Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Reverse (-)

33576436 .. 33579150

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGAAGAGAAAGCAAATGAAACCGCAGCCACCAGAGAAGTAGAGGAGGCGCCGAAGATTGAGCCTATCCGGATGCCCACGCCGGAGGAGATTCGCGGCCAAGACATGATGAACAACTGTGCTGTGAAAACTGTGATTAGTGGAGTCATGGGTGGTGGACTTGGGTTGATGATGGGTTTGTTTCTTGGGGCTTTAGACAACCCAGTAATGCAAGACCAAATGACTGGAAGGGAGCAATTTGTTTACACAGCTAAGCAGATGGGGTCAAGGGCTTGGGGTTCTGCTAAGGCATTTGCAGTGATGGGAGTTCTTTTCTCAGCTTCTGAATGTGTTGTTGAAAAGGCACGGGCTAAGCATGACACAACAAATACAGTTGTTGCGGGATGTTTCACTGGAGGTGCAATGTCAGCAAAAGCTGGTCCAAAAGCAGCCTGTGTTGGTTGTGCTGGGTTTGCCGCATTTTCGTTGCTGATAGAGAAGTTTCTGGATAGACATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

168

Amino Acids

17.69

Weight (kDa)

5.77

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	41 - 156	7.1e-29	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	5 cut(s)	5, 27, 99, 383, 459
AcoI	YGGCCR	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	341
AluBI	AGCT	3 cut(s)	254, 323, 419
AluI	AGCT	3 cut(s)	254, 323, 419
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	29, 431
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	41, 443
BccI	CCATC	3 cut(s)	169, 256, 298
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	4 cut(s)	30, 100, 432, 459
BlpI	GCTNAGC	2 cut(s)	255, 354
BlsI	GCNGC	4 cut(s)	31, 101, 433, 460
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	288
Bpu1102I	GCTNAGC	2 cut(s)	255, 354
BsaHI	GRCGYC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	72
Bse1I	ACTGG	3 cut(s)	206, 232, 400
Bse3DI	GCAATG	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	72
BseGI	GGATG	2 cut(s)	81, 392
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	3 cut(s)	206, 232, 400
BseRI	GAGGAG	2 cut(s)	62, 104
BseXI	GCAGC	2 cut(s)	41, 443
BseYI	CCCAGC	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	73, 86
BsnI	GGCC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	72
Bsp1720I	GCTNAGC	2 cut(s)	255, 354
BspACI	CCGC	5 cut(s)	5, 27, 99, 383, 459
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	206, 232, 400
BssNI	GRCGYC	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	122, 136, 376
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	255, 288, 319, 354
BstF5I	GGATG	2 cut(s)	81, 392
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 455
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	41, 443
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	81, 392
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 393
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	422
CviAII	CATG	4 cut(s)	109, 151, 359, 497
DdeI	CTNAG	4 cut(s)	255, 288, 319, 354
DinI	GGCGCC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	422
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
FaeI	CATG	4 cut(s)	112, 154, 362, 500
FaiI	YATR	4 cut(s)	110, 152, 360, 498
FatI	CATG	4 cut(s)	108, 150, 358, 496
FauI	CCCGC	1 cut(s)	376
Fnu4HI	GCNGC	4 cut(s)	30, 100, 432, 459
FokI	GGATG	2 cut(s)	88, 399
Fsp4HI	GCNGC	4 cut(s)	30, 100, 432, 459
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	4 cut(s)	30, 100, 432, 459
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	73, 86
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	112, 154, 362, 500
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	2 cut(s)	94, 147
HpaII	CCGG	2 cut(s)	73, 86
Hpy166II	GTNNAC	2 cut(s)	161, 247
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	73, 488
Hpy8I	GTNNAC	2 cut(s)	161, 247
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	3 cut(s)	122, 136, 376
HpyCH4V	TGCA	3 cut(s)	214, 299, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 455
HpyF3I	CTNAG	4 cut(s)	255, 288, 319, 354
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	112, 154, 362, 500
HspAI	GCGC	1 cut(s)	53
KasI	GGCGCC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	2 cut(s)	41, 443
LweI	GCATC	1 cut(s)	66
MboII	GAAGA	2 cut(s)	20, 70
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	4 cut(s)	40, 43, 82, 392
MroI	TCCGGA	1 cut(s)	72
MspI	CCGG	2 cut(s)	73, 86
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	410, 455
NarI	GGCGCC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	112, 154, 362, 500
NlaIV	GGNNCC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	31, 101, 433, 460
PleI	GAGTC	1 cut(s)	155
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	326
SatI	GCNGC	4 cut(s)	30, 100, 432, 459
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	156
SetI	ASST	4 cut(s)	256, 325, 403, 421
SfaNI	GCATC	1 cut(s)	66
SfoI	GGCGCC	1 cut(s)	54
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	5 cut(s)	5, 27, 99, 383, 459
SspDI	GGCGCC	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	122, 136, 376
TasI	AATT	1 cut(s)	239
TauI	GCSGC	2 cut(s)	102, 461
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	2 cut(s)	306, 400
TseI	GCWGC	2 cut(s)	29, 431
TspDTI	ATGAA	2 cut(s)	36, 128
TspRI	CASTG	2 cut(s)	306, 400
VpaK11BI	GGWCC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.