AT3G10110

Mitochondrial import inner membrane translocase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005664
Physical Location & Seq
Forward (+)
3116110 .. 3117894
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10110.1

Sequence Viewer

Length: 522 bp
ATGGCTGATTCGAGTGCTGCTGAACCAACAACCGGTGCTTCTTCTCCCCCCGTGGCTTCTGATGAGAACTCTACCCAGATTCAACCGATCCGGATGCCAACCATCGAGGAGATCCGAGCTCAAGAGGTTTGGAACAACTGCGCCGTTCGCGCTGTTACTAGTGGAGTCATGGGAGGAGGACTCGGGTTGATGATGGGTTTGTTCTTGGGGGCATTAGATAATCCTATTACGCATGATACTATGACGGCTAGGCAGCAGTTTGTGTTCACGGCAAAACAAATGGGGCAAAGGAGTTGGAATTCCTGTAAGACATTTGCAGTTATGGGTTTGGTTTTCTCTGCTGCAGAATGCATTGTCGAAAAGGCAAGAGCTAAGCATGACACTGTAAACACCGCTATAGCTGGATGTGTTACCGGTGGTTCAATGTCCGCCCGAGGTGGGCCAAAAGCTGCGTGTATAGGTTGCGCTGGATTTGCAACTTTCTCTGTACTCATAGAGAAGTTCTTTGATAGGCATACATAA

Protein Analysis

173

Amino Acids

18.18

Weight (kDa)

6.81

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 47 - 162 3.4e-28 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 2 cut(s) 393, 429
AclWI GGATC 2 cut(s) 82, 106
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 1 cut(s) 489
AfiI CCNNNNNNNGG 2 cut(s) 32, 438
AgeI ACCGGT 2 cut(s) 32, 413
AgsI TTSAA 2 cut(s) 83, 423
AhlI ACTAGT 1 cut(s) 158
AluBI AGCT 4 cut(s) 119, 371, 401, 449
AluI AGCT 4 cut(s) 119, 371, 401, 449
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 2 cut(s) 82, 106
Ama87I CYCGRG 2 cut(s) 182, 432
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 17, 253, 341, 449
ApoI RAATTY 1 cut(s) 298
AsiGI ACCGGT 2 cut(s) 32, 413
AspLEI GCGC 3 cut(s) 143, 152, 467
AspS9I GGNCC 1 cut(s) 440
AvaI CYCGRG 2 cut(s) 182, 432
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 4 cut(s) 4, 265, 328, 436
BccI CCATC 2 cut(s) 110, 187
BceAI ACGGC 3 cut(s) 128, 261, 285
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 2 cut(s) 159, 249
BfmI CTRYAG 2 cut(s) 342, 396
BisI GCNGC 4 cut(s) 18, 254, 342, 450
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 4 cut(s) 19, 255, 343, 451
BmeT110I CYCGRG 2 cut(s) 182, 432
BmgT120I GGNCC 1 cut(s) 440
BmsI GCATC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 165, 197
Bpu1102I GCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 51, 433
BsaWI WCCGGW 3 cut(s) 32, 90, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 438
Bse118I RCCGGY 2 cut(s) 32, 413
BseAI TCCGGA 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 51, 433
BseGI GGATG 2 cut(s) 99, 410
BseLI CCNNNNNNNGG 2 cut(s) 32, 438
BseRI GAGGAG 2 cut(s) 122, 189
BseXI GCAGC 4 cut(s) 4, 265, 328, 436
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 442
BshTI ACCGGT 2 cut(s) 32, 413
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 182, 432
BsiSI CCGG 3 cut(s) 33, 91, 414
BslI CCNNNNNNNGG 2 cut(s) 32, 438
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 1 cut(s) 442
BsoBI CYCGRG 2 cut(s) 182, 432
Bsp1286I GDGCHC 1 cut(s) 121
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 87, 111
Bsp1720I GCTNAGC 1 cut(s) 372
BspACI CCGC 2 cut(s) 393, 429
BspANI GGCC 1 cut(s) 442
BspEI TCCGGA 1 cut(s) 90
BspFNI CGCG 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 2 cut(s) 82, 106
BsrFI RCCGGY 2 cut(s) 32, 413
BssAI RCCGGY 2 cut(s) 32, 413
BssECI CCNNGG 2 cut(s) 51, 433
BssMI GATC 2 cut(s) 87, 111
Bst4CI ACNGT 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 372
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 99, 410
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 3 cut(s) 143, 152, 467
BstKTI GATC 2 cut(s) 90, 114
BstMBI GATC 2 cut(s) 87, 111
BstMWI GCNNNNNNNGC 3 cut(s) 147, 149, 473
BstSFI CTRYAG 2 cut(s) 342, 396
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 4, 265, 328, 436
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 99, 410
BtsIMutI CAGTG 1 cut(s) 381
CfoI GCGC 3 cut(s) 143, 152, 467
Cfr10I RCCGGY 2 cut(s) 32, 413
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 488
CspAI ACCGGT 2 cut(s) 32, 413
CviAII CATG 3 cut(s) 169, 233, 377
CviJI RGCY 8 cut(s) 5, 56, 119, 248, 371, 401, 442, 449
CviKI_1 RGCY 8 cut(s) 5, 56, 119, 248, 371, 401, 442, 449
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 1 cut(s) 372
DpnI GATC 2 cut(s) 89, 113
DpnII GATC 2 cut(s) 87, 111
EciI GGCGGA 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 119
Eco88I CYCGRG 2 cut(s) 182, 432
EcoICRI GAGCTC 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 3 cut(s) 172, 236, 380
FatI CATG 3 cut(s) 168, 232, 376
Fnu4HI GCNGC 4 cut(s) 18, 254, 342, 450
FokI GGATG 2 cut(s) 106, 417
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 4 cut(s) 18, 254, 342, 450
FspBI CTAG 2 cut(s) 159, 249
GlaI GCGC 3 cut(s) 142, 151, 466
GluI GCNGC 4 cut(s) 18, 254, 342, 450
HaeIII GGCC 1 cut(s) 442
HapII CCGG 3 cut(s) 33, 91, 414
HhaI GCGC 3 cut(s) 143, 152, 467
Hin1II CATG 3 cut(s) 172, 236, 380
Hin6I GCGC 3 cut(s) 141, 150, 465
HinP1I GCGC 3 cut(s) 141, 150, 465
HinfI GANTC 4 cut(s) 8, 79, 165, 180
HpaII CCGG 3 cut(s) 33, 91, 414
Hpy166II GTNNAC 2 cut(s) 267, 388
Hpy188I TCNGA 2 cut(s) 61, 116
Hpy188III TCNNGA 2 cut(s) 91, 122
Hpy8I GTNNAC 2 cut(s) 267, 388
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 317, 344, 351, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 149, 473
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 3 cut(s) 172, 236, 380
HspAI GCGC 3 cut(s) 141, 150, 465
Kpn2I TCCGGA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 87, 111
LpnPI CCDG 7 cut(s) 46, 89, 104, 316, 387, 427, 453
Lsp1109I GCAGC 4 cut(s) 4, 265, 328, 436
LweI GCATC 1 cut(s) 84
MaeI CTAG 2 cut(s) 159, 249
MaeIII GTNAC 2 cut(s) 154, 409
MalI GATC 2 cut(s) 89, 113
MboI GATC 2 cut(s) 87, 111
MboII GAAGA 1 cut(s) 33
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 298
MlyI GAGTC 2 cut(s) 174, 174
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 5 cut(s) 100, 118, 167, 170, 428
Mph1103I ATGCAT 1 cut(s) 353
MroI TCCGGA 1 cut(s) 90
MspI CCGG 3 cut(s) 33, 91, 414
Mva1269I GAATGC 1 cut(s) 353
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 147, 149, 473
NdeII GATC 2 cut(s) 87, 111
NlaIII CATG 3 cut(s) 172, 236, 380
NsiI ATGCAT 1 cut(s) 353
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 8, 79
PinAI ACCGGT 2 cut(s) 32, 413
PkrI GCNGC 4 cut(s) 19, 255, 343, 451
PleI GAGTC 2 cut(s) 173, 174
PpsI GAGTC 2 cut(s) 173, 174
Psp124BI GAGCTC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
SacI GAGCTC 1 cut(s) 121
SatI GCNGC 4 cut(s) 18, 254, 342, 450
Sau3AI GATC 2 cut(s) 87, 111
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 2 cut(s) 174, 174
SduI GDGCHC 1 cut(s) 121
SetI ASST 7 cut(s) 121, 129, 373, 403, 439, 451, 463
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 2 cut(s) 342, 396
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 1 cut(s) 298
SsiI CCGC 2 cut(s) 393, 429
SspMI CTAG 2 cut(s) 159, 249
SstI GAGCTC 1 cut(s) 121
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 3 cut(s) 11, 105, 357
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 487
TfiI GAWTC 2 cut(s) 8, 79
TscAI CASTG 1 cut(s) 388
TseI GCWGC 4 cut(s) 17, 253, 341, 449
TspRI CASTG 1 cut(s) 388
XapI RAATTY 1 cut(s) 298
XspI CTAG 2 cut(s) 159, 249
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.