Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

3581280 .. 3584514

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G051100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCACGAATACGGAAAATGAATCTACAGTCTCAAGAGAAGTAGAAAAGCCTCCAATTGAGCCTATACGGTTGCCTTCGGTCGAGGAGATTCGAGGCCAAGACATTTGGAACAACTGTGCTGTGCGTAGTGTTGTTAGTGGAGTTATGGGTGGTGGGCTTGGATTGATGATGGGCTTGCTTCTTGGGGCGTTAGACACTCCTCTAATGCAAGACGAAATGACTGGCAGACAGCAGTTCATATACCAAGCAAAGCAGATGGGCCGGAGGAGTTGGAGTTCTGCAAGAGCATTTGCAGTTATGGGGTTTGTTTTCTCAGCTGCTGAGTGTGTTGTTGAAAAGGCACGAGCTAAACATGACACAACAAATACAGTTGTTGCTGGATGTGTAACTGGAGGTGCGCTGTCAGCAAAAGGCGGTCCACAAGCAGCCTGTGTTGGCTGTGCTGGTTTTGCTGCATTTTCAGTGCTGATAGAGAAGTTTTTGGATAGACATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

167

Amino Acids

17.67

Weight (kDa)

6.13

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	2 cut(s)	320, 350
AluI	AGCT	2 cut(s)	320, 350
Alw26I	GTCTC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	3 cut(s)	3, 97, 262
ApeKI	GCWGC	3 cut(s)	320, 428, 455
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	262, 419
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	307, 440, 442
BccI	CCATC	2 cut(s)	166, 253
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	321, 429, 456
BlsI	GCNGC	3 cut(s)	322, 430, 457
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	262, 419
BpmI	CTGGAG	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	2 cut(s)	229, 397
BseGI	GGATG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	315, 330
BseNI	ACTGG	2 cut(s)	229, 397
BseRI	GAGGAG	3 cut(s)	101, 192, 283
BseXI	GCAGC	3 cut(s)	307, 440, 442
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	5, 99, 264
BsiEI	CGRYCG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	5, 99, 264
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	5, 99, 264
BspCNI	CTCAG	2 cut(s)	316, 329
BsrI	ACTGG	2 cut(s)	229, 397
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	4 cut(s)	31, 72, 119, 373
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	316, 324
BstF5I	GGATG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	37
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 452
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	307, 440, 442
BsuRI	GGCC	3 cut(s)	5, 99, 264
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	262, 419
CviAII	CATG	2 cut(s)	356, 494
DdeI	CTNAG	2 cut(s)	316, 324
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	419
FaeI	CATG	2 cut(s)	359, 497
FaiI	YATR	7 cut(s)	68, 149, 242, 244, 302, 357, 495
FatI	CATG	2 cut(s)	355, 493
Fnu4HI	GCNGC	3 cut(s)	321, 429, 456
FokI	GGATG	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	321, 429, 456
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	321, 429, 456
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	5, 99, 264
HapII	CCGG	1 cut(s)	265
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	359, 497
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	2 cut(s)	23, 91
HpaII	CCGG	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	4 cut(s)	31, 72, 119, 373
HpyCH4V	TGCA	4 cut(s)	211, 284, 296, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 452
HpyF3I	CTNAG	2 cut(s)	316, 324
Hsp92II	CATG	2 cut(s)	359, 497
HspAI	GCGC	1 cut(s)	401
LpnPI	CCDG	6 cut(s)	210, 278, 366, 378, 432, 445
Lsp1109I	GCAGC	3 cut(s)	307, 440, 442
MaeIII	GTNAC	1 cut(s)	388
MfeI	CAATTG	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	63, 79, 89, 213, 261, 389
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	265
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	407, 452
NlaIII	CATG	2 cut(s)	359, 497
PfeI	GAWTC	2 cut(s)	23, 91
PkrI	GCNGC	3 cut(s)	322, 430, 457
PspPI	GGNCC	2 cut(s)	262, 419
PstNI	CAGNNNCTG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	320
SatI	GCNGC	3 cut(s)	321, 429, 456
Sau96I	GGNCC	2 cut(s)	262, 419
SetI	ASST	3 cut(s)	322, 352, 400
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	31, 72, 119, 373
TaqI	TCGA	2 cut(s)	84, 94
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	23, 91
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	3 cut(s)	320, 428, 455
TspDTI	ATGAA	2 cut(s)	36, 229
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.