 cut(s)	70, 352
PfeI	GAWTC	2 cut(s)	41, 395
PkrI	GCNGC	1 cut(s)	330
PluTI	GGCGCC	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	70, 352
PspPI	GGNCC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	10, 84, 255, 345
SfoI	GGCGCC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	99, 141, 260, 269, 399
SsiI	CCGC	2 cut(s)	12, 205
SspDI	GGCGCC	1 cut(s)	350
SspMI	CTAG	1 cut(s)	344
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	336
TasI	AATT	5 cut(s)	99, 141, 260, 269, 399
TfiI	GAWTC	2 cut(s)	41, 395
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	270, 273
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	99, 269
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.