Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

5541183 .. 5541862

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1064200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGGATTGGTTTTCTCAGCTGCCGAGTGTGTTGTTGAAAAGGCACGGGCTAAACATGACACAACAAATACAGTTGTTGTTGGATGTATAACTGGAGGTGCACTGTCAGCCAAAGCTGGTCCGCAAGCAGCCTGTGTTGGTTGTGCTGGCTTTGCTGCATTTTCGGTGCCGATAGAGAAGTTTTTGGATAGACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

67

Amino Acids

6.67

Weight (kDa)

6.53

Isoelectric Point (pI)

23.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	1 - 55	8.7e-16	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	2 cut(s)	20, 116
AluI	AGCT	2 cut(s)	20, 116
Alw21I	GWGCWC	1 cut(s)	103
Alw44I	GTGCAC	1 cut(s)	99
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	20, 128, 155
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	7, 140, 142
BisI	GCNGC	3 cut(s)	21, 129, 156
BlsI	GCNGC	3 cut(s)	22, 130, 157
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	7, 140, 142
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	73, 105
BstC8I	GCNNGC	2 cut(s)	126, 148
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 152
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	7, 140, 142
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	126, 148
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	6 cut(s)	20, 50, 110, 116, 131, 150
CviKI_1	RGCY	6 cut(s)	20, 50, 110, 116, 131, 150
DdeI	CTNAG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	119
FaeI	CATG	1 cut(s)	59
FaiI	YATR	2 cut(s)	57, 89
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	21, 129, 156
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	21, 129, 156
GluI	GCNGC	3 cut(s)	21, 129, 156
GsuI	CTGGAG	1 cut(s)	114
Hin1II	CATG	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	73, 105
HpyCH4V	TGCA	2 cut(s)	101, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 152
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	59
LpnPI	CCDG	4 cut(s)	78, 102, 132, 145
Lsp1109I	GCAGC	3 cut(s)	7, 140, 142
MhlI	GDGCHC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	107, 152
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	22, 130, 157
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	20
SatI	GCNGC	3 cut(s)	21, 129, 156
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	3 cut(s)	22, 100, 118
SgeI	CNNG	9 cut(s)	37, 57, 59, 68, 105, 129, 137, 144, 159
SinI	GGWCC	1 cut(s)	119
SsiI	CCGC	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	73, 105
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	3 cut(s)	20, 128, 155
TspRI	CASTG	1 cut(s)	108
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.