Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Reverse (-)

30498410 .. 30498971

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1253300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCCGCTCTGGGATAAAGATAGACAGACAGAGGGAGAGGGAGACAGAGCGACAGAGAGAAAGGGAGAGGGAGGAGTGGGGATCTCAGTACCATTGCGACAGATCCTCGATTTCATGAGTGGGAGAGGGGGTACAGTCAGAGAAAAGTATGGGGGCCGTCGGGATTTGAGGGGGAAGGGTATGGATCGGGGCCGGGGATCTGGGTTTGTCCCTTTGGGCTGTTTGCGACCTCTCTTAGCGACTTACTCCGGCTTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.44

Weight (kDa)

10.25

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	89, 97, 192, 205
AfaI	GTAC	2 cut(s)	90, 133
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	89, 97, 192, 205
AoxI	GGCC	2 cut(s)	154, 190
AspS9I	GGNCC	2 cut(s)	154, 190
AsuC2I	CCSGG	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	154, 190
BmiI	GGNNCC	2 cut(s)	155, 191
BmrFI	CCNGG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bse3DI	GCAATG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	156, 192
BsiSI	CCGG	2 cut(s)	193, 249
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	156, 192
Bsp143I	GATC	4 cut(s)	81, 102, 184, 197
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	156, 192
BspCNI	CTCAG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	155, 191
BspPI	GGATC	4 cut(s)	89, 97, 192, 205
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	4 cut(s)	81, 102, 184, 197
Bst4CI	ACNGT	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	85, 235
BstKTI	GATC	4 cut(s)	84, 105, 187, 200
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	4 cut(s)	81, 102, 184, 197
BstSCI	CCNGG	1 cut(s)	192
BstX2I	RGATCY	3 cut(s)	81, 102, 197
BstYI	RGATCY	3 cut(s)	81, 102, 197
BsuRI	GGCC	2 cut(s)	156, 192
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	154, 190
Csp6I	GTAC	2 cut(s)	89, 132
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	156, 192, 219, 252
CviKI_1	RGCY	4 cut(s)	156, 192, 219, 252
CviQI	GTAC	2 cut(s)	89, 132
DdeI	CTNAG	2 cut(s)	85, 235
DpnI	GATC	4 cut(s)	83, 104, 186, 199
DpnII	GATC	4 cut(s)	81, 102, 184, 197
FaeI	CATG	1 cut(s)	118
FaiI	YATR	3 cut(s)	116, 150, 182
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	156, 192
HapII	CCGG	2 cut(s)	193, 249
Hin1II	CATG	1 cut(s)	118
HpaII	CCGG	2 cut(s)	193, 249
Hpy188I	TCNGA	2 cut(s)	140, 257
Hpy188III	TCNNGA	2 cut(s)	115, 161
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	85, 235
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	81, 102, 184, 197
LpnPI	CCDG	2 cut(s)	186, 206
MalI	GATC	4 cut(s)	83, 104, 186, 199
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	4 cut(s)	81, 102, 184, 197
MflI	RGATCY	3 cut(s)	81, 102, 197
MnlI	CCTC	8 cut(s)	25, 31, 61, 65, 116, 119, 162, 240
MspI	CCGG	2 cut(s)	193, 249
MspR9I	CCNGG	1 cut(s)	194
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	4 cut(s)	81, 102, 184, 197
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	155, 191
PagI	TCATGA	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	155, 191
PspPI	GGNCC	2 cut(s)	154, 190
PsuI	RGATCY	3 cut(s)	81, 102, 197
RsaI	GTAC	2 cut(s)	90, 133
RsaNI	GTAC	2 cut(s)	89, 132
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	81, 102, 184, 197
Sau96I	GGNCC	2 cut(s)	154, 190
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	1 cut(s)	232
SgeI	CNNG	8 cut(s)	22, 119, 127, 173, 200, 205, 206, 213
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.