Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

4124689 .. 4126701

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCATCGAATCCGGAGAACGAATCTACGGCCTCGAGCGAGGTCGAGAACCCTCCGATTGAGCCCTTTCGGCTGCCGACGGTGAAGGAGATGCGCGGTCAAGACATTTGGAACAACTGCGCCGTCCGCAGCGTCGTTAGTGGAGTTATGGGTGGTGGGCTTGGGTTGATGATGGGTTTGCTTCTTGGAGCGTTAGACACCCCTATAATGCAAGACGAAATGACTGGTAAACAACAAATTCATTCACCAAGCAAAGTCGATGGGCCGGAGGAGTTGGAGTTCTGCAAAAGCATTTGCAGTTATGGGATTGGTTTTCTCAGCTGCCGAGTGTGTTGTGAAAAGGCACGAGTTAAACATGACACAACAAATACAGTTGTTGCTGGATATGTAACTGGAGGTGCACTGTCAGCCAAGGCTGGTCCGCAATCAGCCTGTGTTGGTTGTGCCGGCTTTGCTGCATTTTCGGTGCTGATAGAGAAGTTTTTGGATAGACATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

167

Amino Acids

17.6

Weight (kDa)

5.2

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	3 cut(s)	96, 127, 422
AcsI	RAATTY	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
Alw21I	GWGCWC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	2 cut(s)	30, 263
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	4 cut(s)	73, 129, 321, 455
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	96, 122
AspS9I	GGNCC	2 cut(s)	263, 419
AsuHPI	GGTGA	2 cut(s)	94, 237
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	4 cut(s)	60, 141, 308, 442
BccI	CCATC	2 cut(s)	166, 254
BceAI	ACGGC	2 cut(s)	45, 107
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	74, 130, 322, 456
BlsI	GCNGC	4 cut(s)	75, 131, 323, 457
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	263, 419
BmsI	GCATC	2 cut(s)	14, 81
BpmI	CTGGAG	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	229, 397
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	411
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	2 cut(s)	229, 397
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	4 cut(s)	60, 141, 308, 442
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	32, 265
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	14, 266, 447
BsnI	GGCC	2 cut(s)	32, 265
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	66, 403
Bsp13I	TCCGGA	1 cut(s)	13
BspACI	CCGC	3 cut(s)	96, 127, 422
BspANI	GGCC	2 cut(s)	32, 265
BspCNI	CTCAG	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	229, 397
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	411
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	82, 373, 405
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	96, 122
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 126, 407, 452
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	60, 141, 308, 442
BsuRI	GGCC	2 cut(s)	32, 265
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	448
CfoI	GCGC	2 cut(s)	96, 122
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	263, 419
CseI	GACGC	1 cut(s)	121
CviAII	CATG	2 cut(s)	356, 494
DdeI	CTNAG	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	2 cut(s)	359, 497
FaiI	YATR	6 cut(s)	149, 206, 303, 357, 387, 495
FatI	CATG	2 cut(s)	355, 493
Fnu4HI	GCNGC	4 cut(s)	74, 130, 322, 456
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	4 cut(s)	74, 130, 322, 456
GlaI	GCGC	2 cut(s)	95, 121
GluI	GCNGC	4 cut(s)	74, 130, 322, 456
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	32, 265
HapII	CCGG	3 cut(s)	14, 266, 447
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	2 cut(s)	96, 122
Hin1II	CATG	2 cut(s)	359, 497
Hin6I	GCGC	2 cut(s)	94, 120
HinP1I	GCGC	2 cut(s)	94, 120
HinfI	GANTC	2 cut(s)	10, 23
HpaII	CCGG	3 cut(s)	14, 266, 447
HphI	GGTGA	2 cut(s)	94, 237
Hpy166II	GTNNAC	2 cut(s)	230, 401
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	3 cut(s)	14, 46, 101
Hpy8I	GTNNAC	2 cut(s)	230, 401
Hpy99I	CGWCG	2 cut(s)	82, 137
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	3 cut(s)	82, 373, 405
HpyCH4V	TGCA	5 cut(s)	211, 285, 297, 401, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 126, 407, 452
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	359, 497
HspAI	GCGC	2 cut(s)	94, 120
Kpn2I	TCCGGA	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	27, 210, 279, 366, 378, 402, 445, 460
Lsp1109I	GCAGC	4 cut(s)	60, 141, 308, 442
LweI	GCATC	2 cut(s)	14, 81
MaeIII	GTNAC	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	66, 403
MluCI	AATT	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	34, 43, 63, 262, 389
MroI	TCCGGA	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	446
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	14, 266, 447
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	70, 126, 407, 452
NaeI	GCCGGC	1 cut(s)	448
NgoMIV	GCCGGC	1 cut(s)	446
NlaIII	CATG	2 cut(s)	359, 497
NmeAIII	GCCGAG	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	10, 23
PkrI	GCNGC	4 cut(s)	75, 131, 323, 457
PspPI	GGNCC	2 cut(s)	263, 419
PspXI	VCTCGAGB	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	74, 130, 322, 456
Sau96I	GGNCC	2 cut(s)	263, 419
SduI	GDGCHC	2 cut(s)	66, 403
SetI	ASST	3 cut(s)	45, 323, 400
SfaNI	GCATC	2 cut(s)	14, 81
Sfr274I	CTCGAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	96, 127, 422
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	82, 373, 405
TaqI	TCGA	4 cut(s)	8, 35, 45, 258
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	10, 23
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	4 cut(s)	73, 129, 321, 455
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	408
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	237
XhoI	CTCGAG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.