Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000419.1

Orthogroup ID

OG0003133

Physical Location & Seq

Genomic Coordinates Forward (+)

18096 .. 18837

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000419.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgttaacttcctcgggtctggctgtgcacactcagatgggagcctgttgttcttcttgtatgttttgtggacataatggtgatgagggtcaacatgatgttcatgaagccggtgggaatgtgcactttataaagaccatggatggttgggaggcgaagttatcagaagcaattgaggaagacaaacttgttgttgcaaattttggtgcatcatggtgtaatccttctaaaagtattgcaccggcctactctgagcttgcagctaaacatccttcaatcttatttctaaccttggatgtcgatgacctcgctgagttgagtacttcatgggatataaaagccactccaacatttgtttttctcaaaaatggaagacaagtcgatacacttgttggaggaaacaagcaggagctccagaagaaaatagctgctgtggctcagttagcaaccatgtctagtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

154

Amino Acids

16.49

Weight (kDa)

5.22

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08710 AT3G08710 AT3G08710
fragaria_vesca	FvH4_6g09570 FvH4_6g09570 FvH4_7g26200
malus_domestica	MD01G1170300.v1.1 MD04G1176500.v1.1 MD07G1237200.v1.1 MD12G1190800.v1.1
prunus_persica	Prupe.2G266300_v2.0.a1 Prupe.6G296000_v2.0.a1 Prupe.6G296000_v2.0.a1
pyrus_communis	pycom04g15570 pycom12g17810
rosa_chinensis	RchiOBHm_Chr1g0372651 RchiOBHm_Chr3g0460171
rosa_laevigata	RLG00000025038 RLG00000026883
rosa_multiflora	Rmu_sc0003763.1_g000008 Rmu_ssc0000419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284790 Rroxscaffold_6G00419770
rosa_rugosa	Rorug01G0373600.1 Rorug03G0040400 Rorug03G0040500 Rorug03G0040500
rosa_samantha	Rh1AG382100 Rh1BG345500 Rh1CG358900 Rh1DG376700 Rh3AG098400 Rh3BG101500 Rh3CG103700 Rh3DG102800
rosa_wichuraiana	Rw1G033610 Rw3G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	276
AluBI	AGCT	4 cut(s)	256, 263, 412, 428
AluI	AGCT	4 cut(s)	256, 263, 412, 428
Alw21I	GWGCWC	3 cut(s)	30, 126, 414
Alw44I	GTGCAC	2 cut(s)	26, 122
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	243
ApaLI	GTGCAC	2 cut(s)	26, 122
ApeKI	GCWGC	2 cut(s)	260, 428
ApoI	RAATTY	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	13
BaeGI	GKGCMC	2 cut(s)	30, 126
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	186, 379
Bbv12I	GWGCWC	3 cut(s)	30, 126, 414
BbvI	GCAGC	2 cut(s)	272, 415
BccI	CCATC	2 cut(s)	31, 137
BfaI	CTAG	1 cut(s)	456
BisI	GCNGC	2 cut(s)	261, 429
BlsI	GCNGC	2 cut(s)	262, 430
BmcAI	AGTACT	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	2 cut(s)	186, 379
BpmI	CTGGAG	1 cut(s)	398
BsaJI	CCNNGG	3 cut(s)	12, 138, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse118I	RCCGGY	2 cut(s)	110, 241
BseDI	CCNNGG	3 cut(s)	12, 138, 291
BseGI	GGATG	3 cut(s)	148, 268, 301
BseMII	CTCAG	4 cut(s)	47, 243, 303, 452
BseSI	GKGCMC	2 cut(s)	30, 126
BseXI	GCAGC	2 cut(s)	272, 415
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	3 cut(s)	30, 126, 414
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	111, 242
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	3 cut(s)	30, 126, 414
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	4 cut(s)	46, 244, 304, 451
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	43
BsrFI	RCCGGY	2 cut(s)	110, 241
BssAI	RCCGGY	2 cut(s)	110, 241
BssECI	CCNNGG	3 cut(s)	12, 138, 291
BssT1I	CCWWGG	2 cut(s)	138, 291
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	33, 252, 312, 438
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	3 cut(s)	148, 268, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 443
BstSLI	GKGCMC	2 cut(s)	30, 126
BstV1I	GCAGC	2 cut(s)	272, 415
BstV2I	GAAGAC	2 cut(s)	186, 379
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	148, 268, 301
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	110, 241
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	6 cut(s)	95, 104, 139, 213, 327, 451
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	4 cut(s)	33, 252, 312, 438
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	138, 291
Eco24I	GRGCYC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	138, 291
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	138, 291
FaeI	CATG	6 cut(s)	98, 107, 142, 216, 330, 454
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	6 cut(s)	94, 103, 138, 212, 326, 450
Fnu4HI	GCNGC	2 cut(s)	261, 429
FokI	GGATG	3 cut(s)	155, 255, 308
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	261, 429
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	2 cut(s)	261, 429
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	111, 242
Hin1II	CATG	6 cut(s)	98, 107, 142, 216, 330, 454
HincII	GTYRAC	2 cut(s)	6, 92
HindII	GTYRAC	2 cut(s)	6, 92
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	111, 242
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	5 cut(s)	6, 28, 71, 92, 124
Hpy188I	TCNGA	3 cut(s)	36, 166, 253
Hpy188III	TCNNGA	2 cut(s)	104, 415
Hpy8I	GTNNAC	5 cut(s)	6, 28, 71, 92, 124
HpyAV	CCTTC	2 cut(s)	234, 282
HpyCH4V	TGCA	6 cut(s)	28, 124, 197, 209, 239, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 443
HpyF3I	CTNAG	4 cut(s)	33, 252, 312, 438
Hsp92II	CATG	6 cut(s)	98, 107, 142, 216, 330, 454
KspAI	GTTAAC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	41, 409, 417
LpnPI	CCDG	6 cut(s)	5, 58, 124, 255, 392, 428
Lsp1109I	GCAGC	2 cut(s)	272, 415
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	456
MboII	GAAGA	4 cut(s)	45, 191, 384, 430
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	3 cut(s)	30, 126, 414
MluCI	AATT	3 cut(s)	171, 199, 460
MmeI	TCCRAC	2 cut(s)	371, 373
MnlI	CCTC	6 cut(s)	22, 79, 145, 169, 317, 389
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	3 cut(s)	35, 78, 214
MspI	CCGG	2 cut(s)	111, 242
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	434, 443
NcoI	CCATGG	1 cut(s)	138
NlaIII	CATG	6 cut(s)	98, 107, 142, 216, 330, 454
NlaIV	GGNNCC	1 cut(s)	43
PagI	TCATGA	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	262, 430
PsiI	TTATAA	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	3 cut(s)	35, 78, 214
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	2 cut(s)	261, 429
ScaI	AGTACT	1 cut(s)	322
SduI	GDGCHC	3 cut(s)	30, 126, 414
SetI	ASST	6 cut(s)	258, 265, 293, 309, 414, 430
SfaNI	GCATC	1 cut(s)	218
SmiMI	CAYNNNNRTG	3 cut(s)	35, 78, 214
Sse9I	AATT	3 cut(s)	171, 199, 460
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	138, 291
TaqI	TCGA	2 cut(s)	300, 381
TasI	AATT	3 cut(s)	171, 199, 460
TatI	WGTACW	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseI	GCWGC	2 cut(s)	260, 428
TspDTI	ATGAA	3 cut(s)	92, 120, 315
VneI	GTGCAC	2 cut(s)	26, 122
XapI	RAATTY	1 cut(s)	199
XspI	CTAG	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.