Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

4933332 .. 4935406

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1061000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCTCGAATCCGGAGAACGAACCTACGGCCTCGAGAGAGGTCGAGAAGCCACCGATTGAGCCCATACGGCTGCCCACGGTGGAGGAGATGCGCGGCCAAGACATTTGGAACAACTGCGCCGTACGCAGCGTTGTTAGTGGAGTTATGGGTGGTGGGCTTGGGTTGATGATGGGTTTGCTTCTCGGAGCGTTAGACAACCCTATAATGCAAGACGAAATGACTGGTAAACAGCAATTCATTTATCAAGCAAAGTCGATGGGCCGGAGGAGTTGGAGTTCTGCAAAAGCATTTGCAGTTATGGGATTTGTTTTCTCAGCAGCTGAGTGTGTTGTTGAAAAGGCACGAGCTAAACATGACACAACAAATACAGTTGTTGCTGGATGTGTAACTGGTGGTGCACTCTCAGCCAAAGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

141

Amino Acids

14.98

Weight (kDa)

6.58

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	40 - 136	1.3e-25	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	2 cut(s)	323, 350
AluI	AGCT	2 cut(s)	323, 350
Alw21I	GWGCWC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	399
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	4 cut(s)	3, 30, 97, 262
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	73, 129, 320
AspLEI	GCGC	2 cut(s)	96, 122
AspS9I	GGNCC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	60, 141, 332
BccI	CCATC	2 cut(s)	166, 253
BceAI	ACGGC	3 cut(s)	45, 86, 107
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	4 cut(s)	74, 97, 130, 321
BlsI	GCNGC	4 cut(s)	75, 98, 131, 322
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	262
BmsI	GCATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	2 cut(s)	229, 397
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	315, 330, 420
BseNI	ACTGG	2 cut(s)	229, 397
BseRI	GAGGAG	2 cut(s)	101, 283
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	60, 141, 332
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	5, 32, 99, 264
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	14, 265
BsiWI	CGTACG	1 cut(s)	124
BsnI	GGCC	4 cut(s)	5, 32, 99, 264
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	66, 403
Bsp13I	TCCGGA	1 cut(s)	13
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	4 cut(s)	5, 32, 99, 264
BspCNI	CTCAG	3 cut(s)	316, 329, 419
BspEI	TCCGGA	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	229, 397
BssECI	CCNNGG	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	82, 373
BstDEI	CTNAG	3 cut(s)	316, 324, 406
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	96, 122
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 126, 407
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	60, 141, 332
BsuRI	GGCC	4 cut(s)	5, 32, 99, 264
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	2 cut(s)	96, 122
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	1 cut(s)	356
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	316, 324, 406
EaeI	YGGCCR	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	1 cut(s)	359
FaiI	YATR	5 cut(s)	68, 149, 206, 302, 357
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	74, 97, 130, 321
FokI	GGATG	1 cut(s)	396
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	4 cut(s)	74, 97, 130, 321
GlaI	GCGC	2 cut(s)	95, 121
GluI	GCNGC	4 cut(s)	74, 97, 130, 321
HaeIII	GGCC	4 cut(s)	5, 32, 99, 264
HapII	CCGG	2 cut(s)	14, 265
HhaI	GCGC	2 cut(s)	96, 122
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	2 cut(s)	94, 120
HinP1I	GCGC	2 cut(s)	94, 120
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	2 cut(s)	14, 265
Hpy166II	GTNNAC	2 cut(s)	230, 401
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	3 cut(s)	14, 36, 46
Hpy8I	GTNNAC	2 cut(s)	230, 401
HpyCH4III	ACNGT	2 cut(s)	82, 373
HpyCH4V	TGCA	4 cut(s)	211, 284, 296, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 126, 407
HpyF3I	CTNAG	3 cut(s)	316, 324, 406
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	2 cut(s)	94, 120
Kpn2I	TCCGGA	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	5 cut(s)	27, 210, 278, 366, 378
Lsp1109I	GCAGC	3 cut(s)	60, 141, 332
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	66, 403
MluCI	AATT	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	5 cut(s)	16, 34, 43, 79, 261
MroI	TCCGGA	1 cut(s)	13
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	14, 265
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	70, 126, 407
NlaIII	CATG	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	10
Pfl23II	CGTACG	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	75, 98, 131, 322
PspLI	CGTACG	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SatI	GCNGC	4 cut(s)	74, 97, 130, 321
Sau96I	GGNCC	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	66, 403
SetI	ASST	4 cut(s)	28, 45, 325, 352
SfaNI	GCATC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	82, 373
TaqI	TCGA	4 cut(s)	8, 35, 45, 257
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	73, 129, 320
TspDTI	ATGAA	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	399
XhoI	CTCGAG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.