Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Reverse (-)

56680208 .. 56680957

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0410500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAATTTAATTTGGATTTTTCGGGGTATTACACAGAGCAACTCCCAACCCACTCTCTCTCTCAAATCAGGTCTGTGTCCAGGTCAAGCAAAGCTGGGCTTCAATTTTCGGTGGGTAGGATCGTCCGGTTTCTTAAGTTCGGCCAGTACGCCGAGCGTGTCGGCGCCGGAGCTCCGGTGTATCTTTTTGTTGTCCTTGAATACCTGGCTGCCGAGGTTTTGGAGCTTGCTGGCAACGCAGCTAGGGACAACAAGAAGAACCGTATTGTACCGAGGTGTACAATCTCAAATCAGCTATGGTTTCTTGTAGAACCACCCCTTCGTACTATACACTCACAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

9.51

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	22 - 92	2.5e-07	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	149, 270, 280, 325
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	104, 200
AjnI	CCWGG	2 cut(s)	80, 204
AluBI	AGCT	5 cut(s)	95, 173, 226, 242, 295
AluI	AGCT	5 cut(s)	95, 173, 226, 242, 295
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	209, 239
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	196, 251
BciT130I	CCWGG	2 cut(s)	82, 206
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	210, 240
BlsI	GCNGC	2 cut(s)	211, 241
Bme1390I	CCNGG	2 cut(s)	82, 206
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	82, 206
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	213, 272
BsaWI	WCCGGW	2 cut(s)	126, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	82, 206
BseDI	CCNNGG	2 cut(s)	213, 272
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	196, 251
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	127, 168, 176
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	213, 272
BssMI	GATC	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	82, 206
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	228, 232
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	82, 206
BstSCI	CCNGG	2 cut(s)	80, 204
BstV1I	GCAGC	2 cut(s)	196, 251
BsuRI	GGCC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	228, 232
CfoI	GCGC	1 cut(s)	167
Csp6I	GTAC	4 cut(s)	148, 269, 279, 324
CviJI	RGCY	8 cut(s)	95, 100, 144, 173, 209, 226, 242, 295
CviKI_1	RGCY	8 cut(s)	95, 100, 144, 173, 209, 226, 242, 295
CviQI	GTAC	4 cut(s)	148, 269, 279, 324
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	80, 204
EcoT38I	GRGCYC	1 cut(s)	175
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaiI	YATR	2 cut(s)	298, 329
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	210, 240
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	210, 240
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	210, 240
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	3 cut(s)	127, 168, 176
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HpaII	CCGG	3 cut(s)	127, 168, 176
Hpy166II	GTNNAC	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	3 cut(s)	170, 178, 223
Lsp1109I	GCAGC	2 cut(s)	196, 251
MaeI	CTAG	1 cut(s)	243
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	5, 10, 104
Mly113I	GGCGCC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	208, 267
MseI	TTAA	2 cut(s)	9, 135
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	3 cut(s)	127, 168, 176
MspR9I	CCNGG	2 cut(s)	82, 206
MvaI	CCWGG	2 cut(s)	82, 206
MwoI	GCNNNNNNNGC	1 cut(s)	236
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	1 cut(s)	120
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	2 cut(s)	178, 238
PkrI	GCNGC	2 cut(s)	211, 241
PluTI	GGCGCC	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	2 cut(s)	80, 204
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	80, 204
PspN4I	GGNNCC	1 cut(s)	166
RsaI	GTAC	4 cut(s)	149, 270, 280, 325
RsaNI	GTAC	4 cut(s)	148, 269, 279, 324
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	9, 135
SatI	GCNGC	2 cut(s)	210, 240
Sau3AI	GATC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	82, 206
SduI	GDGCHC	1 cut(s)	175
SfoI	GGCGCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	5, 10, 104
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	80, 204
TaaI	ACNGT	1 cut(s)	263
TasI	AATT	3 cut(s)	5, 10, 104
TatI	WGTACW	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	9, 135
Tru9I	TTAA	2 cut(s)	9, 135
TseI	GCWGC	2 cut(s)	209, 239
Vha464I	CTTAAG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.